| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74316849
Identifier: 74316849
GI number: 74316849
Start: 876540
End: 878978
Strand: Direct
Name: 74316849
Synonym: Tbd_0831
Alternate gene names: NA
Gene position: 876540-878978 (Clockwise)
Preceding gene: 74316843
Following gene: 74316850
Centisome position: 30.12
GC content: 65.76
Gene sequence:
>2439_bases ATGTATTCCTTTGAACCATATACCGGGCGTCCAATCAGACTTGATCTGCTCGTGCACAAAGGGGAGACCAGCATGGACGC GCCGACACCCGCCACGGCCCTGACATCGGTGGAACTCGAACAGCTGGACGCCTACTGGCGCGCGGCCAATTACCTCTCGG TCGGGCAGATTTATCTGTTCGACAATCCGCTGCTCAAACAGCCGCTTGACCGCGCCCACATCAAGCCGCGCCTGCTCGGC CACTGGGGAACGACGCCGGGCCTGAACTTCATCTATGCCCACATGAACCGCGCGATCCGCGCCCACGATCTCGACATGAT CTTCATCACGGGCCCCGGACACGGCGGCCCGGCTGTCGTCGCGAACACCTATCTCGAAGGCAGCTACAGCGAGCTCTATC CCAACATCACCCGCGACGAGGCCGGCCTGCGCCAGCTGTTCCGCCAGTTTTCCTTCCCCGGCGGCATCCCGAGCCACGCG GCGCCCGAGACGCCGGGCTCGATCAACGAAGGCGGCGAGCTCGGCTATTCGCTGCTGCACGCCTACGGCGCCGTGTTTGA CAATCCCGACCTGATCGCCTGCTGCGTGATCGGCGATGGGGAGGCCGAAACCGGCGCGCTCGCGACGTCGTGGCATTCCA ACAAGTTTCTCGACCCGCGCGGCGACGGCGCGGTGCTGCCGGTCCTGCATCTGAACGGCTACAAGATCGCGAATCCCGCG TTCCTCGCGCGCATCCCGCGCCACGAACTCGAAAGCCTGCTGACGGGCTACGGCTACCGGCCGATTTTCGTCGAGGGCGA CGAGCCAAGCGACATGCATCAGAAGATGGCCGCTGCGGTCGACCAGGCGCTTGCCGAGATTCGCGGTATCCAGCGCCGGG CGCGCGACGGCGGGGAGACCACGCGTCCGACATGGCCGATGATCGTGCTCGACTCGCCCAAGGGCTGGACCGGACCGAAG GAAGTCGACGGCAAGAAGACCGAGGACTACTGGCGTTCGCACCAGGTGCCGTTCGGCGACCTCGACAATCCCGCGCACGT GCGCCTGCTCGATGACTGGATGCGCAGCTACCGTCCCGAAGAACTGTTCGACGCCGGCGGCGCGTTAAAGCCCGAGCTCG CCGCGCTCGCACCGACGGGCGAGCGGCGCATGGGCGCCAACCCGCACGCCAACGGCGGCAAGCTCCTGCGCGACCTGCGG CTGCCGGATTTCCGCGACTACCGGGTCGAGCTGGACGCGCCCGGCAGCGTCGTCAGCGAGACGACGCGCACGCTCGGCGC CTATCTGCGCGACGTCGTGCGCGACAATCCCGACAATTTCCGTCTCTTCGGTCCCGACGAGACGCATTCGAACCGGCTTT CGGCGGTCTTCGAGGTCACCGACCGCACCTGGGTCGCCGAACGCTACCCCTACGACGACCATCTCGCGGCCGACGGCCGG GTCATGGAGATCCTCTCGGAACACGCCTGCGAAGGCTGGCTCGAGGGCTATCTGCTGAGCGGGCGCCACGGCCTCTTCTC GTGCTACGAGGCCTTCATCCACATCATCGGGTCGATGTTCAACCAGCACGCCAAATGGCTCAAGGTCTGTAACGAGATTC CGTGGCGCGTGCCGGTTGCCTCGCTCAACATCCTGCTCACCTCGCACGTCTGGCGCCAGGACCACAACGGCTTCTCGCAC CAGGACCCGGGCTTCATCGACCACGTCGTCAACAAGAAGGCCGACGTCATCCGCGTCTATCTGCCGCCCGACGCCAACAC GCTGCTCGTCGTCGCCGACAAGTGCCTGAGGAGCCGCAATCTCGTCAACGTCATCGTCGCCGGCAAGCAGCCCGAGCAGC AGTGGCTCGACATGGACGCCGCGGTCACTCACGCTGGCGTCGGCGTCGGCATCTGGGACTGGGCGTGCAACGACCAGGGC GGCGAGCCCGACATCGTGCTCGCGGCCGCGGGCGACGTGCCGACCATGGAAATGCTCGCCGCGATCGACCTCCTGCGCAC GCTCGTCCCCGACCTCAAAATTCGCTTCATCAACGTCGTCGACCTGATGACGCTGCAGCCTGCAGAGGAGCACCCGCACG GCCTGCCGGACGAGGAATTCGACCTTCTGTTCACGACCGACAAGCCCATCCTCTTCGGCTATCACGGCTATCCGTGGCTG ATCCATCGCCTCACCTACCGCCGCACCAACCACGACAACCTGCACGTGCGCGGCTACAAGGAGGAGGGCACGACGACGAC GCCCTTCGACATGGTCGTGCTGAACGAGCTGGATCGCTTCCATCTCGTCATCGACGTCGCGCGCCGCGTGCCGAAGCTGC AGGCCCAGGCGGCGCACCTGCAGCAGCAGATGCTCGACAAGCTCGGCGCGCACACGCAATACATCCACGCCCACGGCGAG GACATGCCCGAGATCCGGGACTGGAAATGGGCGCGCTAA
Upstream 100 bases:
>100_bases CTGTTGATTTATACAGTATTCTGGGCGCGATTCCAAGCCGCAAAAAATCCTGCGCGACGGCGCGAACTCGCTCGCGCCGC GTCCACGGCGGGGCGCCGCC
Downstream 100 bases:
>100_bases CCCGCAGCGTACTGACGCTCAACAGCGGCTCGTCGAGCCTCAAGGTGAGTCTGTTCCGCGCCGACGGCACGCGCAGCAAC TGGCATTACCGCGCGCGCAG
Product: putative phosphoketolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 812; Mature: 812
Protein sequence:
>812_residues MYSFEPYTGRPIRLDLLVHKGETSMDAPTPATALTSVELEQLDAYWRAANYLSVGQIYLFDNPLLKQPLDRAHIKPRLLG HWGTTPGLNFIYAHMNRAIRAHDLDMIFITGPGHGGPAVVANTYLEGSYSELYPNITRDEAGLRQLFRQFSFPGGIPSHA APETPGSINEGGELGYSLLHAYGAVFDNPDLIACCVIGDGEAETGALATSWHSNKFLDPRGDGAVLPVLHLNGYKIANPA FLARIPRHELESLLTGYGYRPIFVEGDEPSDMHQKMAAAVDQALAEIRGIQRRARDGGETTRPTWPMIVLDSPKGWTGPK EVDGKKTEDYWRSHQVPFGDLDNPAHVRLLDDWMRSYRPEELFDAGGALKPELAALAPTGERRMGANPHANGGKLLRDLR LPDFRDYRVELDAPGSVVSETTRTLGAYLRDVVRDNPDNFRLFGPDETHSNRLSAVFEVTDRTWVAERYPYDDHLAADGR VMEILSEHACEGWLEGYLLSGRHGLFSCYEAFIHIIGSMFNQHAKWLKVCNEIPWRVPVASLNILLTSHVWRQDHNGFSH QDPGFIDHVVNKKADVIRVYLPPDANTLLVVADKCLRSRNLVNVIVAGKQPEQQWLDMDAAVTHAGVGVGIWDWACNDQG GEPDIVLAAAGDVPTMEMLAAIDLLRTLVPDLKIRFINVVDLMTLQPAEEHPHGLPDEEFDLLFTTDKPILFGYHGYPWL IHRLTYRRTNHDNLHVRGYKEEGTTTTPFDMVVLNELDRFHLVIDVARRVPKLQAQAAHLQQQMLDKLGAHTQYIHAHGE DMPEIRDWKWAR
Sequences:
>Translated_812_residues MYSFEPYTGRPIRLDLLVHKGETSMDAPTPATALTSVELEQLDAYWRAANYLSVGQIYLFDNPLLKQPLDRAHIKPRLLG HWGTTPGLNFIYAHMNRAIRAHDLDMIFITGPGHGGPAVVANTYLEGSYSELYPNITRDEAGLRQLFRQFSFPGGIPSHA APETPGSINEGGELGYSLLHAYGAVFDNPDLIACCVIGDGEAETGALATSWHSNKFLDPRGDGAVLPVLHLNGYKIANPA FLARIPRHELESLLTGYGYRPIFVEGDEPSDMHQKMAAAVDQALAEIRGIQRRARDGGETTRPTWPMIVLDSPKGWTGPK EVDGKKTEDYWRSHQVPFGDLDNPAHVRLLDDWMRSYRPEELFDAGGALKPELAALAPTGERRMGANPHANGGKLLRDLR LPDFRDYRVELDAPGSVVSETTRTLGAYLRDVVRDNPDNFRLFGPDETHSNRLSAVFEVTDRTWVAERYPYDDHLAADGR VMEILSEHACEGWLEGYLLSGRHGLFSCYEAFIHIIGSMFNQHAKWLKVCNEIPWRVPVASLNILLTSHVWRQDHNGFSH QDPGFIDHVVNKKADVIRVYLPPDANTLLVVADKCLRSRNLVNVIVAGKQPEQQWLDMDAAVTHAGVGVGIWDWACNDQG GEPDIVLAAAGDVPTMEMLAAIDLLRTLVPDLKIRFINVVDLMTLQPAEEHPHGLPDEEFDLLFTTDKPILFGYHGYPWL IHRLTYRRTNHDNLHVRGYKEEGTTTTPFDMVVLNELDRFHLVIDVARRVPKLQAQAAHLQQQMLDKLGAHTQYIHAHGE DMPEIRDWKWAR >Mature_812_residues MYSFEPYTGRPIRLDLLVHKGETSMDAPTPATALTSVELEQLDAYWRAANYLSVGQIYLFDNPLLKQPLDRAHIKPRLLG HWGTTPGLNFIYAHMNRAIRAHDLDMIFITGPGHGGPAVVANTYLEGSYSELYPNITRDEAGLRQLFRQFSFPGGIPSHA APETPGSINEGGELGYSLLHAYGAVFDNPDLIACCVIGDGEAETGALATSWHSNKFLDPRGDGAVLPVLHLNGYKIANPA FLARIPRHELESLLTGYGYRPIFVEGDEPSDMHQKMAAAVDQALAEIRGIQRRARDGGETTRPTWPMIVLDSPKGWTGPK EVDGKKTEDYWRSHQVPFGDLDNPAHVRLLDDWMRSYRPEELFDAGGALKPELAALAPTGERRMGANPHANGGKLLRDLR LPDFRDYRVELDAPGSVVSETTRTLGAYLRDVVRDNPDNFRLFGPDETHSNRLSAVFEVTDRTWVAERYPYDDHLAADGR VMEILSEHACEGWLEGYLLSGRHGLFSCYEAFIHIIGSMFNQHAKWLKVCNEIPWRVPVASLNILLTSHVWRQDHNGFSH QDPGFIDHVVNKKADVIRVYLPPDANTLLVVADKCLRSRNLVNVIVAGKQPEQQWLDMDAAVTHAGVGVGIWDWACNDQG GEPDIVLAAAGDVPTMEMLAAIDLLRTLVPDLKIRFINVVDLMTLQPAEEHPHGLPDEEFDLLFTTDKPILFGYHGYPWL IHRLTYRRTNHDNLHVRGYKEEGTTTTPFDMVVLNELDRFHLVIDVARRVPKLQAQAAHLQQQMLDKLGAHTQYIHAHGE DMPEIRDWKWAR
Specific function: Unknown
COG id: COG3957
COG function: function code G; Phosphoketolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the XFP family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009014 - InterPro: IPR005593 - InterPro: IPR018969 - InterPro: IPR019790 - InterPro: IPR018970 - InterPro: IPR019789 [H]
Pfam domain/function: PF03894 XFP; PF09363 XFP_C; PF09364 XFP_N [H]
EC number: NA
Molecular weight: Translated: 91159; Mature: 91159
Theoretical pI: Translated: 5.89; Mature: 5.89
Prosite motif: PS60002 PHOSPHOKETOLASE_1 ; PS60003 PHOSPHOKETOLASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYSFEPYTGRPIRLDLLVHKGETSMDAPTPATALTSVELEQLDAYWRAANYLSVGQIYLF CCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECEEEEE DNPLLKQPLDRAHIKPRLLGHWGTTPGLNFIYAHMNRAIRAHDLDMIFITGPGHGGPAVV CCHHHHCCHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHEEECCEEEEEECCCCCCCEEE ANTYLEGSYSELYPNITRDEAGLRQLFRQFSFPGGIPSHAAPETPGSINEGGELGYSLLH EEEEECCCHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH AYGAVFDNPDLIACCVIGDGEAETGALATSWHSNKFLDPRGDGAVLPVLHLNGYKIANPA HHHHHCCCCCEEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEECCEEECCCH FLARIPRHELESLLTGYGYRPIFVEGDEPSDMHQKMAAAVDQALAEIRGIQRRARDGGET HHHHCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC TRPTWPMIVLDSPKGWTGPKEVDGKKTEDYWRSHQVPFGDLDNPAHVRLLDDWMRSYRPE CCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCEEEEHHHHHHHCCCH ELFDAGGALKPELAALAPTGERRMGANPHANGGKLLRDLRLPDFRDYRVELDAPGSVVSE HHHHCCCCCCCCHHEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEECCCCHHHHH TTRTLGAYLRDVVRDNPDNFRLFGPDETHSNRLSAVFEVTDRTWVAERYPYDDHLAADGR HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHEEEEEECCCEEEHHCCCCCCCCCCCCH VMEILSEHACEGWLEGYLLSGRHGLFSCYEAFIHIIGSMFNQHAKWLKVCNEIPWRVPVA HHHHHHHHHHHHHHHCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH SLNILLTSHVWRQDHNGFSHQDPGFIDHVVNKKADVIRVYLPPDANTLLVVADKCLRSRN HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCEEEEEECCCCCEEEEEEHHHHCCCC LVNVIVAGKQPEQQWLDMDAAVTHAGVGVGIWDWACNDQGGEPDIVLAAAGDVPTMEMLA EEEEEEECCCCHHHHHCHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEECCCCCHHHHHH AIDLLRTLVPDLKIRFINVVDLMTLQPAEEHPHGLPDEEFDLLFTTDKPILFGYHGYPWL HHHHHHHHCCCCEEEEEEEEHHEECCCHHHCCCCCCCCCCEEEEECCCCEEEECCCCHHH IHRLTYRRTNHDNLHVRGYKEEGTTTTPFDMVVLNELDRFHLVIDVARRVPKLQAQAAHL HHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHH QQQMLDKLGAHTQYIHAHGEDMPEIRDWKWAR HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCC >Mature Secondary Structure MYSFEPYTGRPIRLDLLVHKGETSMDAPTPATALTSVELEQLDAYWRAANYLSVGQIYLF CCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECEEEEE DNPLLKQPLDRAHIKPRLLGHWGTTPGLNFIYAHMNRAIRAHDLDMIFITGPGHGGPAVV CCHHHHCCHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHEEECCEEEEEECCCCCCCEEE ANTYLEGSYSELYPNITRDEAGLRQLFRQFSFPGGIPSHAAPETPGSINEGGELGYSLLH EEEEECCCHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH AYGAVFDNPDLIACCVIGDGEAETGALATSWHSNKFLDPRGDGAVLPVLHLNGYKIANPA HHHHHCCCCCEEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEECCEEECCCH FLARIPRHELESLLTGYGYRPIFVEGDEPSDMHQKMAAAVDQALAEIRGIQRRARDGGET HHHHCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC TRPTWPMIVLDSPKGWTGPKEVDGKKTEDYWRSHQVPFGDLDNPAHVRLLDDWMRSYRPE CCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCEEEEHHHHHHHCCCH ELFDAGGALKPELAALAPTGERRMGANPHANGGKLLRDLRLPDFRDYRVELDAPGSVVSE HHHHCCCCCCCCHHEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEECCCCHHHHH TTRTLGAYLRDVVRDNPDNFRLFGPDETHSNRLSAVFEVTDRTWVAERYPYDDHLAADGR HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHEEEEEECCCEEEHHCCCCCCCCCCCCH VMEILSEHACEGWLEGYLLSGRHGLFSCYEAFIHIIGSMFNQHAKWLKVCNEIPWRVPVA HHHHHHHHHHHHHHHCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH SLNILLTSHVWRQDHNGFSHQDPGFIDHVVNKKADVIRVYLPPDANTLLVVADKCLRSRN HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCEEEEEECCCCCEEEEEEHHHHCCCC LVNVIVAGKQPEQQWLDMDAAVTHAGVGVGIWDWACNDQGGEPDIVLAAAGDVPTMEMLA EEEEEEECCCCHHHHHCHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEECCCCCHHHHHH AIDLLRTLVPDLKIRFINVVDLMTLQPAEEHPHGLPDEEFDLLFTTDKPILFGYHGYPWL HHHHHHHHCCCCEEEEEEEEHHEECCCHHHCCCCCCCCCCEEEEECCCCEEEECCCCHHH IHRLTYRRTNHDNLHVRGYKEEGTTTTPFDMVVLNELDRFHLVIDVARRVPKLQAQAAHL HHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHH QQQMLDKLGAHTQYIHAHGEDMPEIRDWKWAR HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]