| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74317915
Identifier: 74317915
GI number: 74317915
Start: 1994288
End: 1995649
Strand: Reverse
Name: 74317915
Synonym: Tbd_1897
Alternate gene names: NA
Gene position: 1995649-1994288 (Counterclockwise)
Preceding gene: 74317916
Following gene: 74317914
Centisome position: 68.58
GC content: 66.15
Gene sequence:
>1362_bases ATGATGCTCAAAACCCTGACAAGCACTCTCCTGGCGGCCGGCGTCCTGCTGGCCGCTTCTTCGGCCCACGCGGAAACGGT CAACCTGCAGCAGGCCGTCGCCATGAGCCTCGCCGCCGATCCGCGCGTCAAGGAACGCGAACAGGTGGTCGAGGCCGCGC GTGCGCTGCTCGAAGAGGCGAAGGGCAACGCCGGCTGGCGCATCAGCGCCAACGCCTTCATCGGGCTCGCGCCCGAGGTC GAGGGCGGCTTCTATCAGGGTGGCGCGTACAGCGGCACGGTGCCGCGCACCGACGGCGACAACCTCGACGGCGTGTCGGA CTGGACCCACCTCGATTTCGCGCTGATCAAGCCGCTCTTCACCTTCGGCAAGATCGAACACTACGGCGAGGCGGCCCAAG GCAACGTCGACGTCAAGCGCGGCGAACTCAGCAAGACGCAGGGCGACATCGTCTATGACACCAAGCGCGCCTACTTCGGC TATCTGACGGCGCGCGACATCCGGGTGTTCCTCGAGGACATCCAGTCGCGGCTCGACCGCGCGATCGCCTCGGTCGACCG CAACCTCAAGGAAGAGAATGGCGAGTCGAAGCAGTCCGACCTCTATGCCCTGCAGACGGCGAAGGGCCTGCTGTCGAAAT ACGTGCATCAGTCGCGGGCGATCGAGAAAGTCAGTCTCGACGGCCTCAAGGTGCTGACCGGGGTCGGCCTGAAGACGGAA CTCGCCGTGGTCGACGAGCGTATCGCGCCCGTGCCGTTTCCGCAGGTCGAACTCGCCGACCTGCACGCGCGCGCCCTGCA GGATCGCCCCGAAATGCGCCAGCTCGAGGCCGGGCTGCGCGCCCGGCGCGCGCTCGTCGCCGCGAAGAAGGCGGATCGCA TGCCGAACGTCTACGCGGGCGTGATCGGGCAGTTCAACTACGCGTCCAACCGTGAACGGCTCGACAACCCCTATCTCACC GACCCCTTCAACGGCGGCGGGCTGACCCCGGTCGTCGGCGTGAAATGGGACTCGGTCTTCGGCGTCACCGACGCGCGCAT CAACCAGGCCCAGGCTGAACTCGAAGCGCTCAACCACAAGAAGGCCTTCGCGGTGTCGGGCATCCCCTTCGAGGTCAGCG AGGCCTACGTCAACGCCAAAGCCAACCTCGACGCCCAGCAGGAACTCGCCGAGGGGGCCACGGCGGCGCGGCGCTGGATG ATCGCTTCGCTGGCCGACCTGTCGGCGGGAATCGAAAGTGCCGGAACGGTGGCCGATGCGATCCGCAACTACGTTCTGGT GCATACCGAATATCTGCGCACCGTGAACGACTACAACATGAACGTCGCGCAGCTTGCCCGGCTGACCGGTGAACTCCGCT AA
Upstream 100 bases:
>100_bases TCAAGGACAAGGACCGCATTGCCATCACGCAGGACGCCGTGGTCCTCGAAAACCTGATCGGCCATTTTCTCTACGGCAAG GCTCAAGAAGGAGCGCCACA
Downstream 100 bases:
>100_bases GGGGGAAGGCGTCTACTCCCTGCCTGCCCGAATCGGGCCCCCGTTCTCTACACATAGGAAACCGTTATGTTGCGCACGTT TTTGCTGCCGCTGGCGCTGA
Product: putative outer membrane protein
Products: NA
Alternate protein names: Outer Membrane Protein; Outer Membrane Efflux Family Protein
Number of amino acids: Translated: 453; Mature: 453
Protein sequence:
>453_residues MMLKTLTSTLLAAGVLLAASSAHAETVNLQQAVAMSLAADPRVKEREQVVEAARALLEEAKGNAGWRISANAFIGLAPEV EGGFYQGGAYSGTVPRTDGDNLDGVSDWTHLDFALIKPLFTFGKIEHYGEAAQGNVDVKRGELSKTQGDIVYDTKRAYFG YLTARDIRVFLEDIQSRLDRAIASVDRNLKEENGESKQSDLYALQTAKGLLSKYVHQSRAIEKVSLDGLKVLTGVGLKTE LAVVDERIAPVPFPQVELADLHARALQDRPEMRQLEAGLRARRALVAAKKADRMPNVYAGVIGQFNYASNRERLDNPYLT DPFNGGGLTPVVGVKWDSVFGVTDARINQAQAELEALNHKKAFAVSGIPFEVSEAYVNAKANLDAQQELAEGATAARRWM IASLADLSAGIESAGTVADAIRNYVLVHTEYLRTVNDYNMNVAQLARLTGELR
Sequences:
>Translated_453_residues MMLKTLTSTLLAAGVLLAASSAHAETVNLQQAVAMSLAADPRVKEREQVVEAARALLEEAKGNAGWRISANAFIGLAPEV EGGFYQGGAYSGTVPRTDGDNLDGVSDWTHLDFALIKPLFTFGKIEHYGEAAQGNVDVKRGELSKTQGDIVYDTKRAYFG YLTARDIRVFLEDIQSRLDRAIASVDRNLKEENGESKQSDLYALQTAKGLLSKYVHQSRAIEKVSLDGLKVLTGVGLKTE LAVVDERIAPVPFPQVELADLHARALQDRPEMRQLEAGLRARRALVAAKKADRMPNVYAGVIGQFNYASNRERLDNPYLT DPFNGGGLTPVVGVKWDSVFGVTDARINQAQAELEALNHKKAFAVSGIPFEVSEAYVNAKANLDAQQELAEGATAARRWM IASLADLSAGIESAGTVADAIRNYVLVHTEYLRTVNDYNMNVAQLARLTGELR >Mature_453_residues MMLKTLTSTLLAAGVLLAASSAHAETVNLQQAVAMSLAADPRVKEREQVVEAARALLEEAKGNAGWRISANAFIGLAPEV EGGFYQGGAYSGTVPRTDGDNLDGVSDWTHLDFALIKPLFTFGKIEHYGEAAQGNVDVKRGELSKTQGDIVYDTKRAYFG YLTARDIRVFLEDIQSRLDRAIASVDRNLKEENGESKQSDLYALQTAKGLLSKYVHQSRAIEKVSLDGLKVLTGVGLKTE LAVVDERIAPVPFPQVELADLHARALQDRPEMRQLEAGLRARRALVAAKKADRMPNVYAGVIGQFNYASNRERLDNPYLT DPFNGGGLTPVVGVKWDSVFGVTDARINQAQAELEALNHKKAFAVSGIPFEVSEAYVNAKANLDAQQELAEGATAARRWM IASLADLSAGIESAGTVADAIRNYVLVHTEYLRTVNDYNMNVAQLARLTGELR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49277; Mature: 49277
Theoretical pI: Translated: 5.75; Mature: 5.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMLKTLTSTLLAAGVLLAASSAHAETVNLQQAVAMSLAADPRVKEREQVVEAARALLEEA CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH KGNAGWRISANAFIGLAPEVEGGFYQGGAYSGTVPRTDGDNLDGVSDWTHLDFALIKPLF CCCCCEEEECCEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH TFGKIEHYGEAAQGNVDVKRGELSKTQGDIVYDTKRAYFGYLTARDIRVFLEDIQSRLDR HHHHHHHHCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH AIASVDRNLKEENGESKQSDLYALQTAKGLLSKYVHQSRAIEKVSLDGLKVLTGVGLKTE HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHH LAVVDERIAPVPFPQVELADLHARALQDRPEMRQLEAGLRARRALVAAKKADRMPNVYAG HHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH VIGQFNYASNRERLDNPYLTDPFNGGGLTPVVGVKWDSVFGVTDARINQAQAELEALNHK HHHCCCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEECCEECCCHHHHHHHHHHHHHHCCC KAFAVSGIPFEVSEAYVNAKANLDAQQELAEGATAARRWMIASLADLSAGIESAGTVADA HHEEECCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCHHHHHH IRNYVLVHTEYLRTVNDYNMNVAQLARLTGELR HHHHHEEEHHHHHHHHCCCCCHHHHHHHHHCCC >Mature Secondary Structure MMLKTLTSTLLAAGVLLAASSAHAETVNLQQAVAMSLAADPRVKEREQVVEAARALLEEA CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH KGNAGWRISANAFIGLAPEVEGGFYQGGAYSGTVPRTDGDNLDGVSDWTHLDFALIKPLF CCCCCEEEECCEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH TFGKIEHYGEAAQGNVDVKRGELSKTQGDIVYDTKRAYFGYLTARDIRVFLEDIQSRLDR HHHHHHHHCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH AIASVDRNLKEENGESKQSDLYALQTAKGLLSKYVHQSRAIEKVSLDGLKVLTGVGLKTE HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHH LAVVDERIAPVPFPQVELADLHARALQDRPEMRQLEAGLRARRALVAAKKADRMPNVYAG HHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH VIGQFNYASNRERLDNPYLTDPFNGGGLTPVVGVKWDSVFGVTDARINQAQAELEALNHK HHHCCCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEECCEECCCHHHHHHHHHHHHHHCCC KAFAVSGIPFEVSEAYVNAKANLDAQQELAEGATAARRWMIASLADLSAGIESAGTVADA HHEEECCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCHHHHHH IRNYVLVHTEYLRTVNDYNMNVAQLARLTGELR HHHHHEEEHHHHHHHHCCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA