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The map label for this gene is yebA [H]

Identifier: 54293800

GI number: 54293800

Start: 971758

End: 972660

Strand: Reverse

Name: yebA [H]

Synonym: lpl0856

Alternate gene names: 54293800

Gene position: 972660-971758 (Counterclockwise)

Preceding gene: 54293801

Following gene: 54293799

Centisome position: 29.07

GC content: 39.09

Gene sequence:

>903_bases
ATGAAGAAACTATTACATTCACTTGCCTGTCTATTGATATTAATAAGCTCTGCAAAATTATCCTATGGCCTGGCTCTACC
AGAAAATCATTCTGTTAATGGGGGACTGACTATTATTCCTATTGATGTCAATCAGAAGCCTGAAGCCTATTTCGAGGGGA
AACGCATTCCGGTTCTTCCCAGTACCCAACCCCGACAATGGTTATTAATCGTTGCAATCCCGCTTAAAAATACCAACTCG
GTTCAATACATCAACGTGACAAAACCCATCAAAGCATCTATTCCTTTTCATGTTAGTGAAAAATTTTACAGTACCCAATT
TTTAAATATAAAAGATATCAGTAAAGTAGACCCTCAACCTGAAGATTTAATCCGCATTGAAAAAGAAACCAAAAAATTAA
CCCAAATTTTTGCTAATTACTCAAACGCCAATCCATTTGAGAAACAATTCACAGCGCCACTGAGAGGGCCTGTAACCAGC
TTATTTGGTTTAAAAAGAGTTTATAATAAACAGCCAAGGGATCCGCATTCTGGACTGGACATCGCAGCTGACCAAGGGAA
ACCCGTGTATGCGGTAAATCAGGGGATTGTAGCAGACACCGGTGATTATTTTTTCACAGGCAATACGGTTATCATTGATC
ATGGCATGGGAGTATTCTCGGTTTATGCACATCTTAGCAAAATTCTGGTTAAAACAGGAGAAACAGTCAAACAAGGGCAA
GAGCTTGGATTAGTTGGTATGACAGGAAGAGTAACAGGCCCCCATCTCCACTGGACTATGGTAGTTAACCAAACTTTGGT
TGAGCCTTTACTTTTTGTACCGTTTCGTAAAATCACAGTTACACCAGTTATGCCAGATAAAAAATCAAACAAATCAACAC
AAGATGCAACGGTAAAATCATGA

Upstream 100 bases:

>100_bases
TTGCTGCCCAACAGGCACAAATTGGAGATACTATCGATGTCCGTTTAGCAAAAGGAAGTCTTGCTTGTGAGGTTACTCAA
ATTAAGGATTGACTAAAATC

Downstream 100 bases:

>100_bases
TTAACGAATTAACGGCCAGTTTGAATGTGATTGTCACTCAAACACAAAATAACCTGAAAATTTTGGGAGTAATACTACTA
ATTCCCTGGTCAATATTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MKKLLHSLACLLILISSAKLSYGLALPENHSVNGGLTIIPIDVNQKPEAYFEGKRIPVLPSTQPRQWLLIVAIPLKNTNS
VQYINVTKPIKASIPFHVSEKFYSTQFLNIKDISKVDPQPEDLIRIEKETKKLTQIFANYSNANPFEKQFTAPLRGPVTS
LFGLKRVYNKQPRDPHSGLDIAADQGKPVYAVNQGIVADTGDYFFTGNTVIIDHGMGVFSVYAHLSKILVKTGETVKQGQ
ELGLVGMTGRVTGPHLHWTMVVNQTLVEPLLFVPFRKITVTPVMPDKKSNKSTQDATVKS

Sequences:

>Translated_300_residues
MKKLLHSLACLLILISSAKLSYGLALPENHSVNGGLTIIPIDVNQKPEAYFEGKRIPVLPSTQPRQWLLIVAIPLKNTNS
VQYINVTKPIKASIPFHVSEKFYSTQFLNIKDISKVDPQPEDLIRIEKETKKLTQIFANYSNANPFEKQFTAPLRGPVTS
LFGLKRVYNKQPRDPHSGLDIAADQGKPVYAVNQGIVADTGDYFFTGNTVIIDHGMGVFSVYAHLSKILVKTGETVKQGQ
ELGLVGMTGRVTGPHLHWTMVVNQTLVEPLLFVPFRKITVTPVMPDKKSNKSTQDATVKS
>Mature_300_residues
MKKLLHSLACLLILISSAKLSYGLALPENHSVNGGLTIIPIDVNQKPEAYFEGKRIPVLPSTQPRQWLLIVAIPLKNTNS
VQYINVTKPIKASIPFHVSEKFYSTQFLNIKDISKVDPQPEDLIRIEKETKKLTQIFANYSNANPFEKQFTAPLRGPVTS
LFGLKRVYNKQPRDPHSGLDIAADQGKPVYAVNQGIVADTGDYFFTGNTVIIDHGMGVFSVYAHLSKILVKTGETVKQGQ
ELGLVGMTGRVTGPHLHWTMVVNQTLVEPLLFVPFRKITVTPVMPDKKSNKSTQDATVKS

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=161, Percent_Identity=37.2670807453416, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87082174, Length=98, Percent_Identity=33.6734693877551, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 33259; Mature: 33259

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLLHSLACLLILISSAKLSYGLALPENHSVNGGLTIIPIDVNQKPEAYFEGKRIPVLP
CHHHHHHHHHHHHHHHCCHHEEEEECCCCCCCCCCEEEEEECCCCCCHHHCCCCCCCCCC
STQPRQWLLIVAIPLKNTNSVQYINVTKPIKASIPFHVSEKFYSTQFLNIKDISKVDPQP
CCCCCEEEEEEEEECCCCCCEEEEEECCCEECCCCEEECCHHHCEEEECHHCHHHCCCCH
EDLIRIEKETKKLTQIFANYSNANPFEKQFTAPLRGPVTSLFGLKRVYNKQPRDPHSGLD
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCE
IAADQGKPVYAVNQGIVADTGDYFFTGNTVIIDHGMGVFSVYAHLSKILVKTGETVKQGQ
EEECCCCEEEEECCCEEEECCCEEEECCEEEEECCCHHHHHHHHHHHHHHHCCCHHHCCC
ELGLVGMTGRVTGPHLHWTMVVNQTLVEPLLFVPFRKITVTPVMPDKKSNKSTQDATVKS
CCCEEEECCCCCCCCEEEEEEECHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKLLHSLACLLILISSAKLSYGLALPENHSVNGGLTIIPIDVNQKPEAYFEGKRIPVLP
CHHHHHHHHHHHHHHHCCHHEEEEECCCCCCCCCCEEEEEECCCCCCHHHCCCCCCCCCC
STQPRQWLLIVAIPLKNTNSVQYINVTKPIKASIPFHVSEKFYSTQFLNIKDISKVDPQP
CCCCCEEEEEEEEECCCCCCEEEEEECCCEECCCCEEECCHHHCEEEECHHCHHHCCCCH
EDLIRIEKETKKLTQIFANYSNANPFEKQFTAPLRGPVTSLFGLKRVYNKQPRDPHSGLD
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCE
IAADQGKPVYAVNQGIVADTGDYFFTGNTVIIDHGMGVFSVYAHLSKILVKTGETVKQGQ
EEECCCCEEEEECCCEEEECCCEEEECCEEEEECCCHHHHHHHHHHHHHHHCCCHHHCCC
ELGLVGMTGRVTGPHLHWTMVVNQTLVEPLLFVPFRKITVTPVMPDKKSNKSTQDATVKS
CCCEEEECCCCCCCCEEEEEEECHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]