| Definition | Legionella pneumophila str. Lens, complete genome. |
|---|---|
| Accession | NC_006369 |
| Length | 3,345,687 |
Click here to switch to the map view.
The map label for this gene is xseA [H]
Identifier: 54293801
GI number: 54293801
Start: 972669
End: 974000
Strand: Reverse
Name: xseA [H]
Synonym: lpl0857
Alternate gene names: 54293801
Gene position: 974000-972669 (Counterclockwise)
Preceding gene: 54293807
Following gene: 54293800
Centisome position: 29.11
GC content: 40.09
Gene sequence:
>1332_bases ATGAGTAGTCAATTGCCAATACTGACCGTGAGCCAGCTAAATAGACAAGTGAAAGGTTTTCTCGAGAATGAAATAGGCCT TGTGCATGTCGAAGGCGAAATCTCTAACTTAAGCAAACCTTCTTCAGGACATTACTATTTCACCCTTAAAGACAGCACAG CGCAAATTCGTTGCGCCTTTTTTAAAAATCGACATTCCAGTTCTCTGCTTAGAAATTTTAATGATGGTCAACAAATTGTT GCCAGTGGCAAATTAAGTCTGTATGAAGCTCGGGGAGAATATCAGCTTATTGTTGAAGAGATAGTTGAAGCAGGAATGGG GATTCTCTATCAACGATTTGAAGAGTTAAAAATCAAACTGGCCAGAGAAGGCTTATTCAATCCTGAGAGAAAAAAAACAC TGCCCAGAATACCAGAAACGATTGGCATCATTACATCACCTACCGGAGCAGCTATCCAGGACATTCTCTCGACTCTGGCC CGTCGATTCCCAATAGCGAGAATTATTATTTATCCAAGTGAGGTTCAAGGGCAAGCCGCCCCTCAACAACTAGTCAATGC CTTAAAACTGGCTAATACCCATAAACGATGCCAGGTTCTCATCCTGGCGCGCGGCGGTGGCAGCATTGAAGACTTGTGGG CTTTTAATGATGAATACCTTGCTCGACAAATTGCAATCAGCGAAATTCCTGTTGTTTCTGGTATTGGTCATGAAACAGAT TTCACAATTGCTGATTTTGTAGCAGATTATCGCGCTGAAACGCCTACTGCTGCCGCTACGGCTGTTACTCCAAACTGCAT CGAATTATTCAATATTCTTGATACGGCTATTTATCGATTGCATGATGCCATCATCAGACTGGTTAAAGGGTTGCAATTAA AGCTCAATCATTTGATAGATAAAATTGCCTCACCCAGGCAAACTATCTCAACATACTGGCAAACCCTGGATTATCTGGAG AGACAGTTAATATCTGCTATGACTCAATTTATTAACTTAAACATTAACAAGATGAATCTTTTTTCAACACGATTGCAAGC TAACAATCCAAAAACACAAATTGAACGAACTAAAATCCAACTACGACAATTAATATTGCAATTAACCCAAGAGATCCGGA TAAAAGTAAACCAATTAAAACATCAACTATCCACCAATCTTTCCACTTTACATGCTGTAAGCCCCTTGGCTACACTAGAT AGAGGTTATGCTATTGTGAGTAAAAACCAAAGAATACTCTTTGCTGCCCAACAGGCACAAATTGGAGATACTATCGATGT CCGTTTAGCAAAAGGAAGTCTTGCTTGTGAGGTTACTCAAATTAAGGATTGA
Upstream 100 bases:
>100_bases ATAACCTTAAATGAAATAACATCTCACTACAATATAATTTTATTTCTTTAATTAGTTATTGTTGTTAACAACCTTTTGAT TTGATGAGATTTTTACCACC
Downstream 100 bases:
>100_bases CTAAAATCATGAAGAAACTATTACATTCACTTGCCTGTCTATTGATATTAATAAGCTCTGCAAAATTATCCTATGGCCTG GCTCTACCAGAAAATCATTC
Product: exodeoxyribonuclease VII large subunit
Products: NA
Alternate protein names: Exodeoxyribonuclease VII large subunit; Exonuclease VII large subunit [H]
Number of amino acids: Translated: 443; Mature: 442
Protein sequence:
>443_residues MSSQLPILTVSQLNRQVKGFLENEIGLVHVEGEISNLSKPSSGHYYFTLKDSTAQIRCAFFKNRHSSSLLRNFNDGQQIV ASGKLSLYEARGEYQLIVEEIVEAGMGILYQRFEELKIKLAREGLFNPERKKTLPRIPETIGIITSPTGAAIQDILSTLA RRFPIARIIIYPSEVQGQAAPQQLVNALKLANTHKRCQVLILARGGGSIEDLWAFNDEYLARQIAISEIPVVSGIGHETD FTIADFVADYRAETPTAAATAVTPNCIELFNILDTAIYRLHDAIIRLVKGLQLKLNHLIDKIASPRQTISTYWQTLDYLE RQLISAMTQFINLNINKMNLFSTRLQANNPKTQIERTKIQLRQLILQLTQEIRIKVNQLKHQLSTNLSTLHAVSPLATLD RGYAIVSKNQRILFAAQQAQIGDTIDVRLAKGSLACEVTQIKD
Sequences:
>Translated_443_residues MSSQLPILTVSQLNRQVKGFLENEIGLVHVEGEISNLSKPSSGHYYFTLKDSTAQIRCAFFKNRHSSSLLRNFNDGQQIV ASGKLSLYEARGEYQLIVEEIVEAGMGILYQRFEELKIKLAREGLFNPERKKTLPRIPETIGIITSPTGAAIQDILSTLA RRFPIARIIIYPSEVQGQAAPQQLVNALKLANTHKRCQVLILARGGGSIEDLWAFNDEYLARQIAISEIPVVSGIGHETD FTIADFVADYRAETPTAAATAVTPNCIELFNILDTAIYRLHDAIIRLVKGLQLKLNHLIDKIASPRQTISTYWQTLDYLE RQLISAMTQFINLNINKMNLFSTRLQANNPKTQIERTKIQLRQLILQLTQEIRIKVNQLKHQLSTNLSTLHAVSPLATLD RGYAIVSKNQRILFAAQQAQIGDTIDVRLAKGSLACEVTQIKD >Mature_442_residues SSQLPILTVSQLNRQVKGFLENEIGLVHVEGEISNLSKPSSGHYYFTLKDSTAQIRCAFFKNRHSSSLLRNFNDGQQIVA SGKLSLYEARGEYQLIVEEIVEAGMGILYQRFEELKIKLAREGLFNPERKKTLPRIPETIGIITSPTGAAIQDILSTLAR RFPIARIIIYPSEVQGQAAPQQLVNALKLANTHKRCQVLILARGGGSIEDLWAFNDEYLARQIAISEIPVVSGIGHETDF TIADFVADYRAETPTAAATAVTPNCIELFNILDTAIYRLHDAIIRLVKGLQLKLNHLIDKIASPRQTISTYWQTLDYLER QLISAMTQFINLNINKMNLFSTRLQANNPKTQIERTKIQLRQLILQLTQEIRIKVNQLKHQLSTNLSTLHAVSPLATLDR GYAIVSKNQRILFAAQQAQIGDTIDVRLAKGSLACEVTQIKD
Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]
COG id: COG1570
COG function: function code L; Exonuclease VII, large subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xseA family [H]
Homologues:
Organism=Escherichia coli, GI1788856, Length=446, Percent_Identity=41.9282511210762, Blast_Score=347, Evalue=8e-97,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003753 - InterPro: IPR020579 - InterPro: IPR004365 [H]
Pfam domain/function: PF02601 Exonuc_VII_L; PF01336 tRNA_anti [H]
EC number: =3.1.11.6 [H]
Molecular weight: Translated: 49655; Mature: 49524
Theoretical pI: Translated: 9.50; Mature: 9.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSQLPILTVSQLNRQVKGFLENEIGLVHVEGEISNLSKPSSGHYYFTLKDSTAQIRCAF CCCCCCEEEHHHHHHHHHHHHCCCCEEEEECCCHHCCCCCCCCEEEEEEECCCCEEEEEE FKNRHSSSLLRNFNDGQQIVASGKLSLYEARGEYQLIVEEIVEAGMGILYQRFEELKIKL HHCCCHHHHHHCCCCCHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AREGLFNPERKKTLPRIPETIGIITSPTGAAIQDILSTLARRFPIARIIIYPSEVQGQAA HHHCCCCCHHHCCCCCCCHHHCEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCC PQQLVNALKLANTHKRCQVLILARGGGSIEDLWAFNDEYLARQIAISEIPVVSGIGHETD HHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHCCCHHHHHHHHHHHHCCEECCCCCCCC FTIADFVADYRAETPTAAATAVTPNCIELFNILDTAIYRLHDAIIRLVKGLQLKLNHLID CHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KIASPRQTISTYWQTLDYLERQLISAMTQFINLNINKMNLFSTRLQANNPKTQIERTKIQ HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHCCCCCHHHHHHHHHH LRQLILQLTQEIRIKVNQLKHQLSTNLSTLHAVSPLATLDRGYAIVSKNQRILFAAQQAQ HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHCCCEEEEECCCEEEEEECCCC IGDTIDVRLAKGSLACEVTQIKD CCCCEEEEEECCCEEEEEEECCC >Mature Secondary Structure SSQLPILTVSQLNRQVKGFLENEIGLVHVEGEISNLSKPSSGHYYFTLKDSTAQIRCAF CCCCCEEEHHHHHHHHHHHHCCCCEEEEECCCHHCCCCCCCCEEEEEEECCCCEEEEEE FKNRHSSSLLRNFNDGQQIVASGKLSLYEARGEYQLIVEEIVEAGMGILYQRFEELKIKL HHCCCHHHHHHCCCCCHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AREGLFNPERKKTLPRIPETIGIITSPTGAAIQDILSTLARRFPIARIIIYPSEVQGQAA HHHCCCCCHHHCCCCCCCHHHCEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCC PQQLVNALKLANTHKRCQVLILARGGGSIEDLWAFNDEYLARQIAISEIPVVSGIGHETD HHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHCCCHHHHHHHHHHHHCCEECCCCCCCC FTIADFVADYRAETPTAAATAVTPNCIELFNILDTAIYRLHDAIIRLVKGLQLKLNHLID CHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KIASPRQTISTYWQTLDYLERQLISAMTQFINLNINKMNLFSTRLQANNPKTQIERTKIQ HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHCCCCCHHHHHHHHHH LRQLILQLTQEIRIKVNQLKHQLSTNLSTLHAVSPLATLDRGYAIVSKNQRILFAAQQAQ HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCHHHHHCCCEEEEECCCEEEEEECCCC IGDTIDVRLAKGSLACEVTQIKD CCCCEEEEEECCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA