| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
Click here to switch to the map view.
The map label for this gene is ppdK
Identifier: 41408762
GI number: 41408762
Start: 3001086
End: 3002768
Strand: Direct
Name: ppdK
Synonym: MAP2664
Alternate gene names: 41408762
Gene position: 3001086-3002768 (Clockwise)
Preceding gene: 41408759
Following gene: 41408763
Centisome position: 62.14
GC content: 72.96
Gene sequence:
>1683_bases TTGCCCGAATCAGCAGCGACACCACGAAGGGGGTGCACCACGGCTCGCACCGCACCAGGTAGCGGCGCCCACCGCAACGC GTCACGCGACCGGGACGCCGCGCCGACCGAGCAGTCCGTGGTGTTGCTGGACGGCACATCGAGCCACCCCCGCGAGCTGC TTGGCAACAAGGGCCACGGCATCGAGGTGATGCGCCGCCACCACCTGCCGGTGCCGCCCGCGTTCTGCCTCACCACCGCG GTGGGCCTGCGGTATCTGGCCGACCCCGCGGCGACGATGGACGCCGTCTGGGACGACGTGCTGGACCGGATCGGCTGGCT GCAGGCGCAAACCTCGCGCACGTTCGGGCGGGGCCCGCACCCGCTGCTGGTCAGCGTGCGCTCGGGGGCCACCCAGTCGA TGCCCGGGATGATGGACACCCTGTTGAACCTCGGCATCAACGACTCCGTGGAGCAGGCGCTGGCCGCCGAGCACGGGCCG GCGTTCGCCCGCGACACCCACCGGCGGTTCCGCGAGATGTACCGGCGCATCGTGGGTGTCGAGCGGCCGGTGCCGTCCGA CCCGTACACGCAGTTGCGCGCCGGCATCGAGGCGGTGTTCGCGTCGTGGAACTCCCCGCGCGCCCGCGCCTACCGCGCCC ATTACGGTTTCGCCGACCGGCACGGCACCGCCGTCGTCGTGCAGGCCATGGTGTTCGGCAATCACGGCCCCAATTCCGGT GCGGGAGCGTTCTTTTCGCGCAACCCGATCACCGGGGACGACGAGCCGTTCGGCGAGTGGCTGCCCGGGGGCCAGGGCGA CGACGTGGTGTCGGGATCGGTCGACGTGGAACCGATCGCCGCGCTGCGCGACGAGCAGCCGGCCGTCTACGACCAGCTGA TGGCCGCCGCCCGGACGCTGGAGCGGTTGGACCGTGACGTCCAGGAGATCGAGTTCACCGTCGAGGACGGCGCCCTGTGG TTGCTGCAGACCCGGGCGGCCGAACGCTCGGCGCAGGCGGCGGTGCGCTCGGCGCTGCAGCTGCGACGCGAGGGGCTGAT CGACGACGCCGAGACGCTGCGGCGGGTCACCCCGGCGCACGTGCGGTCGCTGCTGATGCCCGCCCTGCAACCCGAAATAC GTTTGGCGGCACCACTTCTGGCCAAGGGCCTACCTGCCTGCCCCGGCGTGGTATCCGGCACGGCCTACGCCGACGTCGAC GAGGCGCTGCACGCCGCCGAGCGGGGCGAACCGGTGATCCTGGTGCGCGACCACACCCGGCCCGAAGACGTGTCGGGCAT GCTGGCCGCGCGGGGCATCGTCACCGAGGTGGGCGGCGCGGCCAGCCATGCGGCGGTGGTCAGCCGGGAACTGGGCCGGG TGGCCGTGGTGGGTTGCGGCGCCGGGGTGGCCGCGATGCTGGCGGGCCGGCGGATCACCGTCGACGGCGCCGAAGGCGAA GTGCGCGAAGGCGAATTGTCCCTGTCCGCATGGTCCGAGAACGATACCCCGGAGCTGCGGGAGCTGGCCGAGATCGCGCG GCTGATCAGCCCGCTGCGCGCCCATTCCGGCGGCGACCATCCGCGGCTGGACGACGACTCCGAGAGCGCCGTGCGCGCGG CCCTGGCCGCCGGGCAGACCGACGTGGTCTCGCCCACCCCGCTGCTGGTCATGCTGACCGCGCTGCGCCAGGGCGCGCCG TGA
Upstream 100 bases:
>100_bases TAGGTGCAAACCTAGATCATCGGCCGCCGGGGAGGACAGGACCGCCGCGCGGCTGAGTCCACCCGCCGGCCCGTGTGGGA ACATAGCGGGCGTTCCGGGG
Downstream 100 bases:
>100_bases CCGAACTGGCTGTGCTGCAAGCGATTCGGCTCAAGGGCCGGGTCAGCCGAGCCGACCTGGCCGCCACCCTGGGCACGGAT CCCGACGAAATCGCCGGCAC
Product: pyruvate phosphate dikinase
Products: NA
Alternate protein names: Pyruvate, orthophosphate dikinase [H]
Number of amino acids: Translated: 560; Mature: 559
Protein sequence:
>560_residues MPESAATPRRGCTTARTAPGSGAHRNASRDRDAAPTEQSVVLLDGTSSHPRELLGNKGHGIEVMRRHHLPVPPAFCLTTA VGLRYLADPAATMDAVWDDVLDRIGWLQAQTSRTFGRGPHPLLVSVRSGATQSMPGMMDTLLNLGINDSVEQALAAEHGP AFARDTHRRFREMYRRIVGVERPVPSDPYTQLRAGIEAVFASWNSPRARAYRAHYGFADRHGTAVVVQAMVFGNHGPNSG AGAFFSRNPITGDDEPFGEWLPGGQGDDVVSGSVDVEPIAALRDEQPAVYDQLMAAARTLERLDRDVQEIEFTVEDGALW LLQTRAAERSAQAAVRSALQLRREGLIDDAETLRRVTPAHVRSLLMPALQPEIRLAAPLLAKGLPACPGVVSGTAYADVD EALHAAERGEPVILVRDHTRPEDVSGMLAARGIVTEVGGAASHAAVVSRELGRVAVVGCGAGVAAMLAGRRITVDGAEGE VREGELSLSAWSENDTPELRELAEIARLISPLRAHSGGDHPRLDDDSESAVRAALAAGQTDVVSPTPLLVMLTALRQGAP
Sequences:
>Translated_560_residues MPESAATPRRGCTTARTAPGSGAHRNASRDRDAAPTEQSVVLLDGTSSHPRELLGNKGHGIEVMRRHHLPVPPAFCLTTA VGLRYLADPAATMDAVWDDVLDRIGWLQAQTSRTFGRGPHPLLVSVRSGATQSMPGMMDTLLNLGINDSVEQALAAEHGP AFARDTHRRFREMYRRIVGVERPVPSDPYTQLRAGIEAVFASWNSPRARAYRAHYGFADRHGTAVVVQAMVFGNHGPNSG AGAFFSRNPITGDDEPFGEWLPGGQGDDVVSGSVDVEPIAALRDEQPAVYDQLMAAARTLERLDRDVQEIEFTVEDGALW LLQTRAAERSAQAAVRSALQLRREGLIDDAETLRRVTPAHVRSLLMPALQPEIRLAAPLLAKGLPACPGVVSGTAYADVD EALHAAERGEPVILVRDHTRPEDVSGMLAARGIVTEVGGAASHAAVVSRELGRVAVVGCGAGVAAMLAGRRITVDGAEGE VREGELSLSAWSENDTPELRELAEIARLISPLRAHSGGDHPRLDDDSESAVRAALAAGQTDVVSPTPLLVMLTALRQGAP >Mature_559_residues PESAATPRRGCTTARTAPGSGAHRNASRDRDAAPTEQSVVLLDGTSSHPRELLGNKGHGIEVMRRHHLPVPPAFCLTTAV GLRYLADPAATMDAVWDDVLDRIGWLQAQTSRTFGRGPHPLLVSVRSGATQSMPGMMDTLLNLGINDSVEQALAAEHGPA FARDTHRRFREMYRRIVGVERPVPSDPYTQLRAGIEAVFASWNSPRARAYRAHYGFADRHGTAVVVQAMVFGNHGPNSGA GAFFSRNPITGDDEPFGEWLPGGQGDDVVSGSVDVEPIAALRDEQPAVYDQLMAAARTLERLDRDVQEIEFTVEDGALWL LQTRAAERSAQAAVRSALQLRREGLIDDAETLRRVTPAHVRSLLMPALQPEIRLAAPLLAKGLPACPGVVSGTAYADVDE ALHAAERGEPVILVRDHTRPEDVSGMLAARGIVTEVGGAASHAAVVSRELGRVAVVGCGAGVAAMLAGRRITVDGAEGEV REGELSLSAWSENDTPELRELAEIARLISPLRAHSGGDHPRLDDDSESAVRAALAAGQTDVVSPTPLLVMLTALRQGAP
Specific function: Catalyzes the reversible phosphorylation of pyruvate and phosphate. In E.histolytica and C.symbiosus, PPDK functions in the direction of ATP synthesis [H]
COG id: COG0574
COG function: function code G; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEP-utilizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI1787994, Length=305, Percent_Identity=28.1967213114754, Blast_Score=67, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR008279 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR002192 - InterPro: IPR010121 - InterPro: IPR015813 [H]
Pfam domain/function: PF00391 PEP-utilizers; PF02896 PEP-utilizers_C; PF01326 PPDK_N [H]
EC number: =2.7.9.1 [H]
Molecular weight: Translated: 59739; Mature: 59608
Theoretical pI: Translated: 5.84; Mature: 5.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPESAATPRRGCTTARTAPGSGAHRNASRDRDAAPTEQSVVLLDGTSSHPRELLGNKGHG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHCCCCCC IEVMRRHHLPVPPAFCLTTAVGLRYLADPAATMDAVWDDVLDRIGWLQAQTSRTFGRGPH HHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC PLLVSVRSGATQSMPGMMDTLLNLGINDSVEQALAAEHGPAFARDTHRRFREMYRRIVGV CEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC ERPVPSDPYTQLRAGIEAVFASWNSPRARAYRAHYGFADRHGTAVVVQAMVFGNHGPNSG CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCC AGAFFSRNPITGDDEPFGEWLPGGQGDDVVSGSVDVEPIAALRDEQPAVYDQLMAAARTL CCCCEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHH ERLDRDVQEIEFTVEDGALWLLQTRAAERSAQAAVRSALQLRREGLIDDAETLRRVTPAH HHHHHHHHHHEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHH VRSLLMPALQPEIRLAAPLLAKGLPACPGVVSGTAYADVDEALHAAERGEPVILVRDHTR HHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC PEDVSGMLAARGIVTEVGGAASHAAVVSRELGRVAVVGCGAGVAAMLAGRRITVDGAEGE CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHCCCEEEEECCCCC VREGELSLSAWSENDTPELRELAEIARLISPLRAHSGGDHPRLDDDSESAVRAALAAGQT CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC DVVSPTPLLVMLTALRQGAP CCCCCCHHHHHHHHHHCCCC >Mature Secondary Structure PESAATPRRGCTTARTAPGSGAHRNASRDRDAAPTEQSVVLLDGTSSHPRELLGNKGHG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHCCCCCC IEVMRRHHLPVPPAFCLTTAVGLRYLADPAATMDAVWDDVLDRIGWLQAQTSRTFGRGPH HHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC PLLVSVRSGATQSMPGMMDTLLNLGINDSVEQALAAEHGPAFARDTHRRFREMYRRIVGV CEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC ERPVPSDPYTQLRAGIEAVFASWNSPRARAYRAHYGFADRHGTAVVVQAMVFGNHGPNSG CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCC AGAFFSRNPITGDDEPFGEWLPGGQGDDVVSGSVDVEPIAALRDEQPAVYDQLMAAARTL CCCCEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHH ERLDRDVQEIEFTVEDGALWLLQTRAAERSAQAAVRSALQLRREGLIDDAETLRRVTPAH HHHHHHHHHHEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHH VRSLLMPALQPEIRLAAPLLAKGLPACPGVVSGTAYADVDEALHAAERGEPVILVRDHTR HHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC PEDVSGMLAARGIVTEVGGAASHAAVVSRELGRVAVVGCGAGVAAMLAGRRITVDGAEGE CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHCCCEEEEECCCCC VREGELSLSAWSENDTPELRELAEIARLISPLRAHSGGDHPRLDDDSESAVRAALAAGQT CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC DVVSPTPLLVMLTALRQGAP CCCCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2176881; 6257292; 11695893; 11468288; 8610096; 9753432 [H]