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The map label for this gene is yrbD [C]

Identifier: 74317916

GI number: 74317916

Start: 1995646

End: 1996113

Strand: Reverse

Name: yrbD [C]

Synonym: Tbd_1898

Alternate gene names: 74317916

Gene position: 1996113-1995646 (Counterclockwise)

Preceding gene: 74317917

Following gene: 74317915

Centisome position: 68.6

GC content: 61.75

Gene sequence:

>468_bases
ATGAACAAGACCGTACTCGATCTCTGGGTGGGATTATTCGTCATCGCGGGAATCGTGGCCCTGCTGTTCCTCGCGCTCAA
GGTCGGCAGCATGAGCGCCGTAAGCGCATCCGATACCTATGAGGTCGTCGCGCGCTTCGACAATGTCGGCGGCCTCAAGC
CGCGCGCCCCGGTGAAGAGCGCGGGCGTCGTCGTCGGCCGGGTCGGGGAGATCCGCTTCGACAACGAAAGCTACGAAGCC
GCGGTGACCCTGCGGCTCGACAAGCGCTATGCTTTTCCTAAGGATTCAAGCGCCGCGATCATGACGTCCGGCCTGCTGGG
CGAGCAATATATCGGCCTCGAAGCGGGCGGCGATAGCGCGACGCTCAAGGACAAGGACCGCATTGCCATCACGCAGGACG
CCGTGGTCCTCGAAAACCTGATCGGCCATTTTCTCTACGGCAAGGCTCAAGAAGGAGCGCCACAATGA

Upstream 100 bases:

>100_bases
TGTCGCGGGCGACGACCCGTACCGTGGTGACCTCGAGCCTCGCGGTGCTCGCGCTCGATTTCGTTTTGACTGCATTCATG
TTCCGGGGAAGCAACTGACA

Downstream 100 bases:

>100_bases
TGCTCAAAACCCTGACAAGCACTCTCCTGGCGGCCGGCGTCCTGCTGGCCGCTTCTTCGGCCCACGCGGAAACGGTCAAC
CTGCAGCAGGCCGTCGCCAT

Product: putative ABC transporter substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MNKTVLDLWVGLFVIAGIVALLFLALKVGSMSAVSASDTYEVVARFDNVGGLKPRAPVKSAGVVVGRVGEIRFDNESYEA
AVTLRLDKRYAFPKDSSAAIMTSGLLGEQYIGLEAGGDSATLKDKDRIAITQDAVVLENLIGHFLYGKAQEGAPQ

Sequences:

>Translated_155_residues
MNKTVLDLWVGLFVIAGIVALLFLALKVGSMSAVSASDTYEVVARFDNVGGLKPRAPVKSAGVVVGRVGEIRFDNESYEA
AVTLRLDKRYAFPKDSSAAIMTSGLLGEQYIGLEAGGDSATLKDKDRIAITQDAVVLENLIGHFLYGKAQEGAPQ
>Mature_155_residues
MNKTVLDLWVGLFVIAGIVALLFLALKVGSMSAVSASDTYEVVARFDNVGGLKPRAPVKSAGVVVGRVGEIRFDNESYEA
AVTLRLDKRYAFPKDSSAAIMTSGLLGEQYIGLEAGGDSATLKDKDRIAITQDAVVLENLIGHFLYGKAQEGAPQ

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG1463

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaD family [H]

Homologues:

Organism=Escherichia coli, GI1789584, Length=147, Percent_Identity=48.2993197278912, Blast_Score=129, Evalue=6e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003399 [H]

Pfam domain/function: PF02470 MCE [H]

EC number: NA

Molecular weight: Translated: 16477; Mature: 16477

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKTVLDLWVGLFVIAGIVALLFLALKVGSMSAVSASDTYEVVARFDNVGGLKPRAPVKS
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
AGVVVGRVGEIRFDNESYEAAVTLRLDKRYAFPKDSSAAIMTSGLLGEQYIGLEAGGDSA
CCEEEEECCEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCC
TLKDKDRIAITQDAVVLENLIGHFLYGKAQEGAPQ
CCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNKTVLDLWVGLFVIAGIVALLFLALKVGSMSAVSASDTYEVVARFDNVGGLKPRAPVKS
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
AGVVVGRVGEIRFDNESYEAAVTLRLDKRYAFPKDSSAAIMTSGLLGEQYIGLEAGGDSA
CCEEEEECCEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCC
TLKDKDRIAITQDAVVLENLIGHFLYGKAQEGAPQ
CCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]