| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is xseA [H]
Identifier: 34499019
GI number: 34499019
Start: 3870572
End: 3871936
Strand: Direct
Name: xseA [H]
Synonym: CV_3564
Alternate gene names: 34499019
Gene position: 3870572-3871936 (Clockwise)
Preceding gene: 34499017
Following gene: 34499021
Centisome position: 81.47
GC content: 69.52
Gene sequence:
>1365_bases TTGACAAGACACCATTTCCCTGATCAAAGCCAGGACGTGATCAGCGTCTCCTCGCTCAACCGCATGGCGCGGGACCTGCT GGAAGCAGGCATTCCGCCGGTGTGGATCGGCGGGGAAATCTCCAATCTGACGCTGGCCGCCTCCGGCCACGCCTACTTCT CGCTGAAGGACGGCGGCGCCCAGATCCGCTGCGTGATGTTCCGCCACAAGCTGTCCCTGCTGCCGTTCCGCCCGCAGGAA GGCATGCAGGTGGAGCTGCGCGGCCAAGTGACGCTGTACGAGGCCAGGGGCGAATTCCAGATCAATGTCGGCGAGATGCG CGCCGCCGGCCTCGGCAGGCTGTACGAGGCCTTCGAGCGGCTGAAGGCCCGGCTGCAGGCGGAGGGCCTGTTCGACAACG CGCGCAAGCGCGAGCTGCCCGCCCATCCGGCGGCCATCGGCATCGTCACTTCGCCCGCCGCCGCCGCGCTACGCGACGTG GTCAGCACGCTGCGCCGCCGCATGCCCGGCATCCCGCTGATTCTCTACCCGACCCAGGTGCAGGGAGAAGGCTCGGCCAG GCAGATCGCCGACGCCCTCCGCCTGGCCGGCGAGCGGCGCGAGGTCGACGTGCTGATCGTCTGCCGTGGCGGCGGCAGCA TCGAAGACCTGTGGTCGTTCAACGAGGAAATCGTCGCTCGCGCCGTCGCCGCCAGCCCCATCCCCACCGTCAGCGGCGTC GGCCACGAAACCGATTTCACCATCTGCGACTTCGTCGCCGACCGCCGCGCGCCGACGCCGACCGCGGCGGCGGAACTGGT ATCGCCCAACCGCGAGCACCTGGCCATCCAGCTGGAACAGACCAAGCGCGCGCTGGAGCGCGCCTTGAGCCGGCTATTGA CGGACAAGACGCAGCAGCTGGACTTCCTCGGCCGCCGCCTGACGCATCCCGGCGCGCGCTTGCAGGTGCAGCGCGAACGG CTGGACGCGTTGTCGAGCGCGCTTGGGCAGCGCGTCCAGGCTGCCTTCGAGCAAGGCCGCTGGCGGCTGCAACTGGCCGG CACCCGCCTCTCCCGCCACCAACCCGATCTAGACGTGGGCAAGCAGGCGCTGCGGCAACGGCAGGCCGCGCTGCTGCGCG CCCGCGACCGTCTGCTGGAGCGCCGCGCCCAGCAATTGGCGCAACTGGCCGCCACGCTGACCGCGCTCAACCCGGAAGCC GTGCTGGCGCGTGGCTACGCTATCGTGCAGAAGCAGGATGGCCGCGCGGTCAAGAACCCGGCGGAATTGGCTGACCGCGA AAAAGTGACGCTGCGGCTGGCCGAAGGCAGCGCCGAGGCGCGCATCGAGCACAATCAGGGCGCCCAGGGCCAGTTGCCGT TTTAG
Upstream 100 bases:
>100_bases ATTGATTTGATTGCATTTTGAATCAGATATCAAACACTACGCAGGTGGGAGGCCGCCTGCGCCCCTTGAATATTTACTCC AGTGAAGCGCTGTGGATCAC
Downstream 100 bases:
>100_bases CGCTGCGCAAAACCCCTGATGCTGCGTTGCGCCGACGCGTCGTACGATTTACACCGCCGGCGCGCCTTGCCTCAGGCGCT TCACGGAGATCCGTTAGCGG
Product: exodeoxyribonuclease VII large subunit
Products: NA
Alternate protein names: Exodeoxyribonuclease VII large subunit; Exonuclease VII large subunit [H]
Number of amino acids: Translated: 454; Mature: 453
Protein sequence:
>454_residues MTRHHFPDQSQDVISVSSLNRMARDLLEAGIPPVWIGGEISNLTLAASGHAYFSLKDGGAQIRCVMFRHKLSLLPFRPQE GMQVELRGQVTLYEARGEFQINVGEMRAAGLGRLYEAFERLKARLQAEGLFDNARKRELPAHPAAIGIVTSPAAAALRDV VSTLRRRMPGIPLILYPTQVQGEGSARQIADALRLAGERREVDVLIVCRGGGSIEDLWSFNEEIVARAVAASPIPTVSGV GHETDFTICDFVADRRAPTPTAAAELVSPNREHLAIQLEQTKRALERALSRLLTDKTQQLDFLGRRLTHPGARLQVQRER LDALSSALGQRVQAAFEQGRWRLQLAGTRLSRHQPDLDVGKQALRQRQAALLRARDRLLERRAQQLAQLAATLTALNPEA VLARGYAIVQKQDGRAVKNPAELADREKVTLRLAEGSAEARIEHNQGAQGQLPF
Sequences:
>Translated_454_residues MTRHHFPDQSQDVISVSSLNRMARDLLEAGIPPVWIGGEISNLTLAASGHAYFSLKDGGAQIRCVMFRHKLSLLPFRPQE GMQVELRGQVTLYEARGEFQINVGEMRAAGLGRLYEAFERLKARLQAEGLFDNARKRELPAHPAAIGIVTSPAAAALRDV VSTLRRRMPGIPLILYPTQVQGEGSARQIADALRLAGERREVDVLIVCRGGGSIEDLWSFNEEIVARAVAASPIPTVSGV GHETDFTICDFVADRRAPTPTAAAELVSPNREHLAIQLEQTKRALERALSRLLTDKTQQLDFLGRRLTHPGARLQVQRER LDALSSALGQRVQAAFEQGRWRLQLAGTRLSRHQPDLDVGKQALRQRQAALLRARDRLLERRAQQLAQLAATLTALNPEA VLARGYAIVQKQDGRAVKNPAELADREKVTLRLAEGSAEARIEHNQGAQGQLPF >Mature_453_residues TRHHFPDQSQDVISVSSLNRMARDLLEAGIPPVWIGGEISNLTLAASGHAYFSLKDGGAQIRCVMFRHKLSLLPFRPQEG MQVELRGQVTLYEARGEFQINVGEMRAAGLGRLYEAFERLKARLQAEGLFDNARKRELPAHPAAIGIVTSPAAAALRDVV STLRRRMPGIPLILYPTQVQGEGSARQIADALRLAGERREVDVLIVCRGGGSIEDLWSFNEEIVARAVAASPIPTVSGVG HETDFTICDFVADRRAPTPTAAAELVSPNREHLAIQLEQTKRALERALSRLLTDKTQQLDFLGRRLTHPGARLQVQRERL DALSSALGQRVQAAFEQGRWRLQLAGTRLSRHQPDLDVGKQALRQRQAALLRARDRLLERRAQQLAQLAATLTALNPEAV LARGYAIVQKQDGRAVKNPAELADREKVTLRLAEGSAEARIEHNQGAQGQLPF
Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]
COG id: COG1570
COG function: function code L; Exonuclease VII, large subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xseA family [H]
Homologues:
Organism=Escherichia coli, GI1788856, Length=448, Percent_Identity=43.9732142857143, Blast_Score=352, Evalue=3e-98,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003753 - InterPro: IPR020579 - InterPro: IPR004365 [H]
Pfam domain/function: PF02601 Exonuc_VII_L; PF01336 tRNA_anti [H]
EC number: =3.1.11.6 [H]
Molecular weight: Translated: 50079; Mature: 49948
Theoretical pI: Translated: 10.46; Mature: 10.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRHHFPDQSQDVISVSSLNRMARDLLEAGIPPVWIGGEISNLTLAASGHAYFSLKDGGA CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEECCCEEEEEECCCC QIRCVMFRHKLSLLPFRPQEGMQVELRGQVTLYEARGEFQINVGEMRAAGLGRLYEAFER EEEEEEEEHHHHCCCCCCCCCCEEEEECCEEEEECCCCEEEEHHHHHHHHHHHHHHHHHH LKARLQAEGLFDNARKRELPAHPAAIGIVTSPAAAALRDVVSTLRRRMPGIPLILYPTQV HHHHHHHCCCHHCHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCCC QGEGSARQIADALRLAGERREVDVLIVCRGGGSIEDLWSFNEEIVARAVAASPIPTVSGV CCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHCCCHHHHHHHHHCCCCCCCCCC GHETDFTICDFVADRRAPTPTAAAELVSPNREHLAIQLEQTKRALERALSRLLTDKTQQL CCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCHHEEEEHHHHHHHHHHHHHHHHHHHHHHH DFLGRRLTHPGARLQVQRERLDALSSALGQRVQAAFEQGRWRLQLAGTRLSRHQPDLDVG HHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHCCCCCHHHH KQALRQRQAALLRARDRLLERRAQQLAQLAATLTALNPEAVLARGYAIVQKQDGRAVKNP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEEEECCCCCCCCH AELADREKVTLRLAEGSAEARIEHNQGAQGQLPF HHHCCCCEEEEEEECCCCCEEEECCCCCCCCCCC >Mature Secondary Structure TRHHFPDQSQDVISVSSLNRMARDLLEAGIPPVWIGGEISNLTLAASGHAYFSLKDGGA CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEECCCEEEEEECCCC QIRCVMFRHKLSLLPFRPQEGMQVELRGQVTLYEARGEFQINVGEMRAAGLGRLYEAFER EEEEEEEEHHHHCCCCCCCCCCEEEEECCEEEEECCCCEEEEHHHHHHHHHHHHHHHHHH LKARLQAEGLFDNARKRELPAHPAAIGIVTSPAAAALRDVVSTLRRRMPGIPLILYPTQV HHHHHHHCCCHHCHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCCC QGEGSARQIADALRLAGERREVDVLIVCRGGGSIEDLWSFNEEIVARAVAASPIPTVSGV CCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHCCCHHHHHHHHHCCCCCCCCCC GHETDFTICDFVADRRAPTPTAAAELVSPNREHLAIQLEQTKRALERALSRLLTDKTQQL CCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCHHEEEEHHHHHHHHHHHHHHHHHHHHHHH DFLGRRLTHPGARLQVQRERLDALSSALGQRVQAAFEQGRWRLQLAGTRLSRHQPDLDVG HHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHCCCCCHHHH KQALRQRQAALLRARDRLLERRAQQLAQLAATLTALNPEAVLARGYAIVQKQDGRAVKNP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEEEECCCCCCCCH AELADREKVTLRLAEGSAEARIEHNQGAQGQLPF HHHCCCCEEEEEEECCCCCEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA