Definition Nocardia farcinica IFM 10152 chromosome, complete genome.
Accession NC_006361
Length 6,021,225

Click here to switch to the map view.

The map label for this gene is 54026261

Identifier: 54026261

GI number: 54026261

Start: 4443988

End: 4444827

Strand: Reverse

Name: 54026261

Synonym: nfa42900

Alternate gene names: NA

Gene position: 4444827-4443988 (Counterclockwise)

Preceding gene: 54026262

Following gene: 54026260

Centisome position: 73.82

GC content: 74.17

Gene sequence:

>840_bases
GTGAGTGAGACCAATTCGGCGGGCGCCCCGGCGTCGCAGGCGCCCCAGCCCAAGGACGCCTCGACGGTGATGCTGGTGCG
CGACAGCGCCCGCGGACCCGAGGTGTTCCTGCAGCGCCGCGTCGGCGGGATGGCCTTCGCGGCGGGCATGACGGTGTTCC
CGGGCGGCGGGGTCGACCCCTCCGACGCCACCGCCGACATCGCCTGGGCCGGCCCCGAACCGGCCTGGTGGGCACGCCGT
TTCGACACCACCGAGCCGCGGGTCAAGGCCCTGGTCTGCGCGGCGGTGCGGGAGACGTTCGAGGAATGCGGGGTGCTGCT
GGCCGGGCCGACCGCCGACACCGTCGTGGGCGACACCGCCGCCTACCGCGAAGCACGCGGGAAGTTGGAACGGCGCGAAC
TCTCGCTGGCCGCCTTCCTCGCCGAGGAGAAGCTCGTCCTGCGCGCGGATCTGCTGCGGCCGTGGGCGAATTGGATCACC
CCGGTGATCGAGCCGCGCCGCTACGACACCCGGTTCTTCGTCGCCGTGCTGCCCTCGGGCCAGCGCGCCGACGGCGCCAC
CTCCGAGGCCGCCGAGGTGCACTGGCGCACCCCCGCCGAGGAACTGGACCGCTGGCGCGAGGGCGTCGACATCCTGCTGC
CGCCCACCTGGGCTCAGCTGGACGCGCTCGCGGCCTTCGGCTCGACCGCCGAGATCCTGGCCGCCGAACCGGTGATCGAG
CCGATCATGCCGGTGTTGGCCCCCGCCGACGGCGCGCAGAAGCTGACGTTCCCCGACGGCGCCCGCTACTTCGCCGACCT
GCCGGAGGCGGGCAAGCTGCGCGGTTCGGCGCGCAGCTGA

Upstream 100 bases:

>100_bases
CCTCGACCGGATCGAAGGCCGCTGGTTCGCGCGGCGGGCGCGCCGGGCGGGCAGGCACCGCTCGCGCTGACGCCACAGTG
ACGCGGGCTATGGTGCTGGG

Downstream 100 bases:

>100_bases
GCGCCGGGCATCGCGCGGGCGCGGCTGCGCCGGGCGGTAGGTTGCCTGGTATGGCCGAATTCGTGACCCTGGGACAGCCG
GACGAGGACGGGGTCGCCGT

Product: hypothetical protein

Products: NA

Alternate protein names: Beta-Lactamase Domain-Containing Protein; NUDIX Family Hydrolase; NUDIX Family Protein; Beta-Lactamase-Like; NUDIX Domain-Containing Protein; Beta-Lactamase Domain Protein; Beta-Lactamase-Like Protein; NTP Pyrophosphohydrolase Including Oxidative Damage Repair; Nudix Hydrolase; NUDIX Protein; Phosphohydrolase; Zinc-Dependent Hydrolase; NUDIX/MutT Family Hydrolase; Hydrolase; NUDIX HydrolaseBeta-Lactamase-Like; Nudix Superfamily Hydrolase; Hydrolase NUDIX Family Domain Protein; Hydrolase NUDIX Family

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MSETNSAGAPASQAPQPKDASTVMLVRDSARGPEVFLQRRVGGMAFAAGMTVFPGGGVDPSDATADIAWAGPEPAWWARR
FDTTEPRVKALVCAAVRETFEECGVLLAGPTADTVVGDTAAYREARGKLERRELSLAAFLAEEKLVLRADLLRPWANWIT
PVIEPRRYDTRFFVAVLPSGQRADGATSEAAEVHWRTPAEELDRWREGVDILLPPTWAQLDALAAFGSTAEILAAEPVIE
PIMPVLAPADGAQKLTFPDGARYFADLPEAGKLRGSARS

Sequences:

>Translated_279_residues
MSETNSAGAPASQAPQPKDASTVMLVRDSARGPEVFLQRRVGGMAFAAGMTVFPGGGVDPSDATADIAWAGPEPAWWARR
FDTTEPRVKALVCAAVRETFEECGVLLAGPTADTVVGDTAAYREARGKLERRELSLAAFLAEEKLVLRADLLRPWANWIT
PVIEPRRYDTRFFVAVLPSGQRADGATSEAAEVHWRTPAEELDRWREGVDILLPPTWAQLDALAAFGSTAEILAAEPVIE
PIMPVLAPADGAQKLTFPDGARYFADLPEAGKLRGSARS
>Mature_278_residues
SETNSAGAPASQAPQPKDASTVMLVRDSARGPEVFLQRRVGGMAFAAGMTVFPGGGVDPSDATADIAWAGPEPAWWARRF
DTTEPRVKALVCAAVRETFEECGVLLAGPTADTVVGDTAAYREARGKLERRELSLAAFLAEEKLVLRADLLRPWANWITP
VIEPRRYDTRFFVAVLPSGQRADGATSEAAEVHWRTPAEELDRWREGVDILLPPTWAQLDALAAFGSTAEILAAEPVIEP
IMPVLAPADGAQKLTFPDGARYFADLPEAGKLRGSARS

Specific function: Unknown

COG id: COG0494

COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30025; Mature: 29894

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSETNSAGAPASQAPQPKDASTVMLVRDSARGPEVFLQRRVGGMAFAAGMTVFPGGGVDP
CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCEEEECCCEECCCCCCCC
SDATADIAWAGPEPAWWARRFDTTEPRVKALVCAAVRETFEECGVLLAGPTADTVVGDTA
CCCCEEEEECCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHCCHH
AYREARGKLERRELSLAAFLAEEKLVLRADLLRPWANWITPVIEPRRYDTRFFVAVLPSG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
QRADGATSEAAEVHWRTPAEELDRWREGVDILLPPTWAQLDALAAFGSTAEILAAEPVIE
CCCCCCCCCHHHEEECCCHHHHHHHHCCCEEEECCCHHHHHHHHHCCCCHHHHHHCHHHH
PIMPVLAPADGAQKLTFPDGARYFADLPEAGKLRGSARS
HHHHHHCCCCCCCEECCCCCCHHHHCCCCHHCCCCCCCC
>Mature Secondary Structure 
SETNSAGAPASQAPQPKDASTVMLVRDSARGPEVFLQRRVGGMAFAAGMTVFPGGGVDP
CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCEEEECCCEECCCCCCCC
SDATADIAWAGPEPAWWARRFDTTEPRVKALVCAAVRETFEECGVLLAGPTADTVVGDTA
CCCCEEEEECCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHCCHH
AYREARGKLERRELSLAAFLAEEKLVLRADLLRPWANWITPVIEPRRYDTRFFVAVLPSG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
QRADGATSEAAEVHWRTPAEELDRWREGVDILLPPTWAQLDALAAFGSTAEILAAEPVIE
CCCCCCCCCHHHEEECCCHHHHHHHHCCCEEEECCCHHHHHHHHHCCCCHHHHHHCHHHH
PIMPVLAPADGAQKLTFPDGARYFADLPEAGKLRGSARS
HHHHHHCCCCCCCEECCCCCCHHHHCCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA