Definition Candidatus Protochlamydia amoebophila UWE25, complete genome.
Accession NC_005861
Length 2,414,465

Click here to switch to the map view.

The map label for this gene is 46446818

Identifier: 46446818

GI number: 46446818

Start: 1412895

End: 1414538

Strand: Reverse

Name: 46446818

Synonym: pc1184

Alternate gene names: NA

Gene position: 1414538-1412895 (Counterclockwise)

Preceding gene: 46446822

Following gene: 46446817

Centisome position: 58.59

GC content: 31.14

Gene sequence:

>1644_bases
ATGAAACTTCGATCTCTTTTTTTTAGCTTACTTTTTATAAGTCTCAGTATCTTACTTTTATTTTTTCTTGTTAGAGCTTG
GATGCAAAAAGATATTTTTGAAGAAGATCAAAACCTTGTTTGGGTAGGGGCTATTATCGACAATCATGATCAATTGATTC
CTCCTTTTCTACTAACGATCGAAAAATTGTATTATGATAAAGCAAAAATGCATTTGCAAATAGATTGTTGTAATCAAAAT
AAGCATGTAAGAAAAATTGTGATGCAGTGGGTTGAAAAAAATAGGAAATTTTATCAGAGTCTTGTTTTTGTGGATCATAC
TTCAAGTATAGATGAAAAAAAACATTTTATTGAAAAAAATAAAGTGCTTGCAAATATTAAAAATGGGTATTTGGCTAATT
GTCAACAGCAAAGCTGCAATTATTGTTTGATATTATCTTCCGATATGCTTATTGCTCCTCATACGTTAAAATACCTAATA
GAAAAAGATAAGCCCATTATTAGCCCACTTTTAAGACCTTTTCCACAACCTCATGATCCTTACCGTAATTTTTTTTGCGA
TGTAACGGAAGAGGGATATTACAAACACCATGAAGACTATCTAGCAATTGCAAATCGACAAAAACTTGGAACTTTTCAAG
TCCCTTGTGTGCATGGTGTTTATTTGATTCAAGCTCCATTCTTAAGTCAGCTGAGCTTTACCGAAGGATTTAAAAATTAT
GAATTTTTAGCATTTTCTACATATGCTCGAAAAAAAAATATGGGTCAATTCATTTGCAATGAAAGGGAATTTGGCTTTCT
CATGCATTTAAGCGATGATGCAACATTAGATCAACAGAAAAACTTTAAATTAGTGAATGCAGAAAAAGAAATTACACCTG
CAATTTTTCATTCCATTCTTTCTCCTTATTTTACAAACGACTTTTATTTGAGTGAAATTGCAAAAGATTTTAATCTGGAT
CAATACCAAATTTATCGTGTTTGCAATCGAGAACTTTTTTTATTAGACGAAAACAATGATCGCATTAAAAGTCATACCAT
TAAGCAAGGTGCCAATTGGGAAGAACATTTTTATTCTCAATTTCAAAAATATGTAAAACCGGACACAATTGCGATCGATG
TGGGTGCACATATAGGAACACACGCCTTAGCTCTCTCAAAATTAGTAGGAGAAAAAGGAAAGGTTTATGCATTCGAACCA
CAAGCCAAAATATTTTGTGAACTCGCCATCAATATGTATTTAAATAATTGTCATCAGGTAGAGCTTTTTCACAAAGCTTT
AGGGGTAAAAAAGGAGTGGAAAGCAATGCATATTCTTAAAGAAGGATATGAAATTGTTTCTTCTCCTTTTTATTTAGACA
ATAAAAATAAAGTCCAAATTGTCGAGCTAGATAATTTTCATTTACACAATATTTCATTGATTAAAATCAATGTAGAAGAA
TTTGTAATGGAAATTTTAGCCGGAGGATGGGAAACAATCCAAAGAAATAAACCTGTCATGATCGTCAAAATCTCTAATAA
CGAGCAAAAACAAAATAAAATTCAAACCATTGAAAGTTTTGGATATGCCAGTTCAAAATTATCCGGTAATGATTATTTAT
TTATCCCGTTAGCACAGTTAGGATTGCTAGAAGAACCAAATTAA

Upstream 100 bases:

>100_bases
TAGTGAATTTTAGGCGAACTCTAAATTTTTTTCTTTTCGCATAAAATTTCTCGGCCATTACAAATTTCTCAATTAATTTA
GCATCCAAAAATAAGGCTTT

Downstream 100 bases:

>100_bases
AATGATACCTAATTACTCATGAAAATAGCATTCATATATTTCCATTATTGTTTATTCTTCTTTACCCCTATTTTATCAGC
GCAAAATTCAACACCTGCTA

Product: hypothetical protein

Products: NA

Alternate protein names: Methyltransferase FkbM Family; Glycosyl Transferase Family Protein; SAM-Dependent Methyltransferase; Procollagen-Lysine 5-Dioxygenase

Number of amino acids: Translated: 547; Mature: 547

Protein sequence:

>547_residues
MKLRSLFFSLLFISLSILLLFFLVRAWMQKDIFEEDQNLVWVGAIIDNHDQLIPPFLLTIEKLYYDKAKMHLQIDCCNQN
KHVRKIVMQWVEKNRKFYQSLVFVDHTSSIDEKKHFIEKNKVLANIKNGYLANCQQQSCNYCLILSSDMLIAPHTLKYLI
EKDKPIISPLLRPFPQPHDPYRNFFCDVTEEGYYKHHEDYLAIANRQKLGTFQVPCVHGVYLIQAPFLSQLSFTEGFKNY
EFLAFSTYARKKNMGQFICNEREFGFLMHLSDDATLDQQKNFKLVNAEKEITPAIFHSILSPYFTNDFYLSEIAKDFNLD
QYQIYRVCNRELFLLDENNDRIKSHTIKQGANWEEHFYSQFQKYVKPDTIAIDVGAHIGTHALALSKLVGEKGKVYAFEP
QAKIFCELAINMYLNNCHQVELFHKALGVKKEWKAMHILKEGYEIVSSPFYLDNKNKVQIVELDNFHLHNISLIKINVEE
FVMEILAGGWETIQRNKPVMIVKISNNEQKQNKIQTIESFGYASSKLSGNDYLFIPLAQLGLLEEPN

Sequences:

>Translated_547_residues
MKLRSLFFSLLFISLSILLLFFLVRAWMQKDIFEEDQNLVWVGAIIDNHDQLIPPFLLTIEKLYYDKAKMHLQIDCCNQN
KHVRKIVMQWVEKNRKFYQSLVFVDHTSSIDEKKHFIEKNKVLANIKNGYLANCQQQSCNYCLILSSDMLIAPHTLKYLI
EKDKPIISPLLRPFPQPHDPYRNFFCDVTEEGYYKHHEDYLAIANRQKLGTFQVPCVHGVYLIQAPFLSQLSFTEGFKNY
EFLAFSTYARKKNMGQFICNEREFGFLMHLSDDATLDQQKNFKLVNAEKEITPAIFHSILSPYFTNDFYLSEIAKDFNLD
QYQIYRVCNRELFLLDENNDRIKSHTIKQGANWEEHFYSQFQKYVKPDTIAIDVGAHIGTHALALSKLVGEKGKVYAFEP
QAKIFCELAINMYLNNCHQVELFHKALGVKKEWKAMHILKEGYEIVSSPFYLDNKNKVQIVELDNFHLHNISLIKINVEE
FVMEILAGGWETIQRNKPVMIVKISNNEQKQNKIQTIESFGYASSKLSGNDYLFIPLAQLGLLEEPN
>Mature_547_residues
MKLRSLFFSLLFISLSILLLFFLVRAWMQKDIFEEDQNLVWVGAIIDNHDQLIPPFLLTIEKLYYDKAKMHLQIDCCNQN
KHVRKIVMQWVEKNRKFYQSLVFVDHTSSIDEKKHFIEKNKVLANIKNGYLANCQQQSCNYCLILSSDMLIAPHTLKYLI
EKDKPIISPLLRPFPQPHDPYRNFFCDVTEEGYYKHHEDYLAIANRQKLGTFQVPCVHGVYLIQAPFLSQLSFTEGFKNY
EFLAFSTYARKKNMGQFICNEREFGFLMHLSDDATLDQQKNFKLVNAEKEITPAIFHSILSPYFTNDFYLSEIAKDFNLD
QYQIYRVCNRELFLLDENNDRIKSHTIKQGANWEEHFYSQFQKYVKPDTIAIDVGAHIGTHALALSKLVGEKGKVYAFEP
QAKIFCELAINMYLNNCHQVELFHKALGVKKEWKAMHILKEGYEIVSSPFYLDNKNKVQIVELDNFHLHNISLIKINVEE
FVMEILAGGWETIQRNKPVMIVKISNNEQKQNKIQTIESFGYASSKLSGNDYLFIPLAQLGLLEEPN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI193788560, Length=234, Percent_Identity=25.6410256410256, Blast_Score=95, Evalue=2e-19,
Organism=Homo sapiens, GI16506820, Length=242, Percent_Identity=24.7933884297521, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI31377697, Length=267, Percent_Identity=25.4681647940075, Blast_Score=91, Evalue=4e-18,
Organism=Homo sapiens, GI32307144, Length=247, Percent_Identity=25.9109311740891, Blast_Score=80, Evalue=5e-15,
Organism=Homo sapiens, GI62739166, Length=247, Percent_Identity=27.5303643724696, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI33636742, Length=199, Percent_Identity=28.643216080402, Blast_Score=67, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24581946, Length=295, Percent_Identity=23.0508474576271, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24662595, Length=247, Percent_Identity=27.5303643724696, Blast_Score=70, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24662591, Length=247, Percent_Identity=27.5303643724696, Blast_Score=70, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 63960; Mature: 63960

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLRSLFFSLLFISLSILLLFFLVRAWMQKDIFEEDQNLVWVGAIIDNHDQLIPPFLLTI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHH
EKLYYDKAKMHLQIDCCNQNKHVRKIVMQWVEKNRKFYQSLVFVDHTSSIDEKKHFIEKN
HHHHHCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHH
KVLANIKNGYLANCQQQSCNYCLILSSDMLIAPHTLKYLIEKDKPIISPLLRPFPQPHDP
HHHEECCCCCCCCCHHCCCCEEEEECCCCEECCHHHHHHHHCCCCHHHHHHHCCCCCCCC
YRNFFCDVTEEGYYKHHEDYLAIANRQKLGTFQVPCVHGVYLIQAPFLSQLSFTEGFKNY
HHHHEECCCCCCCCCCCCCHHEECCCCCCCCEECCHHCCEEEEECHHHHHHHHHCCCCCC
EFLAFSTYARKKNMGQFICNEREFGFLMHLSDDATLDQQKNFKLVNAEKEITPAIFHSIL
EEEEEEHHHHHCCCHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCHHCCHHHHHHHH
SPYFTNDFYLSEIAKDFNLDQYQIYRVCNRELFLLDENNDRIKSHTIKQGANWEEHFYSQ
HHHHCCCHHHHHHHHHCCCCHHHHHHHHCCEEEEEECCCCCHHHHHHHCCCCHHHHHHHH
FQKYVKPDTIAIDVGAHIGTHALALSKLVGEKGKVYAFEPQAKIFCELAINMYLNNCHQV
HHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCHHH
ELFHKALGVKKEWKAMHILKEGYEIVSSPFYLDNKNKVQIVELDNFHLHNISLIKINVEE
HHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCEEEEEEEEEEEEHHH
FVMEILAGGWETIQRNKPVMIVKISNNEQKQNKIQTIESFGYASSKLSGNDYLFIPLAQL
HHHHHHHCCHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHC
GLLEEPN
CCCCCCC
>Mature Secondary Structure
MKLRSLFFSLLFISLSILLLFFLVRAWMQKDIFEEDQNLVWVGAIIDNHDQLIPPFLLTI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHH
EKLYYDKAKMHLQIDCCNQNKHVRKIVMQWVEKNRKFYQSLVFVDHTSSIDEKKHFIEKN
HHHHHCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHH
KVLANIKNGYLANCQQQSCNYCLILSSDMLIAPHTLKYLIEKDKPIISPLLRPFPQPHDP
HHHEECCCCCCCCCHHCCCCEEEEECCCCEECCHHHHHHHHCCCCHHHHHHHCCCCCCCC
YRNFFCDVTEEGYYKHHEDYLAIANRQKLGTFQVPCVHGVYLIQAPFLSQLSFTEGFKNY
HHHHEECCCCCCCCCCCCCHHEECCCCCCCCEECCHHCCEEEEECHHHHHHHHHCCCCCC
EFLAFSTYARKKNMGQFICNEREFGFLMHLSDDATLDQQKNFKLVNAEKEITPAIFHSIL
EEEEEEHHHHHCCCHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCHHCCHHHHHHHH
SPYFTNDFYLSEIAKDFNLDQYQIYRVCNRELFLLDENNDRIKSHTIKQGANWEEHFYSQ
HHHHCCCHHHHHHHHHCCCCHHHHHHHHCCEEEEEECCCCCHHHHHHHCCCCHHHHHHHH
FQKYVKPDTIAIDVGAHIGTHALALSKLVGEKGKVYAFEPQAKIFCELAINMYLNNCHQV
HHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCHHH
ELFHKALGVKKEWKAMHILKEGYEIVSSPFYLDNKNKVQIVELDNFHLHNISLIKINVEE
HHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCEEEEEEEEEEEEHHH
FVMEILAGGWETIQRNKPVMIVKISNNEQKQNKIQTIESFGYASSKLSGNDYLFIPLAQL
HHHHHHHCCHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHC
GLLEEPN
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA