Definition Tropheryma whipplei TW08/27, complete genome.
Accession NC_004551
Length 925,938

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The map label for this gene is 28572780

Identifier: 28572780

GI number: 28572780

Start: 722670

End: 723827

Strand: Reverse

Name: 28572780

Synonym: TW634

Alternate gene names: NA

Gene position: 723827-722670 (Counterclockwise)

Preceding gene: 28572782

Following gene: 28572779

Centisome position: 78.17

GC content: 56.56

Gene sequence:

>1158_bases
ATGAAAAATCCTCTTGGTACCCGCGGTTCCCTTGCGGGGTTGTGTGCCACCGCCGCTATCGCGTCTGGTTTGGCTTTTAT
TGTGCCTGGTGCTTTCGCAGATTCTACACCCGCCCCGGGTGCCCCTGGCCAGCCTGGCCCCGCCAGAACGGTTGATGTTG
GTGGTGTTCTGGTTGTGTGCGGTCCGAATGGCCCGACTGTTTCCGGTCTTGTCGCTGCCGGCGGTTTCGGTGACGTGTGC
GGTCCTGTTCCTGCACCCACTGTTGCGCCCAATCCCAGCTCTGTTCCAACGCATTCCCCGCATACCATCCCACCTCTGCC
CGCTCCGGGTGATTATCAGGTTTCCCTATCGATTTCTGGCCCTAAGGGTGAGAAAGTCGACCTGAAGAATCTGAAGGTCG
GTGAGAAGATTACTTTGTCTGCGACTGTGACCCGTGATACACCCACTGTGCCTACTATTCCGACAGTTTTTCCAACACCC
ACAACCGGTGGCACAACCAGTGGCACAACCGGTGGTTCTTCTAGACCTACTTCCCCTTCTACCCAGGATCCCGCTCAGCC
CCTTCAGCCCTTACCTCTTCCAACAACTTCTTCCGCTTCCTGCGGTCCTACTGACCTTGTTGACCCCGAGGGTAACTGCG
TGCTGACCACCACTTCTCCTGCCACGTCTGCCGGTGCGGTCGGCTCGACGACTCAGTCTGCTACATCTACCCCCACGACA
ACCCCGGCTAATGCTCCGTCTATCTCTACCGGGCGGCTACCGCAGGCCCTTCCTCGTGGCGGTTTCGGTGGCGCGTTTGC
GCTCTCCGCGATTAAGGCTGAGCCCATTTCTGGGGGTACCGTTTCCTTCTTTATTGGCTCTGATAGTGTTGCAACTGTTT
CCCTTGACGAGGGTAAGGCGTCTGCTGTCGTCACTCTCAAGAAAGAGGGGACTTTTACAGTTTCGGCTCTTTATACTGAC
CCGCAGGGACTTCAGTCTAAGGCTGAGCAGTCTGTGACGGTTGTTCCAAGTACCGGTAGGCTTGCTTATACAGGTCTAGA
CCTTGGTTGGGGTATATTTGGCCTGGGTACTTTGGCTGTTGCTGTTGGTGCCGGCGCTTATGTGTTTGCTCGTCGCAGGA
ATAACTCTTCCTCCGATGGCGAAGGGGTTGTCCTTTAG

Upstream 100 bases:

>100_bases
GGGTTACTCTTCATCTTTGAGTTTTTCAGGTTTCTGTGTTACCATTCTTGTCTGCGGTGGTTGCCGCGTAGTTTTTCCGG
AGATTGGAGATATTCACGTC

Downstream 100 bases:

>100_bases
GCTCCTGTATTTTTCGACCGGGCTGCGGGGTTTCTCGTAGCCCGGTTTTTGTTTGTTGCAATGTTTGTTTTTCGTGATGG
ATCCTGTTTTTCTTTCGGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MKNPLGTRGSLAGLCATAAIASGLAFIVPGAFADSTPAPGAPGQPGPARTVDVGGVLVVCGPNGPTVSGLVAAGGFGDVC
GPVPAPTVAPNPSSVPTHSPHTIPPLPAPGDYQVSLSISGPKGEKVDLKNLKVGEKITLSATVTRDTPTVPTIPTVFPTP
TTGGTTSGTTGGSSRPTSPSTQDPAQPLQPLPLPTTSSASCGPTDLVDPEGNCVLTTTSPATSAGAVGSTTQSATSTPTT
TPANAPSISTGRLPQALPRGGFGGAFALSAIKAEPISGGTVSFFIGSDSVATVSLDEGKASAVVTLKKEGTFTVSALYTD
PQGLQSKAEQSVTVVPSTGRLAYTGLDLGWGIFGLGTLAVAVGAGAYVFARRRNNSSSDGEGVVL

Sequences:

>Translated_385_residues
MKNPLGTRGSLAGLCATAAIASGLAFIVPGAFADSTPAPGAPGQPGPARTVDVGGVLVVCGPNGPTVSGLVAAGGFGDVC
GPVPAPTVAPNPSSVPTHSPHTIPPLPAPGDYQVSLSISGPKGEKVDLKNLKVGEKITLSATVTRDTPTVPTIPTVFPTP
TTGGTTSGTTGGSSRPTSPSTQDPAQPLQPLPLPTTSSASCGPTDLVDPEGNCVLTTTSPATSAGAVGSTTQSATSTPTT
TPANAPSISTGRLPQALPRGGFGGAFALSAIKAEPISGGTVSFFIGSDSVATVSLDEGKASAVVTLKKEGTFTVSALYTD
PQGLQSKAEQSVTVVPSTGRLAYTGLDLGWGIFGLGTLAVAVGAGAYVFARRRNNSSSDGEGVVL
>Mature_385_residues
MKNPLGTRGSLAGLCATAAIASGLAFIVPGAFADSTPAPGAPGQPGPARTVDVGGVLVVCGPNGPTVSGLVAAGGFGDVC
GPVPAPTVAPNPSSVPTHSPHTIPPLPAPGDYQVSLSISGPKGEKVDLKNLKVGEKITLSATVTRDTPTVPTIPTVFPTP
TTGGTTSGTTGGSSRPTSPSTQDPAQPLQPLPLPTTSSASCGPTDLVDPEGNCVLTTTSPATSAGAVGSTTQSATSTPTT
TPANAPSISTGRLPQALPRGGFGGAFALSAIKAEPISGGTVSFFIGSDSVATVSLDEGKASAVVTLKKEGTFTVSALYTD
PQGLQSKAEQSVTVVPSTGRLAYTGLDLGWGIFGLGTLAVAVGAGAYVFARRRNNSSSDGEGVVL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37738; Mature: 37738

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNPLGTRGSLAGLCATAAIASGLAFIVPGAFADSTPAPGAPGQPGPARTVDVGGVLVVC
CCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCEEEEE
GPNGPTVSGLVAAGGFGDVCGPVPAPTVAPNPSSVPTHSPHTIPPLPAPGDYQVSLSISG
CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
PKGEKVDLKNLKVGEKITLSATVTRDTPTVPTIPTVFPTPTTGGTTSGTTGGSSRPTSPS
CCCCEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TQDPAQPLQPLPLPTTSSASCGPTDLVDPEGNCVLTTTSPATSAGAVGSTTQSATSTPTT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
TPANAPSISTGRLPQALPRGGFGGAFALSAIKAEPISGGTVSFFIGSDSVATVSLDEGKA
CCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCC
SAVVTLKKEGTFTVSALYTDPQGLQSKAEQSVTVVPSTGRLAYTGLDLGWGIFGLGTLAV
EEEEEEECCCCEEEEEEEECCHHHHHHHHCCEEEEECCCCEEEECCCCCCHHHHHHHHHH
AVGAGAYVFARRRNNSSSDGEGVVL
HHCCCEEEEEEECCCCCCCCCEEEC
>Mature Secondary Structure
MKNPLGTRGSLAGLCATAAIASGLAFIVPGAFADSTPAPGAPGQPGPARTVDVGGVLVVC
CCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCEEEEE
GPNGPTVSGLVAAGGFGDVCGPVPAPTVAPNPSSVPTHSPHTIPPLPAPGDYQVSLSISG
CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
PKGEKVDLKNLKVGEKITLSATVTRDTPTVPTIPTVFPTPTTGGTTSGTTGGSSRPTSPS
CCCCEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TQDPAQPLQPLPLPTTSSASCGPTDLVDPEGNCVLTTTSPATSAGAVGSTTQSATSTPTT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
TPANAPSISTGRLPQALPRGGFGGAFALSAIKAEPISGGTVSFFIGSDSVATVSLDEGKA
CCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCCCC
SAVVTLKKEGTFTVSALYTDPQGLQSKAEQSVTVVPSTGRLAYTGLDLGWGIFGLGTLAV
EEEEEEECCCCEEEEEEEECCHHHHHHHHCCEEEEECCCCEEEECCCCCCHHHHHHHHHH
AVGAGAYVFARRRNNSSSDGEGVVL
HHCCCEEEEEEECCCCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA