Definition Symbiobacterium thermophilum IAM 14863 chromosome, complete genome.
Accession NC_006177
Length 3,566,135

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The map label for this gene is yfiZ [H]

Identifier: 51892423

GI number: 51892423

Start: 1423960

End: 1424973

Strand: Reverse

Name: yfiZ [H]

Synonym: STH1285

Alternate gene names: 51892423

Gene position: 1424973-1423960 (Counterclockwise)

Preceding gene: 51892424

Following gene: 51892422

Centisome position: 39.96

GC content: 71.99

Gene sequence:

>1014_bases
ATGTCATCCCGTAACCCGGCGAAGGTCCATCGGCCGGCAGCCCTGCTGCTGCTGGCCGGCGTCCTTGTCCTCGTGGCGCT
GTTGAGCCTGCGGGTGGGCTCGATCCCGGTCTCCACCGCCGACGCGGTGGCCGCGCTCACCCGCTACGACCCTGACAATT
ACAGCCAGCTCGTGGTGCGCACCATGCGCCTGCCGCGCACCGTGATCGGCCTGGGGGTGGGCGCCGCGCTGGCCGCAGCC
GGGGCGGCCATGCAGGCCGCCACCCGGAACCCGCTGGCGGAGCCCTCCCTGCTGGGCGTGAACGCCGGCGCGTCCTTCGC
GATCGTCGCCGCCGTCTACTTCGGCCACATGACCCACCCGCTCCAGTATCTCTGGTTCGCCTTCGCCGGCGCCCTGGGCG
CCGCGGTGCTGGTCTACGCCATCGCCTCGGCCGGGGGCGGGGCATCGCCGGTGAAGCTGGCGCTGGCAGGCGTCATCGTC
AGCGCCCTCCTGGGCTCGTGGACCACCGCGCTGCTGATCCTGAACAAGGAGACGCTGGAGATGGTGCGCTTCTGGCTGGC
CGGCTCACTGGCCGGCCGCAGCCTGAACCTGCTCCCGCCGGTCGCCCCCTTCCTGGCGGCGGGGCTCCTGGGCGTCCTCC
TGGTAGGACGGCAGCTGAACACCCTCAGCCTCGGCGAGGAAACGGCCCGGTCGCTGGGGATGCACACGGGGCGCATGCGG
GCGCTGGTCGCCGTCCTGGTGATGCTGCTGGCCGGATCGGCGGTGGCGCTGGCGGGTCCCGTCGGTTTCGTGGGGCTTGC
GGTGCCCCACATCGTCCGGGCGTGGATCGGCGCCGATTACCGCTGGATCCTCCCCTTCTGCCTGGTCCTGGGTCCGGCAC
TGCTCCTGGGTGCGGACATCCTCGGCCGGGTGATGATGCGTCCGGCGGAGGTACAGGTCGGCGTCGTGACGGCCTTGGTA
GGCGCCCCTTTCCTGATCTACTTGGCGCGGCGCCGGCAGGTGGCGGAGCCATGA

Upstream 100 bases:

>100_bases
GGGCAGGTCTACCCGTGGGTGGCCGTTCCCCCGTACAGCTGGGACGGTCTGGCGACCATCCTGGAGGACGTGGCGGCGGC
GGTGCGCGAGGCGGATCCGC

Downstream 100 bases:

>100_bases
GCGCCCGTCGCCTTCGCCTCGTACAGGCCGGCCCCTTCGCCTTCCGGGTCGATCCGGGGATGGTCGCCCGCGTGGCCGGG
GCCTGGCTGGCGCTGCTGGC

Product: iron ABC transporter permease protein

Products: ADP; phosphate; ferric enterobactin [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MSSRNPAKVHRPAALLLLAGVLVLVALLSLRVGSIPVSTADAVAALTRYDPDNYSQLVVRTMRLPRTVIGLGVGAALAAA
GAAMQAATRNPLAEPSLLGVNAGASFAIVAAVYFGHMTHPLQYLWFAFAGALGAAVLVYAIASAGGGASPVKLALAGVIV
SALLGSWTTALLILNKETLEMVRFWLAGSLAGRSLNLLPPVAPFLAAGLLGVLLVGRQLNTLSLGEETARSLGMHTGRMR
ALVAVLVMLLAGSAVALAGPVGFVGLAVPHIVRAWIGADYRWILPFCLVLGPALLLGADILGRVMMRPAEVQVGVVTALV
GAPFLIYLARRRQVAEP

Sequences:

>Translated_337_residues
MSSRNPAKVHRPAALLLLAGVLVLVALLSLRVGSIPVSTADAVAALTRYDPDNYSQLVVRTMRLPRTVIGLGVGAALAAA
GAAMQAATRNPLAEPSLLGVNAGASFAIVAAVYFGHMTHPLQYLWFAFAGALGAAVLVYAIASAGGGASPVKLALAGVIV
SALLGSWTTALLILNKETLEMVRFWLAGSLAGRSLNLLPPVAPFLAAGLLGVLLVGRQLNTLSLGEETARSLGMHTGRMR
ALVAVLVMLLAGSAVALAGPVGFVGLAVPHIVRAWIGADYRWILPFCLVLGPALLLGADILGRVMMRPAEVQVGVVTALV
GAPFLIYLARRRQVAEP
>Mature_336_residues
SSRNPAKVHRPAALLLLAGVLVLVALLSLRVGSIPVSTADAVAALTRYDPDNYSQLVVRTMRLPRTVIGLGVGAALAAAG
AAMQAATRNPLAEPSLLGVNAGASFAIVAAVYFGHMTHPLQYLWFAFAGALGAAVLVYAIASAGGGASPVKLALAGVIVS
ALLGSWTTALLILNKETLEMVRFWLAGSLAGRSLNLLPPVAPFLAAGLLGVLLVGRQLNTLSLGEETARSLGMHTGRMRA
LVAVLVMLLAGSAVALAGPVGFVGLAVPHIVRAWIGADYRWILPFCLVLGPALLLGADILGRVMMRPAEVQVGVVTALVG
APFLIYLARRRQVAEP

Specific function: Part of the ABC transporter complex yfiYZ/yfhA/yusV involved in import of the iron-hydroxamate siderophores schizokinen, arthrobactin and corprogen (Probable) [H]

COG id: COG0609

COG function: function code P; ABC-type Fe3+-siderophore transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786805, Length=278, Percent_Identity=50.7194244604317, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1790741, Length=316, Percent_Identity=37.9746835443038, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1790740, Length=313, Percent_Identity=37.3801916932907, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI1788004, Length=279, Percent_Identity=39.7849462365591, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI1786804, Length=315, Percent_Identity=35.2380952380952, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1786347, Length=285, Percent_Identity=32.6315789473684, Blast_Score=108, Evalue=7e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000522 [H]

Pfam domain/function: PF01032 FecCD [H]

EC number: NA

Molecular weight: Translated: 34789; Mature: 34658

Theoretical pI: Translated: 11.28; Mature: 11.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSRNPAKVHRPAALLLLAGVLVLVALLSLRVGSIPVSTADAVAALTRYDPDNYSQLVVR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHH
TMRLPRTVIGLGVGAALAAAGAAMQAATRNPLAEPSLLGVNAGASFAIVAAVYFGHMTHP
HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHH
LQYLWFAFAGALGAAVLVYAIASAGGGASPVKLALAGVIVSALLGSWTTALLILNKETLE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECHHHHH
MVRFWLAGSLAGRSLNLLPPVAPFLAAGLLGVLLVGRQLNTLSLGEETARSLGMHTGRMR
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHCCCHHHHH
ALVAVLVMLLAGSAVALAGPVGFVGLAVPHIVRAWIGADYRWILPFCLVLGPALLLGADI
HHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
LGRVMMRPAEVQVGVVTALVGAPFLIYLARRRQVAEP
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SSRNPAKVHRPAALLLLAGVLVLVALLSLRVGSIPVSTADAVAALTRYDPDNYSQLVVR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHH
TMRLPRTVIGLGVGAALAAAGAAMQAATRNPLAEPSLLGVNAGASFAIVAAVYFGHMTHP
HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHH
LQYLWFAFAGALGAAVLVYAIASAGGGASPVKLALAGVIVSALLGSWTTALLILNKETLE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECHHHHH
MVRFWLAGSLAGRSLNLLPPVAPFLAAGLLGVLLVGRQLNTLSLGEETARSLGMHTGRMR
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHCCCHHHHH
ALVAVLVMLLAGSAVALAGPVGFVGLAVPHIVRAWIGADYRWILPFCLVLGPALLLGADI
HHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
LGRVMMRPAEVQVGVVTALVGAPFLIYLARRRQVAEP
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ferric enterobactin [Periplasm]; H2O [C]

Specific reaction: ATP + ferric enterobactin [Periplasm] + H2O = ADP + phosphate + ferric enterobactin [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8946165; 9384377 [H]