| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42521740
Identifier: 42521740
GI number: 42521740
Start: 88821
End: 89933
Strand: Direct
Name: 42521740
Synonym: Bd0095
Alternate gene names: NA
Gene position: 88821-89933 (Clockwise)
Preceding gene: 42521739
Following gene: 42521741
Centisome position: 2.35
GC content: 48.97
Gene sequence:
>1113_bases ATGAAGCTTTGGATTTTCAGCGCGTTGATTCTTCCCGTTCAAGTTCTGGCTTCGGCCCCGGCTTTTCAAGAGTCCATTTC TGGCATCAATCCTCACCTAAAAAAATCCCCGAAATTTGAAATCCCTGTCGCCAACGACAAGGACCTGTACCTGCGCATGG AAAAGGCACTGACCTCGGAACATCCCGAGCAGTCTTTGCGCATTTTGGCCGAAGAAGGTGACTTCACCACATGCTCAGCC TTTCAGGCCACGGCACCTTCCGGTTTGCTGCCGATGACGGGGCTTTTGGACATTTCAAAAAAACTCAATGACGAGGCGAT CGCCGCAAAATCCTGGGAACAAAGTCTGAAGCTGGCGAATCTGTGGTGGCACTTTGGCAATTGTGAAATGCCGGTGATCA CCGGACAGATCGGCATGGCACTTTTGAAGGATTCCCTGACGGAAATGGCGAAACTTTCCAAAGAAAATATGAGTGATGAA GATCGCACAAAGTTGTCTGAGTTAAAACGCAACATCAAGGATTGGAATCCTTCCGCCCACTTGGAAAAAGAACTTCGTTT TGAGATGGTCTTAACCCCCGCTTTGCTGCTGCCCGAGCTGAAATCGGGAAAGTTTGAATTTAACAAAGAAGAGCTTGAAG AAGAAAGTTCGGAAGAAACCGCGTTGGTTGGATTTCCGGGCCTGATCAAACTTTTGTATCCGGATGGTTATGGCACCTTT GACTGGAGTGAAGGGGCAAAACCCGTGGCGGCGGCGGTGGATCAAATCAAGGGCGCGAAAAATCCAGCGGCCGCGATGGG AAAGGCCGTTGATGAGCAGGAAGCAAAATATTTGAAATCCTTCTATGAACAACTGAGCCTGCGCGATCAGGGGGTGAAGT CTGTGAAGGATCTATTGAAAGATGCGAAAGCCACCGCGCTGATTGAAACTTTGCAAAAAGACGAAGAGCTGCTGAAGGCA AAACGCGAGCTGGCGCAAATCTATAAAGACAAATCCGCCTTCATGATGGCAGTGCTGGTTTTCAAACGGACGACGCCGAA CTTTTCCAGATCCATCGATAAAAAAGCGCATTCCCTGCACAAGGATCTGATCCGACTCAGCAAGCCTTTGTAA
Upstream 100 bases:
>100_bases TTTAGATTGTGATTAAGAAAACCAAGTCCATAAGACTTGGTTTTTTTATTTTTACCCCCTGTAAAATTCGATAGCATGGA ATCTCCAAAAGGAGTTTGCC
Downstream 100 bases:
>100_bases GTCTCGAATGGCCCGGGGGCCCAATCCGGGCCCGCCTTTGTATCAATTTCCTGTAAAGCCTATTTTGTCTCAAAGTGACC CAAAAGGGCCTCTTTTCGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 370; Mature: 370
Protein sequence:
>370_residues MKLWIFSALILPVQVLASAPAFQESISGINPHLKKSPKFEIPVANDKDLYLRMEKALTSEHPEQSLRILAEEGDFTTCSA FQATAPSGLLPMTGLLDISKKLNDEAIAAKSWEQSLKLANLWWHFGNCEMPVITGQIGMALLKDSLTEMAKLSKENMSDE DRTKLSELKRNIKDWNPSAHLEKELRFEMVLTPALLLPELKSGKFEFNKEELEEESSEETALVGFPGLIKLLYPDGYGTF DWSEGAKPVAAAVDQIKGAKNPAAAMGKAVDEQEAKYLKSFYEQLSLRDQGVKSVKDLLKDAKATALIETLQKDEELLKA KRELAQIYKDKSAFMMAVLVFKRTTPNFSRSIDKKAHSLHKDLIRLSKPL
Sequences:
>Translated_370_residues MKLWIFSALILPVQVLASAPAFQESISGINPHLKKSPKFEIPVANDKDLYLRMEKALTSEHPEQSLRILAEEGDFTTCSA FQATAPSGLLPMTGLLDISKKLNDEAIAAKSWEQSLKLANLWWHFGNCEMPVITGQIGMALLKDSLTEMAKLSKENMSDE DRTKLSELKRNIKDWNPSAHLEKELRFEMVLTPALLLPELKSGKFEFNKEELEEESSEETALVGFPGLIKLLYPDGYGTF DWSEGAKPVAAAVDQIKGAKNPAAAMGKAVDEQEAKYLKSFYEQLSLRDQGVKSVKDLLKDAKATALIETLQKDEELLKA KRELAQIYKDKSAFMMAVLVFKRTTPNFSRSIDKKAHSLHKDLIRLSKPL >Mature_370_residues MKLWIFSALILPVQVLASAPAFQESISGINPHLKKSPKFEIPVANDKDLYLRMEKALTSEHPEQSLRILAEEGDFTTCSA FQATAPSGLLPMTGLLDISKKLNDEAIAAKSWEQSLKLANLWWHFGNCEMPVITGQIGMALLKDSLTEMAKLSKENMSDE DRTKLSELKRNIKDWNPSAHLEKELRFEMVLTPALLLPELKSGKFEFNKEELEEESSEETALVGFPGLIKLLYPDGYGTF DWSEGAKPVAAAVDQIKGAKNPAAAMGKAVDEQEAKYLKSFYEQLSLRDQGVKSVKDLLKDAKATALIETLQKDEELLKA KRELAQIYKDKSAFMMAVLVFKRTTPNFSRSIDKKAHSLHKDLIRLSKPL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41412; Mature: 41412
Theoretical pI: Translated: 6.54; Mature: 6.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLWIFSALILPVQVLASAPAFQESISGINPHLKKSPKFEIPVANDKDLYLRMEKALTSE CCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHCCC HPEQSLRILAEEGDFTTCSAFQATAPSGLLPMTGLLDISKKLNDEAIAAKSWEQSLKLAN CCHHHHHHHHCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH LWWHFGNCEMPVITGQIGMALLKDSLTEMAKLSKENMSDEDRTKLSELKRNIKDWNPSAH HHEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHH LEKELRFEMVLTPALLLPELKSGKFEFNKEELEEESSEETALVGFPGLIKLLYPDGYGTF HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCEEEEECHHHHHEEECCCCCCC DWSEGAKPVAAAVDQIKGAKNPAAAMGKAVDEQEAKYLKSFYEQLSLRDQGVKSVKDLLK CCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DAKATALIETLQKDEELLKAKRELAQIYKDKSAFMMAVLVFKRTTPNFSRSIDKKAHSLH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH KDLIRLSKPL HHHHHHCCCC >Mature Secondary Structure MKLWIFSALILPVQVLASAPAFQESISGINPHLKKSPKFEIPVANDKDLYLRMEKALTSE CCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHCCC HPEQSLRILAEEGDFTTCSAFQATAPSGLLPMTGLLDISKKLNDEAIAAKSWEQSLKLAN CCHHHHHHHHCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH LWWHFGNCEMPVITGQIGMALLKDSLTEMAKLSKENMSDEDRTKLSELKRNIKDWNPSAH HHEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHH LEKELRFEMVLTPALLLPELKSGKFEFNKEELEEESSEETALVGFPGLIKLLYPDGYGTF HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCEEEEECHHHHHEEECCCCCCC DWSEGAKPVAAAVDQIKGAKNPAAAMGKAVDEQEAKYLKSFYEQLSLRDQGVKSVKDLLK CCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DAKATALIETLQKDEELLKAKRELAQIYKDKSAFMMAVLVFKRTTPNFSRSIDKKAHSLH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH KDLIRLSKPL HHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA