| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
Click here to switch to the map view.
The map label for this gene is pgi [H]
Identifier: 28572580
GI number: 28572580
Start: 466665
End: 468308
Strand: Reverse
Name: pgi [H]
Synonym: TW429
Alternate gene names: 28572580
Gene position: 468308-466665 (Counterclockwise)
Preceding gene: 28572581
Following gene: 28572579
Centisome position: 50.58
GC content: 45.38
Gene sequence:
>1644_bases GTGTTGCGCGATTTGTCGCGTAGTTGGGTAGTTTTGGAAGTTTTATCAAGTGAGAAAGAAAAGATCAGGTGCATTCTTGA TACCCTAGTTGATAAAAAAATTGCTTCGCGTATCTCTGCGAAGGATTGCTCGGTATGGGTGGAAAGTGCAAGAGAGGAAG CCTCAAGACGTCTTGGATGGCTTGATGTATACGATCACTCTCTCCCCGTTGCACAATCAGCAAAGGCGTTAAGAAATGAT CTTCTCAAAAATGGGGTTGACCGCTTTGTCTTGAGTGGCATGGGTGGCTCTTCTCTCGCTTCTGAGTTGATGAGTGATTA CTTTCAAACATCTCTTATTGTTCTTGATACAACCGATCCTGATCACGTATTCAGAGTCGCATCCGAGCCACTCGACAGGA CTTCCCTCATATTATCTTCCAAATCCGGTAGCACGCTTGAGGTTGATTCGCACAGGCGCTTGTTTGAAAAACACTTTAAA GGCTCTGGAATAGACCCAAGTAGCCGTATTATTTGCATAACTGACCCTAACTCACCATTAGACTTACTCGCGCAAGAAAA GGGTTACAGAGTATTTAATGCAGATCCAAGTGTTGGCGGGCGATTCTCTGCCCTAACAGCCTTTGGAATCGTACCATTAG TGTTGTGCGGAATAGATGTTACTCCGATACTATCTGCAGCGAAGCGGGCCCTTGTTGCACTAAAGGAAGATAGCCAAGCA AATCCGGCGCTTATACTTGGCGCATTGTTAGCTGTTGAGGGTAAGGCCGCAATTGCTTCCGAAAGCCTTATAGGAAATTG GATAGAACAATTATTGGCAGAGTCAACAGGTAAAGATTTAACCGGGGTTTTGCCAATTGTTACGAATGGTGACCTGTCTA AAGTCAGACTGGAAGGTGTGTCGTATTTTGATGTACGGCTAGAAGATGGATCTAGGAATTCTAGCGAGAATTCTAGTGAG AAAAGTATTCAATCTGAGACAGAGTGTGCGGATAAAGAGTTCTGTGCTCGAATTACTGCGGGGCTTGGCGAACAATTCGT ATTGTGGGAGTTTGCAACTGCTGTTTTAGGGCATATTCTCTCCATAAACCCCTTTGACCAGCCTGATGTAGAAAAGGCTA AGGAGGCGACAAGAGGTATTTTAGGCAACTTTAAAAAACCTGAAGATGAGCCCGTTATATCTCTTCAAAACGGTATAAAG ACCCTTGGAGGTGCCTGTACTCAGAATCTTGGTGAGTTATTAGATACCCTTGGGAGGGCAATCCCGCCCTCCGGGTATCT TGCGATTCAAGCATATTTAGACCCAAAGAATGACGATGGGGTAATGGATCTTGTCAAGTACATGGTGCTGCGCTATAACA GGCCTGTTACATTCGGTTGGGGTCCGAGGTTTTTGCATTCAACTGGGCAGTATCACAAGGGTGGCCCCCGAATTGGCAGC TTCTTGCAACTTGTAACGGATTCTGACAGGTGTTTGGAGATACCGGGCTTGGGTTTTGATTTTGGGAAGTTGATAAGATC TCAGGCCGCGGGTGATGCGCAGGTTCTAAGGTCCATCGGACGACCTGTTTTGACTCTTTTTGTAAATTCATTAGAAGATC TGACTTTGAATCTGCCAGGCCTAGAGCCATCTCTATCCAATTGA
Upstream 100 bases:
>100_bases ACAGACAAGCTTGAAGCTGATGGTGTTAAACAGTTTATAGATTCCTGGAATCAGTTAAAGTCGAATGTGAGGTCCCGCTT CTGAGCCTTTGCGGCTTGCG
Downstream 100 bases:
>100_bases ACTGATCGCGCATATGGATTTTAAAACAGAAGTGGAATATAAATGCCAAAGGTGAATTGCGCAACACAGCAGATTGCCCT GCCTGGGGCGCTTGCTATAT
Product: glucose-6-phosphate isomerase
Products: NA
Alternate protein names: GPI; Phosphoglucose isomerase; PGI; Phosphohexose isomerase; PHI [H]
Number of amino acids: Translated: 547; Mature: 547
Protein sequence:
>547_residues MLRDLSRSWVVLEVLSSEKEKIRCILDTLVDKKIASRISAKDCSVWVESAREEASRRLGWLDVYDHSLPVAQSAKALRND LLKNGVDRFVLSGMGGSSLASELMSDYFQTSLIVLDTTDPDHVFRVASEPLDRTSLILSSKSGSTLEVDSHRRLFEKHFK GSGIDPSSRIICITDPNSPLDLLAQEKGYRVFNADPSVGGRFSALTAFGIVPLVLCGIDVTPILSAAKRALVALKEDSQA NPALILGALLAVEGKAAIASESLIGNWIEQLLAESTGKDLTGVLPIVTNGDLSKVRLEGVSYFDVRLEDGSRNSSENSSE KSIQSETECADKEFCARITAGLGEQFVLWEFATAVLGHILSINPFDQPDVEKAKEATRGILGNFKKPEDEPVISLQNGIK TLGGACTQNLGELLDTLGRAIPPSGYLAIQAYLDPKNDDGVMDLVKYMVLRYNRPVTFGWGPRFLHSTGQYHKGGPRIGS FLQLVTDSDRCLEIPGLGFDFGKLIRSQAAGDAQVLRSIGRPVLTLFVNSLEDLTLNLPGLEPSLSN
Sequences:
>Translated_547_residues MLRDLSRSWVVLEVLSSEKEKIRCILDTLVDKKIASRISAKDCSVWVESAREEASRRLGWLDVYDHSLPVAQSAKALRND LLKNGVDRFVLSGMGGSSLASELMSDYFQTSLIVLDTTDPDHVFRVASEPLDRTSLILSSKSGSTLEVDSHRRLFEKHFK GSGIDPSSRIICITDPNSPLDLLAQEKGYRVFNADPSVGGRFSALTAFGIVPLVLCGIDVTPILSAAKRALVALKEDSQA NPALILGALLAVEGKAAIASESLIGNWIEQLLAESTGKDLTGVLPIVTNGDLSKVRLEGVSYFDVRLEDGSRNSSENSSE KSIQSETECADKEFCARITAGLGEQFVLWEFATAVLGHILSINPFDQPDVEKAKEATRGILGNFKKPEDEPVISLQNGIK TLGGACTQNLGELLDTLGRAIPPSGYLAIQAYLDPKNDDGVMDLVKYMVLRYNRPVTFGWGPRFLHSTGQYHKGGPRIGS FLQLVTDSDRCLEIPGLGFDFGKLIRSQAAGDAQVLRSIGRPVLTLFVNSLEDLTLNLPGLEPSLSN >Mature_547_residues MLRDLSRSWVVLEVLSSEKEKIRCILDTLVDKKIASRISAKDCSVWVESAREEASRRLGWLDVYDHSLPVAQSAKALRND LLKNGVDRFVLSGMGGSSLASELMSDYFQTSLIVLDTTDPDHVFRVASEPLDRTSLILSSKSGSTLEVDSHRRLFEKHFK GSGIDPSSRIICITDPNSPLDLLAQEKGYRVFNADPSVGGRFSALTAFGIVPLVLCGIDVTPILSAAKRALVALKEDSQA NPALILGALLAVEGKAAIASESLIGNWIEQLLAESTGKDLTGVLPIVTNGDLSKVRLEGVSYFDVRLEDGSRNSSENSSE KSIQSETECADKEFCARITAGLGEQFVLWEFATAVLGHILSINPFDQPDVEKAKEATRGILGNFKKPEDEPVISLQNGIK TLGGACTQNLGELLDTLGRAIPPSGYLAIQAYLDPKNDDGVMDLVKYMVLRYNRPVTFGWGPRFLHSTGQYHKGGPRIGS FLQLVTDSDRCLEIPGLGFDFGKLIRSQAAGDAQVLRSIGRPVLTLFVNSLEDLTLNLPGLEPSLSN
Specific function: Unknown
COG id: COG0166
COG function: function code G; Glucose-6-phosphate isomerase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GPI family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001672 - InterPro: IPR023096 - InterPro: IPR018189 [H]
Pfam domain/function: PF00342 PGI [H]
EC number: =5.3.1.9 [H]
Molecular weight: Translated: 59420; Mature: 59420
Theoretical pI: Translated: 5.02; Mature: 5.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRDLSRSWVVLEVLSSEKEKIRCILDTLVDKKIASRISAKDCSVWVESAREEASRRLGW CCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCC LDVYDHSLPVAQSAKALRNDLLKNGVDRFVLSGMGGSSLASELMSDYFQTSLIVLDTTDP EEECCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHCEEEEEECCCH DHVFRVASEPLDRTSLILSSKSGSTLEVDSHRRLFEKHFKGSGIDPSSRIICITDPNSPL HHHHHHHCCCCCCHHEEEECCCCCEEEEHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCH DLLAQEKGYRVFNADPSVGGRFSALTAFGIVPLVLCGIDVTPILSAAKRALVALKEDSQA HHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC NPALILGALLAVEGKAAIASESLIGNWIEQLLAESTGKDLTGVLPIVTNGDLSKVRLEGV CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEECCC SYFDVRLEDGSRNSSENSSEKSIQSETECADKEFCARITAGLGEQFVLWEFATAVLGHIL EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH SINPFDQPDVEKAKEATRGILGNFKKPEDEPVISLQNGIKTLGGACTQNLGELLDTLGRA CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHC IPPSGYLAIQAYLDPKNDDGVMDLVKYMVLRYNRPVTFGWGPRFLHSTGQYHKGGPRIGS CCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEECCCHHHHHCCCCCCCCCCCHHH FLQLVTDSDRCLEIPGLGFDFGKLIRSQAAGDAQVLRSIGRPVLTLFVNSLEDLTLNLPG HHHHHCCCCCEEECCCCCCHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHCEEECCC LEPSLSN CCCCCCC >Mature Secondary Structure MLRDLSRSWVVLEVLSSEKEKIRCILDTLVDKKIASRISAKDCSVWVESAREEASRRLGW CCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCC LDVYDHSLPVAQSAKALRNDLLKNGVDRFVLSGMGGSSLASELMSDYFQTSLIVLDTTDP EEECCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHCEEEEEECCCH DHVFRVASEPLDRTSLILSSKSGSTLEVDSHRRLFEKHFKGSGIDPSSRIICITDPNSPL HHHHHHHCCCCCCHHEEEECCCCCEEEEHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCH DLLAQEKGYRVFNADPSVGGRFSALTAFGIVPLVLCGIDVTPILSAAKRALVALKEDSQA HHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC NPALILGALLAVEGKAAIASESLIGNWIEQLLAESTGKDLTGVLPIVTNGDLSKVRLEGV CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEECCC SYFDVRLEDGSRNSSENSSEKSIQSETECADKEFCARITAGLGEQFVLWEFATAVLGHIL EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH SINPFDQPDVEKAKEATRGILGNFKKPEDEPVISLQNGIKTLGGACTQNLGELLDTLGRA CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHC IPPSGYLAIQAYLDPKNDDGVMDLVKYMVLRYNRPVTFGWGPRFLHSTGQYHKGGPRIGS CCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEECCCHHHHHCCCCCCCCCCCHHH FLQLVTDSDRCLEIPGLGFDFGKLIRSQAAGDAQVLRSIGRPVLTLFVNSLEDLTLNLPG HHHHHCCCCCEEECCCCCCHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHCEEECCC LEPSLSN CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10360571 [H]