Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

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The map label for this gene is 74318031

Identifier: 74318031

GI number: 74318031

Start: 2103236

End: 2104378

Strand: Direct

Name: 74318031

Synonym: Tbd_2013

Alternate gene names: NA

Gene position: 2103236-2104378 (Clockwise)

Preceding gene: 74318030

Following gene: 74318033

Centisome position: 72.28

GC content: 65.27

Gene sequence:

>1143_bases
GTGCAACCGGCGTCAACGCGAGGCGTCAATCGTCTGTCATACTGCCCCGCCATACTCGGCGCGGCTTGCCCCTGCGGGCA
AACCCGGTTACCGTTGTCGCAGATGGGCGATAAGCTAAAAATTCCGCCTCTGCGCCCGTCCTTCGCCAGCCAGCCCGACA
TGCAGCCTCCCGAGCCCGTACCCGCCGCGCGCACCACCCTCCAGGAAAGCGTCGCCCATCAACGTGAGGCCCTCGCCAAC
CTGCTGCGCGAACCGCTGGCCTTGGCGGCGCAGGCATGCAGCCGGGTATGGGCGAATCGTGCAGCGCTCAATGCGGCCCT
GGGCCACGCGCTGGCGGACCTGCCCGCCTGCAAGTATCTGTACGCGCTCGACACCCGCGCGATCCAGCTTTCCGACAACA
TCAGCCGCGAGGGCCTGATCGAGACGGACTACGGCCGCGATCGCTCCGACCGCCCCTACATGCGTGAAGCGGTGCCGAAC
CAGGGCTTCCTGCTGTCTCAGGCCTACATTAGCCTGCGCGTCAAGCGCCCTTCGCTCACCGCGATCCAGATCGTGCGCGG
CGAAGACGACAAAGCGCTCGGTTTCGTCGGCGCCGACTTCGACCTGCGTGACCTGCCGATCACCGCGAAGCTCTACGACG
AGCCGACGTACTGGCGCCAGATCAAGGGCGACCCGGCGATTCGCGGCGCGGTCTTCCACCAGACGCGCAGCGAGAGCCAG
ATGGATCTCCACGTCGACACCGTGCTCGGTGTGATGACCGAATTGATGGAGGACCACGGCGTCTTCCACGGCAAGCTGCA
TTTCTCGAGCAGCCGCGCGACGGTCTGGCTCGTCGACGATCCCTACCGCTACCGTCTGCTCGACATCGACGCGCTGACCG
ACCCCGACACCTGCCTGATCTACCCGCACCATCTCTATCCGGATGACGCGGTCGTGCCGAAGGACAAGATTCGCCCGGTG
CTCGACAACCTGCGCGCCCTGCGTTTCATGGACGAAACCTTCTACCTGCGGGCCGGCTCGCTCAATATCTTCAATGGCAT
GGTCGGCCTCACGTTCTCGTGCGACGGCTCGCACTACCTGCCGTGGGACGAGTTTCTGAGCAAAGGCTACGACTTCTGGG
CGAGCGGCAGCACGCTCGGCTGA

Upstream 100 bases:

>100_bases
CCGTTGAAGGGCGCCTCAACGGCAACCTGCCCGACGCTGTAAAAAAGCGTTGCCTCGCACGCCGAATCCGGCCCGGCGCA
AGCCGGGATTTTCTTTTGAT

Downstream 100 bases:

>100_bases
AACGGCCGCGCGGCGCCGCTTCAGGCCGCGACTTTAGGCTTCTTGGCAGCCGGATAGACCTGGATCGGCGCGGTCTTTTT
CCTGCCGCGCCCCCCTCCGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MQPASTRGVNRLSYCPAILGAACPCGQTRLPLSQMGDKLKIPPLRPSFASQPDMQPPEPVPAARTTLQESVAHQREALAN
LLREPLALAAQACSRVWANRAALNAALGHALADLPACKYLYALDTRAIQLSDNISREGLIETDYGRDRSDRPYMREAVPN
QGFLLSQAYISLRVKRPSLTAIQIVRGEDDKALGFVGADFDLRDLPITAKLYDEPTYWRQIKGDPAIRGAVFHQTRSESQ
MDLHVDTVLGVMTELMEDHGVFHGKLHFSSSRATVWLVDDPYRYRLLDIDALTDPDTCLIYPHHLYPDDAVVPKDKIRPV
LDNLRALRFMDETFYLRAGSLNIFNGMVGLTFSCDGSHYLPWDEFLSKGYDFWASGSTLG

Sequences:

>Translated_380_residues
MQPASTRGVNRLSYCPAILGAACPCGQTRLPLSQMGDKLKIPPLRPSFASQPDMQPPEPVPAARTTLQESVAHQREALAN
LLREPLALAAQACSRVWANRAALNAALGHALADLPACKYLYALDTRAIQLSDNISREGLIETDYGRDRSDRPYMREAVPN
QGFLLSQAYISLRVKRPSLTAIQIVRGEDDKALGFVGADFDLRDLPITAKLYDEPTYWRQIKGDPAIRGAVFHQTRSESQ
MDLHVDTVLGVMTELMEDHGVFHGKLHFSSSRATVWLVDDPYRYRLLDIDALTDPDTCLIYPHHLYPDDAVVPKDKIRPV
LDNLRALRFMDETFYLRAGSLNIFNGMVGLTFSCDGSHYLPWDEFLSKGYDFWASGSTLG
>Mature_380_residues
MQPASTRGVNRLSYCPAILGAACPCGQTRLPLSQMGDKLKIPPLRPSFASQPDMQPPEPVPAARTTLQESVAHQREALAN
LLREPLALAAQACSRVWANRAALNAALGHALADLPACKYLYALDTRAIQLSDNISREGLIETDYGRDRSDRPYMREAVPN
QGFLLSQAYISLRVKRPSLTAIQIVRGEDDKALGFVGADFDLRDLPITAKLYDEPTYWRQIKGDPAIRGAVFHQTRSESQ
MDLHVDTVLGVMTELMEDHGVFHGKLHFSSSRATVWLVDDPYRYRLLDIDALTDPDTCLIYPHHLYPDDAVVPKDKIRPV
LDNLRALRFMDETFYLRAGSLNIFNGMVGLTFSCDGSHYLPWDEFLSKGYDFWASGSTLG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42408; Mature: 42408

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPASTRGVNRLSYCPAILGAACPCGQTRLPLSQMGDKLKIPPLRPSFASQPDMQPPEPV
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHCCCEEECCCCCCCCCCCCCCCCCCCC
PAARTTLQESVAHQREALANLLREPLALAAQACSRVWANRAALNAALGHALADLPACKYL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
YALDTRAIQLSDNISREGLIETDYGRDRSDRPYMREAVPNQGFLLSQAYISLRVKRPSLT
EECCCEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHCCCCCEEEEEEEEEEEEECCCCE
AIQIVRGEDDKALGFVGADFDLRDLPITAKLYDEPTYWRQIKGDPAIRGAVFHQTRSESQ
EEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCHHHHHCCCCCCHHHHHHHHCCCCCC
MDLHVDTVLGVMTELMEDHGVFHGKLHFSSSRATVWLVDDPYRYRLLDIDALTDPDTCLI
CEEHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEECCCCEEEEEEEECCCCCCEEEE
YPHHLYPDDAVVPKDKIRPVLDNLRALRFMDETFYLRAGSLNIFNGMVGLTFSCDGSHYL
EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCEEECCCEEEEEECCCCCCC
PWDEFLSKGYDFWASGSTLG
CHHHHHHCCCCEECCCCCCC
>Mature Secondary Structure
MQPASTRGVNRLSYCPAILGAACPCGQTRLPLSQMGDKLKIPPLRPSFASQPDMQPPEPV
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHCCCEEECCCCCCCCCCCCCCCCCCCC
PAARTTLQESVAHQREALANLLREPLALAAQACSRVWANRAALNAALGHALADLPACKYL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
YALDTRAIQLSDNISREGLIETDYGRDRSDRPYMREAVPNQGFLLSQAYISLRVKRPSLT
EECCCEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHCCCCCEEEEEEEEEEEEECCCCE
AIQIVRGEDDKALGFVGADFDLRDLPITAKLYDEPTYWRQIKGDPAIRGAVFHQTRSESQ
EEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCCHHHHHCCCCCCHHHHHHHHCCCCCC
MDLHVDTVLGVMTELMEDHGVFHGKLHFSSSRATVWLVDDPYRYRLLDIDALTDPDTCLI
CEEHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEECCCCEEEEEEEECCCCCCEEEE
YPHHLYPDDAVVPKDKIRPVLDNLRALRFMDETFYLRAGSLNIFNGMVGLTFSCDGSHYL
EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCEEECCCEEEEEECCCCCCC
PWDEFLSKGYDFWASGSTLG
CHHHHHHCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA