| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is zwf [H]
Identifier: 28572579
GI number: 28572579
Start: 465159
End: 466622
Strand: Reverse
Name: zwf [H]
Synonym: TW428
Alternate gene names: 28572579
Gene position: 466622-465159 (Counterclockwise)
Preceding gene: 28572580
Following gene: 28572566
Centisome position: 50.39
GC content: 42.83
Gene sequence:
>1464_bases ATGCCAAAGGTGAATTGCGCAACACAGCAGATTGCCCTGCCTGGGGCGCTTGCTATATTCGGGGCAACGGGTGACCTGAG CTCCAAAAAACTATTGCCAGCGGTGTACGACTTGTTTCATAACTCTCTTCTATCAAATGGGTTCGTTTTAATTGCTCTGA ATAGAGACTTCTCGGCGCAAGATTTTATCTGTCACTTCCGCCATTGCGTTAAGTCTTTCTCTAGGACGGGATGGTCAGAG TCTGTTTTTCTTGATCTCCAAAAAAGGGTACATCATGTAAGTGGCGACTTTTCCGACCCCGAGACATATATTGAGCTCTC TGAGAAATTAGAAACCACCAAAGAGGAAACTGGGGGTAATTGTGTTTTTTATCTCTCAGTTCCGCCAAATGTATTTACTC CCATCATGAAAAACTTGTCTGCTAGTGGGCTGTCTAGAGGATGTTTGCATAAAATTGCTGTTGAAAAACCCTTTGGTAAT GACCTTAAAAGTGCAATACAGCTTAATTCAGTGCTTAGGTCAGCTTTCCCTGAGCGTGCTATCTTTCGGGTTGATCACTA TCTTGGTAAAGAGACCATTCAAAATATTCTTACTTTTCGTTTTGGAAACCAAATCTTTGACCCTATTTGGAATAGGAAAC ATGTTGATCATGTGCAGATTACGATGTCTGAAGATATAGGGGTTGAGGGTCGCAGTAAGTACTATGACGGAATCGGTGCT GCACGTGATGTATTACAAAATCATCTTTTGCAGCTTATGGCTCTAATTACGATGGAGAGACCCTCGAATTTGAATAACGC GAGTGATATAAGGCACGAGAAGCAGAGAGTTTTGGAATGTGTGAGTCTTCCGAAAAATATAGCTCAAAATGCTGTTCGTG GCCAATACTCATCCGGCTATCTACGGGATGAGAGGGTTGTATCTTTTTTGCAAGAAGATGGGGTTAATCCATCTTCAAGA ACTGAAACATTCGCGGCGATAAAGCTAAATGCCGATAATGAACGTTGGTATGGTGTACCTTTCTACGTTAGAACTGGGAA ACGGATGGCAAAACGTAGTGCATATATAAGTCTTGTATTCAAGCCAACTGATATGAGTATTTTGCAAAATGTGATTGTTA TAAGGTTGCAACCAGACGAGGGTGTGTCTATTTGGTTTGCGTCGAAAGTGCCCGGTTATCGTTCTGATATTCGACAGGTG AATTTTGATTTTTCGTATAAAAGCTCATTTACTGAATCAAGTCCAGAGGCTTATGAACGCTTAATTCTGGATGCAATGAG GGGTGAGGCCTCCTTGTTTCCGCAGCAAAGAGAAGTGGAGTTGTGTTGGGGCATAATAGACCCCCTTGAGGAGGTTTGGG AAAACGACAATACCCTGATACCCCAATACACTCCAGGAAGTTGGGGGCCAGATACTTCAAACGACCTTTTGCTCAGAACG TCCAGGCACTGGAGAAATTACTGA
Upstream 100 bases:
>100_bases TTCATTAGAAGATCTGACTTTGAATCTGCCAGGCCTAGAGCCATCTCTATCCAATTGAACTGATCGCGCATATGGATTTT AAAACAGAAGTGGAATATAA
Downstream 100 bases:
>100_bases TTATAAGTCTTCTTCTTGAAGCTCAAACCTCCCAGGATGCCTACAACGACCAGTACGGCGCAGGGAAGAAGTAAAACTTT TAAGTCGAATATAAGAAATA
Product: glucose-6-phosphate 1-dehydrogenase
Products: NA
Alternate protein names: G6PD [H]
Number of amino acids: Translated: 487; Mature: 486
Protein sequence:
>487_residues MPKVNCATQQIALPGALAIFGATGDLSSKKLLPAVYDLFHNSLLSNGFVLIALNRDFSAQDFICHFRHCVKSFSRTGWSE SVFLDLQKRVHHVSGDFSDPETYIELSEKLETTKEETGGNCVFYLSVPPNVFTPIMKNLSASGLSRGCLHKIAVEKPFGN DLKSAIQLNSVLRSAFPERAIFRVDHYLGKETIQNILTFRFGNQIFDPIWNRKHVDHVQITMSEDIGVEGRSKYYDGIGA ARDVLQNHLLQLMALITMERPSNLNNASDIRHEKQRVLECVSLPKNIAQNAVRGQYSSGYLRDERVVSFLQEDGVNPSSR TETFAAIKLNADNERWYGVPFYVRTGKRMAKRSAYISLVFKPTDMSILQNVIVIRLQPDEGVSIWFASKVPGYRSDIRQV NFDFSYKSSFTESSPEAYERLILDAMRGEASLFPQQREVELCWGIIDPLEEVWENDNTLIPQYTPGSWGPDTSNDLLLRT SRHWRNY
Sequences:
>Translated_487_residues MPKVNCATQQIALPGALAIFGATGDLSSKKLLPAVYDLFHNSLLSNGFVLIALNRDFSAQDFICHFRHCVKSFSRTGWSE SVFLDLQKRVHHVSGDFSDPETYIELSEKLETTKEETGGNCVFYLSVPPNVFTPIMKNLSASGLSRGCLHKIAVEKPFGN DLKSAIQLNSVLRSAFPERAIFRVDHYLGKETIQNILTFRFGNQIFDPIWNRKHVDHVQITMSEDIGVEGRSKYYDGIGA ARDVLQNHLLQLMALITMERPSNLNNASDIRHEKQRVLECVSLPKNIAQNAVRGQYSSGYLRDERVVSFLQEDGVNPSSR TETFAAIKLNADNERWYGVPFYVRTGKRMAKRSAYISLVFKPTDMSILQNVIVIRLQPDEGVSIWFASKVPGYRSDIRQV NFDFSYKSSFTESSPEAYERLILDAMRGEASLFPQQREVELCWGIIDPLEEVWENDNTLIPQYTPGSWGPDTSNDLLLRT SRHWRNY >Mature_486_residues PKVNCATQQIALPGALAIFGATGDLSSKKLLPAVYDLFHNSLLSNGFVLIALNRDFSAQDFICHFRHCVKSFSRTGWSES VFLDLQKRVHHVSGDFSDPETYIELSEKLETTKEETGGNCVFYLSVPPNVFTPIMKNLSASGLSRGCLHKIAVEKPFGND LKSAIQLNSVLRSAFPERAIFRVDHYLGKETIQNILTFRFGNQIFDPIWNRKHVDHVQITMSEDIGVEGRSKYYDGIGAA RDVLQNHLLQLMALITMERPSNLNNASDIRHEKQRVLECVSLPKNIAQNAVRGQYSSGYLRDERVVSFLQEDGVNPSSRT ETFAAIKLNADNERWYGVPFYVRTGKRMAKRSAYISLVFKPTDMSILQNVIVIRLQPDEGVSIWFASKVPGYRSDIRQVN FDFSYKSSFTESSPEAYERLILDAMRGEASLFPQQREVELCWGIIDPLEEVWENDNTLIPQYTPGSWGPDTSNDLLLRTS RHWRNY
Specific function: Pentose phosphate pathway; first step. [C]
COG id: COG0364
COG function: function code G; Glucose-6-phosphate 1-dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glucose-6-phosphate dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI109389365, Length=471, Percent_Identity=36.5180467091295, Blast_Score=295, Evalue=6e-80, Organism=Homo sapiens, GI108773793, Length=471, Percent_Identity=36.5180467091295, Blast_Score=295, Evalue=6e-80, Organism=Homo sapiens, GI52145310, Length=361, Percent_Identity=34.0720221606648, Blast_Score=182, Evalue=7e-46, Organism=Escherichia coli, GI1788158, Length=495, Percent_Identity=36.5656565656566, Blast_Score=341, Evalue=5e-95, Organism=Caenorhabditis elegans, GI17538218, Length=479, Percent_Identity=34.2379958246347, Blast_Score=286, Evalue=1e-77, Organism=Saccharomyces cerevisiae, GI6324088, Length=467, Percent_Identity=36.1884368308351, Blast_Score=288, Evalue=2e-78, Organism=Drosophila melanogaster, GI24643350, Length=470, Percent_Identity=33.4042553191489, Blast_Score=269, Evalue=3e-72, Organism=Drosophila melanogaster, GI24643352, Length=470, Percent_Identity=33.1914893617021, Blast_Score=269, Evalue=3e-72, Organism=Drosophila melanogaster, GI221513548, Length=478, Percent_Identity=27.8242677824268, Blast_Score=190, Evalue=2e-48,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001282 - InterPro: IPR019796 - InterPro: IPR022675 - InterPro: IPR022674 - InterPro: IPR016040 [H]
Pfam domain/function: PF02781 G6PD_C; PF00479 G6PD_N [H]
EC number: =1.1.1.49 [H]
Molecular weight: Translated: 55323; Mature: 55192
Theoretical pI: Translated: 7.13; Mature: 7.13
Prosite motif: PS00069 G6P_DEHYDROGENASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKVNCATQQIALPGALAIFGATGDLSSKKLLPAVYDLFHNSLLSNGFVLIALNRDFSAQ CCCCCCCHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCHH DFICHFRHCVKSFSRTGWSESVFLDLQKRVHHVSGDFSDPETYIELSEKLETTKEETGGN HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC CVFYLSVPPNVFTPIMKNLSASGLSRGCLHKIAVEKPFGNDLKSAIQLNSVLRSAFPERA EEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHH IFRVDHYLGKETIQNILTFRFGNQIFDPIWNRKHVDHVQITMSEDIGVEGRSKYYDGIGA HHHHHHHHCHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHCHHH ARDVLQNHLLQLMALITMERPSNLNNASDIRHEKQRVLECVSLPKNIAQNAVRGQYSSGY HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC LRDERVVSFLQEDGVNPSSRTETFAAIKLNADNERWYGVPFYVRTGKRMAKRSAYISLVF CCHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCEEECCCEEEECCHHHHHCCEEEEEEE KPTDMSILQNVIVIRLQPDEGVSIWFASKVPGYRSDIRQVNFDFSYKSSFTESSPEAYER CCCCHHHHCCEEEEEECCCCCCEEEEECCCCCHHHHHHEECCCCCCCCCCCCCCHHHHHH LILDAMRGEASLFPQQREVELCWGIIDPLEEVWENDNTLIPQYTPGSWGPDTSNDLLLRT HHHHHHCCCHHCCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCEEEEE SRHWRNY CHHCCCC >Mature Secondary Structure PKVNCATQQIALPGALAIFGATGDLSSKKLLPAVYDLFHNSLLSNGFVLIALNRDFSAQ CCCCCCHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCHH DFICHFRHCVKSFSRTGWSESVFLDLQKRVHHVSGDFSDPETYIELSEKLETTKEETGGN HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC CVFYLSVPPNVFTPIMKNLSASGLSRGCLHKIAVEKPFGNDLKSAIQLNSVLRSAFPERA EEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHH IFRVDHYLGKETIQNILTFRFGNQIFDPIWNRKHVDHVQITMSEDIGVEGRSKYYDGIGA HHHHHHHHCHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHCHHH ARDVLQNHLLQLMALITMERPSNLNNASDIRHEKQRVLECVSLPKNIAQNAVRGQYSSGY HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC LRDERVVSFLQEDGVNPSSRTETFAAIKLNADNERWYGVPFYVRTGKRMAKRSAYISLVF CCHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCEEECCCEEEECCHHHHHCCEEEEEEE KPTDMSILQNVIVIRLQPDEGVSIWFASKVPGYRSDIRQVNFDFSYKSSFTESSPEAYER CCCCHHHHCCEEEEEECCCCCCEEEEECCCCCHHHHHHEECCCCCCCCCCCCCCHHHHHH LILDAMRGEASLFPQQREVELCWGIIDPLEEVWENDNTLIPQYTPGSWGPDTSNDLLLRT HHHHHHCCCHHCCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCEEEEE SRHWRNY CHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]