| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
Click here to switch to the map view.
The map label for this gene is phnP [H]
Identifier: 74318306
GI number: 74318306
Start: 2363300
End: 2364067
Strand: Reverse
Name: phnP [H]
Synonym: Tbd_2288
Alternate gene names: 74318306
Gene position: 2364067-2363300 (Counterclockwise)
Preceding gene: 74318307
Following gene: 74318303
Centisome position: 81.24
GC content: 59.38
Gene sequence:
>768_bases ATGCGCGTGACGTTTCTCGGTACGGGTGCCGCAGGCGGTGTGCCGCTTTACGGCTGCGATTGTCCGGCTTGCACGCGAGC GCGGGCGGTGGTCGACTTTCGTCGCCAGCCTTGTACAGCACTTATAGAAGCTGGCGAAACCCGCATTCTGCTGGATGCCG GCCTGACCGATCTCGCCGAGCGATTCCCGTCCGGCAGCCTGTCGGCCATCGTGCTGACCCATTTCCATCCCGATCACGTG CAGGGTCTGTTTCCTCTGCGCTGGGGAATCGGTAAAAATATTCCAGTCTACGGCCCGCCAGATTCAGAAGGCTGCGCTGA CCTCTACAAGAATCATGGCCTCCTCGAATTCCGGCGGCTCAGCAAGTTCGAGCCGGTCACGATCGGCAATCTGGTACTGA CGCCGTTGCCCTTGATCCATTCGAAGGCAACGTTTGGCTACGCTATCGAAGACACCGACGGCCAGCGCTTCGCTTATCTG ACCGACACCGCGGGCCTTCCGCCGCGGACGGAAGCGTTCTTGAAAAATTGGCGGCCTGCATCGTTCGCCTTGGACTGCAG CTATCCACCGCAATCCGATTTGCCGCGCAACCACAACGATTTGACTCTCGCCCTGACGATTGCGGAAACCCTCGCGCCAG CCAAGGTCTGGCTGACCCACGTCAGCCACGAACTTGACGCTTGGCTACTAGAGAACATCGGCGATCTGCCACCGCACATG GCTGTTGCCTATGACTCACAAGTCGTATCGGATGCAGGCTTTCTATAG
Upstream 100 bases:
>100_bases CTGGAAGTCATTGCGAACGACGCTGAATTGCACGTAGCCGGTGAACGCTTGGTACAGTTGTTGTCGGACGCCGACGCTTC CAAACGAGCGTTTGCCTGAC
Downstream 100 bases:
>100_bases CAATGCCGATAAGAGGCGCGACGTGAGTGCCGCCGCATTGCGGACATTCGTGAGGGGCCGGGCACTCATCAACCGTCTGC TTCGGCCGAATATGAGGCAT
Product: carbon-phosphorus lyase complex accessory protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 255; Mature: 255
Protein sequence:
>255_residues MRVTFLGTGAAGGVPLYGCDCPACTRARAVVDFRRQPCTALIEAGETRILLDAGLTDLAERFPSGSLSAIVLTHFHPDHV QGLFPLRWGIGKNIPVYGPPDSEGCADLYKNHGLLEFRRLSKFEPVTIGNLVLTPLPLIHSKATFGYAIEDTDGQRFAYL TDTAGLPPRTEAFLKNWRPASFALDCSYPPQSDLPRNHNDLTLALTIAETLAPAKVWLTHVSHELDAWLLENIGDLPPHM AVAYDSQVVSDAGFL
Sequences:
>Translated_255_residues MRVTFLGTGAAGGVPLYGCDCPACTRARAVVDFRRQPCTALIEAGETRILLDAGLTDLAERFPSGSLSAIVLTHFHPDHV QGLFPLRWGIGKNIPVYGPPDSEGCADLYKNHGLLEFRRLSKFEPVTIGNLVLTPLPLIHSKATFGYAIEDTDGQRFAYL TDTAGLPPRTEAFLKNWRPASFALDCSYPPQSDLPRNHNDLTLALTIAETLAPAKVWLTHVSHELDAWLLENIGDLPPHM AVAYDSQVVSDAGFL >Mature_255_residues MRVTFLGTGAAGGVPLYGCDCPACTRARAVVDFRRQPCTALIEAGETRILLDAGLTDLAERFPSGSLSAIVLTHFHPDHV QGLFPLRWGIGKNIPVYGPPDSEGCADLYKNHGLLEFRRLSKFEPVTIGNLVLTPLPLIHSKATFGYAIEDTDGQRFAYL TDTAGLPPRTEAFLKNWRPASFALDCSYPPQSDLPRNHNDLTLALTIAETLAPAKVWLTHVSHELDAWLLENIGDLPPHM AVAYDSQVVSDAGFL
Specific function: Belongs to an operon involved in alkylphosphonate uptake and C-P lyase. Exact function not known [H]
COG id: COG1235
COG function: function code R; Metal-dependent hydrolases of the beta-lactamase superfamily I
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790530, Length=243, Percent_Identity=50.2057613168724, Blast_Score=248, Evalue=2e-67,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR017693 [H]
Pfam domain/function: PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 27819; Mature: 27819
Theoretical pI: Translated: 5.78; Mature: 5.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVTFLGTGAAGGVPLYGCDCPACTRARAVVDFRRQPCTALIEAGETRILLDAGLTDLAE CEEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHCCCHHHHHHCCCEEEEEECCHHHHHH RFPSGSLSAIVLTHFHPDHVQGLFPLRWGIGKNIPVYGPPDSEGCADLYKNHGLLEFRRL HCCCCCEEEEEEEECCHHHHCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEHHHH SKFEPVTIGNLVLTPLPLIHSKATFGYAIEDTDGQRFAYLTDTAGLPPRTEAFLKNWRPA CCCCCEEECCEECCCCCHHCCCCCCCEEEECCCCCEEEEEECCCCCCCCHHHHHHCCCCC SFALDCSYPPQSDLPRNHNDLTLALTIAETLAPAKVWLTHVSHELDAWLLENIGDLPPHM CEEEECCCCCCCCCCCCCCCEEEEEEEHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCE AVAYDSQVVSDAGFL EEEECCHHHHCCCCC >Mature Secondary Structure MRVTFLGTGAAGGVPLYGCDCPACTRARAVVDFRRQPCTALIEAGETRILLDAGLTDLAE CEEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHCCCHHHHHHCCCEEEEEECCHHHHHH RFPSGSLSAIVLTHFHPDHVQGLFPLRWGIGKNIPVYGPPDSEGCADLYKNHGLLEFRRL HCCCCCEEEEEEEECCHHHHCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEHHHH SKFEPVTIGNLVLTPLPLIHSKATFGYAIEDTDGQRFAYLTDTAGLPPRTEAFLKNWRPA CCCCCEEECCEECCCCCHHCCCCCCCEEEECCCCCEEEEEECCCCCCCCHHHHHHCCCCC SFALDCSYPPQSDLPRNHNDLTLALTIAETLAPAKVWLTHVSHELDAWLLENIGDLPPHM CEEEECCCCCCCCCCCCCCCEEEEEEEHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCE AVAYDSQVVSDAGFL EEEECCHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2155230; 1840580; 7610040; 9278503 [H]