| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
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The map label for this gene is 42521710
Identifier: 42521710
GI number: 42521710
Start: 57326
End: 58705
Strand: Direct
Name: 42521710
Synonym: Bd0063
Alternate gene names: NA
Gene position: 57326-58705 (Clockwise)
Preceding gene: 42521709
Following gene: 42521712
Centisome position: 1.52
GC content: 53.33
Gene sequence:
>1380_bases GTGGCATCAATCAAGGATGAATACATGATGAAAAAACTCGTTATCTTACTAGCGTGCCTAGGTCTGGCATTCCAAGTAAC AAGCTGTACGTCTAAAGATAGCCAAGCAGATGCGGAAGTTGCTTCCGACTTCGATTCCGCAGACCTTGAAAAACTAGAAG GTGATGACGCCCTTGAAATTGCTGGTGACGACTCTTTGGCCAGCGACCAACTTCCAGAAGATGCTCTGGGTGAAACCACC ACGACCACCGAAACAACCACAACAACTGCTGAAACGACTCTAGGTGATGATCAGGCGACAACCGAACAGACCGACGTCGC AACAACCACCGAAACATTGCCAGCAGATCCGTTTGCAGAAGCACCGGCGGCGGACGTTCCGGCTCCGACAACGACTGTGG CTGAAACAACGACCGCGACAGACACTTCTTCCAACTCTGTTTTTGAAAGCTCTACGGTGACTGAATCCTCCACAACAGTG GTTGATTCCTCTTCTGAGGCTCCGAAGAAGGCCAGCGCGCCTTTGCAGAAGGTGGCAACGACTCCTTGGAAAGCCGGCGG CACTTGGTTCAACACCGTTTACTTCGCTCGTCCGGGTGACACTCTGAAGGGTATCAGTCAGATGATCTATGGCGCTGACA AGCGCAAAGAACTGAAAAAAGGCAATCCGACCTTCCATTCCCGTGATGTTCGTGCCGGTGACAAGGTTTATTACAACTCT CCCAACCGTCCGGACGATTCTGCCCGCATGATCACTTACTACGAAGACAACGGCATTGCGCCAGAGACTTACGTGGCTAA ATCCGGAGACAATATCAGAACTGTTTCCAAAAACCTTCTGGGTTATGACAATGCCTGGAAAGAAGTTTGGTCATCCAACT CTGTAGATTCCAAAGGCAACATCGCAGAAGGCACTGAGCTTCGATTCTGGAGAGGCGGCGCTGTCGCTGCAGCTCCGGCT CCGGCGCAACCTGCGATGGAACAACCGCACCAGGAAGTGGCTGGCAACATGGCACAGGCTCCGGCAGAAGAGATCCCGGC TCCACCAATGCCGGAAGATCCAATGGCTCAGCAACAGGCTCAGATGGACATCCCGCCTCCGCCGATGGAGCCCGCGGGTG ATATGGCTCCGCCTCCTCCGCCGCCAGACATGGCTCAGGACATGGCGCCACCTCCACCACCACCAGTGGAAGCAATCAAC CCTCCAGCTCCGCAAGTGGCTGAAGAAGCTCCGACCGGCATGGACAACGACACAACAATGGCTTTGGCAGTTGTTGGTCT GGCAGCCGCAGGTTTGGCAGTCCTGATTGTGATGAGAAAGAAAAGAAAACAGAAAGAGCTTGAACAACAGGCGATGGACA ACACTCACGTAGGAACATAA
Upstream 100 bases:
>100_bases AGATCCACTAGATCAAAAGTCCAGTGATTTTCTTAGTGTTTGCATGACTTCGATCTTGTGCTTAGATTGTTAATAACGCT TAACTGAAACAGTATGTTTC
Downstream 100 bases:
>100_bases TCAGTTCCCGGGTTCTCCAAAAAAGAAAAGAGCGAGTTTTCACTCGCTCTTTTTGTTTTTGCGGATCTTATCCGACTTTT TTAAAGATCGTGTCCATCAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 459; Mature: 458
Protein sequence:
>459_residues MASIKDEYMMKKLVILLACLGLAFQVTSCTSKDSQADAEVASDFDSADLEKLEGDDALEIAGDDSLASDQLPEDALGETT TTTETTTTTAETTLGDDQATTEQTDVATTTETLPADPFAEAPAADVPAPTTTVAETTTATDTSSNSVFESSTVTESSTTV VDSSSEAPKKASAPLQKVATTPWKAGGTWFNTVYFARPGDTLKGISQMIYGADKRKELKKGNPTFHSRDVRAGDKVYYNS PNRPDDSARMITYYEDNGIAPETYVAKSGDNIRTVSKNLLGYDNAWKEVWSSNSVDSKGNIAEGTELRFWRGGAVAAAPA PAQPAMEQPHQEVAGNMAQAPAEEIPAPPMPEDPMAQQQAQMDIPPPPMEPAGDMAPPPPPPDMAQDMAPPPPPPVEAIN PPAPQVAEEAPTGMDNDTTMALAVVGLAAAGLAVLIVMRKKRKQKELEQQAMDNTHVGT
Sequences:
>Translated_459_residues MASIKDEYMMKKLVILLACLGLAFQVTSCTSKDSQADAEVASDFDSADLEKLEGDDALEIAGDDSLASDQLPEDALGETT TTTETTTTTAETTLGDDQATTEQTDVATTTETLPADPFAEAPAADVPAPTTTVAETTTATDTSSNSVFESSTVTESSTTV VDSSSEAPKKASAPLQKVATTPWKAGGTWFNTVYFARPGDTLKGISQMIYGADKRKELKKGNPTFHSRDVRAGDKVYYNS PNRPDDSARMITYYEDNGIAPETYVAKSGDNIRTVSKNLLGYDNAWKEVWSSNSVDSKGNIAEGTELRFWRGGAVAAAPA PAQPAMEQPHQEVAGNMAQAPAEEIPAPPMPEDPMAQQQAQMDIPPPPMEPAGDMAPPPPPPDMAQDMAPPPPPPVEAIN PPAPQVAEEAPTGMDNDTTMALAVVGLAAAGLAVLIVMRKKRKQKELEQQAMDNTHVGT >Mature_458_residues ASIKDEYMMKKLVILLACLGLAFQVTSCTSKDSQADAEVASDFDSADLEKLEGDDALEIAGDDSLASDQLPEDALGETTT TTETTTTTAETTLGDDQATTEQTDVATTTETLPADPFAEAPAADVPAPTTTVAETTTATDTSSNSVFESSTVTESSTTVV DSSSEAPKKASAPLQKVATTPWKAGGTWFNTVYFARPGDTLKGISQMIYGADKRKELKKGNPTFHSRDVRAGDKVYYNSP NRPDDSARMITYYEDNGIAPETYVAKSGDNIRTVSKNLLGYDNAWKEVWSSNSVDSKGNIAEGTELRFWRGGAVAAAPAP AQPAMEQPHQEVAGNMAQAPAEEIPAPPMPEDPMAQQQAQMDIPPPPMEPAGDMAPPPPPPDMAQDMAPPPPPPVEAINP PAPQVAEEAPTGMDNDTTMALAVVGLAAAGLAVLIVMRKKRKQKELEQQAMDNTHVGT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48621; Mature: 48490
Theoretical pI: Translated: 4.05; Mature: 4.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASIKDEYMMKKLVILLACLGLAFQVTSCTSKDSQADAEVASDFDSADLEKLEGDDALEI CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCCCEEE AGDDSLASDQLPEDALGETTTTTETTTTTAETTLGDDQATTEQTDVATTTETLPADPFAE CCCCCCCCCCCCHHHCCCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC APAADVPAPTTTVAETTTATDTSSNSVFESSTVTESSTTVVDSSSEAPKKASAPLQKVAT CCCCCCCCCCCHHCCCCCCCCCCCCCEECCCCCCCCCCEEEECCCCCCCHHHCCHHHHHC TPWKAGGTWFNTVYFARPGDTLKGISQMIYGADKRKELKKGNPTFHSRDVRAGDKVYYNS CCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCEEEECC PNRPDDSARMITYYEDNGIAPETYVAKSGDNIRTVSKNLLGYDNAWKEVWSSNSVDSKGN CCCCCCCCEEEEEECCCCCCCCCEEECCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCC IAEGTELRFWRGGAVAAAPAPAQPAMEQPHQEVAGNMAQAPAEEIPAPPMPEDPMAQQQA CCCCCEEEEECCCEEECCCCCCCHHHHCCHHHHHCHHHHCCHHHCCCCCCCCCHHHHHHH QMDIPPPPMEPAGDMAPPPPPPDMAQDMAPPPPPPVEAINPPAPQVAEEAPTGMDNDTTM CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHH ALAVVGLAAAGLAVLIVMRKKRKQKELEQQAMDNTHVGT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure ASIKDEYMMKKLVILLACLGLAFQVTSCTSKDSQADAEVASDFDSADLEKLEGDDALEI CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCCCEEE AGDDSLASDQLPEDALGETTTTTETTTTTAETTLGDDQATTEQTDVATTTETLPADPFAE CCCCCCCCCCCCHHHCCCCCCCCCCEECCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC APAADVPAPTTTVAETTTATDTSSNSVFESSTVTESSTTVVDSSSEAPKKASAPLQKVAT CCCCCCCCCCCHHCCCCCCCCCCCCCEECCCCCCCCCCEEEECCCCCCCHHHCCHHHHHC TPWKAGGTWFNTVYFARPGDTLKGISQMIYGADKRKELKKGNPTFHSRDVRAGDKVYYNS CCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCEEEECC PNRPDDSARMITYYEDNGIAPETYVAKSGDNIRTVSKNLLGYDNAWKEVWSSNSVDSKGN CCCCCCCCEEEEEECCCCCCCCCEEECCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCC IAEGTELRFWRGGAVAAAPAPAQPAMEQPHQEVAGNMAQAPAEEIPAPPMPEDPMAQQQA CCCCCEEEEECCCEEECCCCCCCHHHHCCHHHHHCHHHHCCHHHCCCCCCCCCHHHHHHH QMDIPPPPMEPAGDMAPPPPPPDMAQDMAPPPPPPVEAINPPAPQVAEEAPTGMDNDTTM CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHH ALAVVGLAAAGLAVLIVMRKKRKQKELEQQAMDNTHVGT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA