| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is djlA
Identifier: 37678666
GI number: 37678666
Start: 467230
End: 468093
Strand: Direct
Name: djlA
Synonym: VV0482
Alternate gene names: 37678666
Gene position: 467230-468093 (Clockwise)
Preceding gene: 37678659
Following gene: 37678672
Centisome position: 13.93
GC content: 46.76
Gene sequence:
>864_bases ATGCAGATTTTTGGCAAAATTCTTGGTGCCTTTTTTGGTTTTTTGTTCGGCGGGGTGTTTGGGGCACTGTTCGGTTTATT TATTGGTCACCAGTTCGACAAAGCACGACGCTTGAGTCAAGCGGGCTTTAAAACCGCAGGTTTTGGCCAAGGGCCAAGTC AAGCTCAGCGACAAGAGGAGTTTTTTAAGTCCGCTTTTGCTGTTATGGGGCATGTGGCTAAAGCAAAAGGCCAAGTCACC AAGGAAGAGATCCAACTTGCCAGTGCAATGATGGATCGAATGAGCTTGCATGGCGAACAGCGCAGAGCAGCGCAAGATGC GTTTCGTGAAGGTAAAGAACGTGATTTCCCTCTGGAACAACTCTTAGAGAGAGTCAAAATTGCCACTAGTGGCCGTTTTG ATTTATTGCAGTTCTTTTTGGAATTACAGATCTCTGCGGCTTTTGCCGATGGCGATGTGCATCCAAGTGAAAGAAACGTA TTGCACAAGATTGCGCGAGGTTTAGGATTTTCGTCTGAACAGCTCGAGCGTCGTTTGCAGATGCAAGAAGCGGCATTTCG TTTCCAACGTCAGGGCGGATTTGGGGGACAACAGCATCAATCTCATCACTCATCTTCTCACGGTGGCTGGCAGCAAGCGT CGCAAACTGACCGTCTCGCGGATGCCTATAAGATCTTGGGCATTGACGCCAATGCCGATGGCAAAGAGGTGAAGCGCGCT TATCGTAAGTTAATGAATGAGCACCACCCTGATAAATTGATGGCAAAAGGTCTACCGCCAGAAATGATGAATATGGCGAA AGAAAAATCGCAAGAAATTCAAAGTGCTTACGATCTTATTAAGAAAGAAAAAGGCTTCAAGTAG
Upstream 100 bases:
>100_bases CATGGTGAAAAAATGATTGCCTTATCATAAAGGAAATCCGTGCTTCCAGCACTATATGACCGTCAATGACGGGAAAAATT CATAGATAGAGAACTCACAA
Downstream 100 bases:
>100_bases CCAACAAAAAAACAGGACGATGAGATCGCCTGTTTTTTCTCATTCATGTAAAAACAGAAAGGCCGTATTTCGGCCTTTCT GTGTTTATTGGGCTTGGTTG
Product: Dna-J like membrane chaperone protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 287; Mature: 287
Protein sequence:
>287_residues MQIFGKILGAFFGFLFGGVFGALFGLFIGHQFDKARRLSQAGFKTAGFGQGPSQAQRQEEFFKSAFAVMGHVAKAKGQVT KEEIQLASAMMDRMSLHGEQRRAAQDAFREGKERDFPLEQLLERVKIATSGRFDLLQFFLELQISAAFADGDVHPSERNV LHKIARGLGFSSEQLERRLQMQEAAFRFQRQGGFGGQQHQSHHSSSHGGWQQASQTDRLADAYKILGIDANADGKEVKRA YRKLMNEHHPDKLMAKGLPPEMMNMAKEKSQEIQSAYDLIKKEKGFK
Sequences:
>Translated_287_residues MQIFGKILGAFFGFLFGGVFGALFGLFIGHQFDKARRLSQAGFKTAGFGQGPSQAQRQEEFFKSAFAVMGHVAKAKGQVT KEEIQLASAMMDRMSLHGEQRRAAQDAFREGKERDFPLEQLLERVKIATSGRFDLLQFFLELQISAAFADGDVHPSERNV LHKIARGLGFSSEQLERRLQMQEAAFRFQRQGGFGGQQHQSHHSSSHGGWQQASQTDRLADAYKILGIDANADGKEVKRA YRKLMNEHHPDKLMAKGLPPEMMNMAKEKSQEIQSAYDLIKKEKGFK >Mature_287_residues MQIFGKILGAFFGFLFGGVFGALFGLFIGHQFDKARRLSQAGFKTAGFGQGPSQAQRQEEFFKSAFAVMGHVAKAKGQVT KEEIQLASAMMDRMSLHGEQRRAAQDAFREGKERDFPLEQLLERVKIATSGRFDLLQFFLELQISAAFADGDVHPSERNV LHKIARGLGFSSEQLERRLQMQEAAFRFQRQGGFGGQQHQSHHSSSHGGWQQASQTDRLADAYKILGIDANADGKEVKRA YRKLMNEHHPDKLMAKGLPPEMMNMAKEKSQEIQSAYDLIKKEKGFK
Specific function: Regulatory dnaK co-chaperone. Direct interaction between dnaK and djlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the rcsB/rcsC phosphotransfer sig
COG id: COG1076
COG function: function code O; DnaJ-domain-containing proteins 1
Gene ontology:
Cell location: Cell inner membrane; Single-pass type III membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 J domain [H]
Homologues:
Organism=Escherichia coli, GI1786241, Length=288, Percent_Identity=48.9583333333333, Blast_Score=267, Evalue=6e-73,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001623 - InterPro: IPR007791 - InterPro: IPR015609 - InterPro: IPR003095 [H]
Pfam domain/function: PF00226 DnaJ; PF05099 TerB [H]
EC number: NA
Molecular weight: Translated: 32243; Mature: 32243
Theoretical pI: Translated: 10.28; Mature: 10.28
Prosite motif: PS50076 DNAJ_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQIFGKILGAFFGFLFGGVFGALFGLFIGHQFDKARRLSQAGFKTAGFGQGPSQAQRQEE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH FFKSAFAVMGHVAKAKGQVTKEEIQLASAMMDRMSLHGEQRRAAQDAFREGKERDFPLEQ HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHH LLERVKIATSGRFDLLQFFLELQISAAFADGDVHPSERNVLHKIARGLGFSSEQLERRLQ HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH MQEAAFRFQRQGGFGGQQHQSHHSSSHGGWQQASQTDRLADAYKILGIDANADGKEVKRA HHHHHHHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH YRKLMNEHHPDKLMAKGLPPEMMNMAKEKSQEIQSAYDLIKKEKGFK HHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MQIFGKILGAFFGFLFGGVFGALFGLFIGHQFDKARRLSQAGFKTAGFGQGPSQAQRQEE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH FFKSAFAVMGHVAKAKGQVTKEEIQLASAMMDRMSLHGEQRRAAQDAFREGKERDFPLEQ HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHH LLERVKIATSGRFDLLQFFLELQISAAFADGDVHPSERNVLHKIARGLGFSSEQLERRLQ HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH MQEAAFRFQRQGGFGGQQHQSHHSSSHGGWQQASQTDRLADAYKILGIDANADGKEVKRA HHHHHHHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH YRKLMNEHHPDKLMAKGLPPEMMNMAKEKSQEIQSAYDLIKKEKGFK HHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA