| Definition | Bdellovibrio bacteriovorus HD100, complete genome. |
|---|---|
| Accession | NC_005363 |
| Length | 3,782,950 |
Click here to switch to the map view.
The map label for this gene is 42521709
Identifier: 42521709
GI number: 42521709
Start: 56811
End: 57236
Strand: Direct
Name: 42521709
Synonym: Bd0062
Alternate gene names: NA
Gene position: 56811-57236 (Clockwise)
Preceding gene: 42521708
Following gene: 42521710
Centisome position: 1.5
GC content: 47.42
Gene sequence:
>426_bases ATGTTCGCAGGACTGTCCCTGGTCCTGTCTCCGCAGGCTTTTGCGGCCAAGGAATTTTCAAAAAAGAAAGTCACTCTGGG CTCCAAGACTTTTGTCGTGGAGATCGCTGAGACACCGGACCAGCACGAGCGCGGCCTGATGTTCCGCTCGCAGATGGGTG AAGACGAAGGAATGCTCTTTATATTCAAGAACGAGGAAACTCGATTCTTCTGGATGAAAAATACATTAATAGATCTGTCC ATCGGGTACTTCGACAAAAGTCTGAAGTTGATTGATGTGAAGGAAATGAAGTCCGGAAGAGGTGTGCCGGATTCGGCCCT GCCTTCTTATGCCAGTGCACAACCCGCAAAGTATGCGCTTGAAATGAATAAAGGCTGGTTCGATAAAAATAAAATCAAGA TCGGCTCTAAGCTCAAGATCCACTAG
Upstream 100 bases:
>100_bases GCAGTGGTGGAAGCTTTGAAACTGGAAGGCATGGTCGTCACGACCAAAGGGGTTCGTTATGGGGTTGCGCTGGAAATGCT CCACGTTCGCTAAATTTGTG
Downstream 100 bases:
>100_bases ATCAAAAGTCCAGTGATTTTCTTAGTGTTTGCATGACTTCGATCTTGTGCTTAGATTGTTAATAACGCTTAACTGAAACA GTATGTTTCGTGGCATCAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 141; Mature: 141
Protein sequence:
>141_residues MFAGLSLVLSPQAFAAKEFSKKKVTLGSKTFVVEIAETPDQHERGLMFRSQMGEDEGMLFIFKNEETRFFWMKNTLIDLS IGYFDKSLKLIDVKEMKSGRGVPDSALPSYASAQPAKYALEMNKGWFDKNKIKIGSKLKIH
Sequences:
>Translated_141_residues MFAGLSLVLSPQAFAAKEFSKKKVTLGSKTFVVEIAETPDQHERGLMFRSQMGEDEGMLFIFKNEETRFFWMKNTLIDLS IGYFDKSLKLIDVKEMKSGRGVPDSALPSYASAQPAKYALEMNKGWFDKNKIKIGSKLKIH >Mature_141_residues MFAGLSLVLSPQAFAAKEFSKKKVTLGSKTFVVEIAETPDQHERGLMFRSQMGEDEGMLFIFKNEETRFFWMKNTLIDLS IGYFDKSLKLIDVKEMKSGRGVPDSALPSYASAQPAKYALEMNKGWFDKNKIKIGSKLKIH
Specific function: Unknown
COG id: COG1430
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15978; Mature: 15978
Theoretical pI: Translated: 10.03; Mature: 10.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 5.0 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFAGLSLVLSPQAFAAKEFSKKKVTLGSKTFVVEIAETPDQHERGLMFRSQMGEDEGMLF CCCCCEEEECCCHHHHHHCCCCEEEECCEEEEEEECCCCCCCCCCEEEHHHCCCCCCEEE IFKNEETRFFWMKNTLIDLSIGYFDKSLKLIDVKEMKSGRGVPDSALPSYASAQPAKYAL EEECCCCEEEEEECEEEEEEECCCCCCEEEEEEEHHHCCCCCCCCCCCCCCCCCCCEEEE EMNKGWFDKNKIKIGSKLKIH EECCCCCCCCEEEECCEEEEC >Mature Secondary Structure MFAGLSLVLSPQAFAAKEFSKKKVTLGSKTFVVEIAETPDQHERGLMFRSQMGEDEGMLF CCCCCEEEECCCHHHHHHCCCCEEEECCEEEEEEECCCCCCCCCCEEEHHHCCCCCCEEE IFKNEETRFFWMKNTLIDLSIGYFDKSLKLIDVKEMKSGRGVPDSALPSYASAQPAKYAL EEECCCCEEEEEECEEEEEEECCCCCCEEEEEEEHHHCCCCCCCCCCCCCCCCCCCEEEE EMNKGWFDKNKIKIGSKLKIH EECCCCCCCCEEEECCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA