| Definition | Tropheryma whipplei TW08/27, complete genome. |
|---|---|
| Accession | NC_004551 |
| Length | 925,938 |
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The map label for this gene is tal [H]
Identifier: 28572581
GI number: 28572581
Start: 468325
End: 469419
Strand: Reverse
Name: tal [H]
Synonym: TW430
Alternate gene names: 28572581
Gene position: 469419-468325 (Counterclockwise)
Preceding gene: 28572582
Following gene: 28572580
Centisome position: 50.7
GC content: 45.48
Gene sequence:
>1095_bases GTGGTGAATAGCCTGCAGAAATTATCTACTGCCGGTGTAAGTGTGTGGCTTGATGACCTTTCCCGTTCGAGAATTACTGA TGGTGACCTGAAGAAGAGGATTGAGAAGCAGTGCGTTGTTGGGGTTACAACTAATCCAAGTATTTTTGCCAAATCCATTG CCTCTAGCCGTGATTACGATTCCTCGTTTAAAAACGCATTTTCGAGAGGATGCACCCTTGATGAGGCAGTCTTAAGTGTG ATTTCTGAGGATGTTAGTGGGGCGCTTGATCTGCTGGCAGATTCTTATAGCGCTTCGAAGGGTATTGATGGCAGGGTTAG CATAGAAGTTGACCCAACTCTTGCGTATGACACGGAGGGAACATTCCGTTCCGTGAAAAGCATATGGGAGTCAATTAACA AGCCTAACTTGTATGTGAAAATTCCCGCTACGCGGGAAGGGTTAGAGGCTATCTCGCAGTCGATTGCTTCTGGAGTGTGT GTTAATGTCACGCTGATATTTAGTCTTCAGAGGTACAGAGAAGTTATAGATGCCTATCTCACAGGCCTTGAGCGTGCTGT TGAAGCAGGAAGATCCATTGAAAACATTTTTTCTGTTGCCAGCTTTTTCGTCTCCCGCTTTGATGTCTATGTTGATGAGC AATTAGATAACATCGGCACACCGCAGGCTCTTCACTTGAAGGGCAGGGCTGCAGTTGCGAATGCCAGACTTGCTTATGAG GTGTATGAGGAGGCTTTTGCGACACCAAGATATAAGATCCTTGCAGATAAGGGAGCCAATAAACAGCGACCGTTATGGGC TAGTACCGGTGTGAAAAATCCGAGATACCCCGATACCTGTTACGTTACAAATCTAGTGGCACGAGATGTTGTAAACACCA TGCCAGAGGCTACACTTGATGCAGTGAATGATCATGGTGAAATAAGGGGCGATACAATAACTGGCACATACGAAGATTCA AGAGCCATCCTCAGTGAACTTGCTGAACTTGGCGTGAATTATACTGAGGTAACAGACAAGCTTGAAGCTGATGGTGTTAA ACAGTTTATAGATTCCTGGAATCAGTTAAAGTCGAATGTGAGGTCCCGCTTCTGA
Upstream 100 bases:
>100_bases GAACACTATGGAGCATCAGCCGCTGGGGATGTTCTTTTTGAACGTTTCGGTTTTACCGTTGAGAATATTGTAAAAACAGC AGATGCTCTGTTGGGAGGGT
Downstream 100 bases:
>100_bases GCCTTTGCGGCTTGCGGTGTTGCGCGATTTGTCGCGTAGTTGGGTAGTTTTGGAAGTTTTATCAAGTGAGAAAGAAAAGA TCAGGTGCATTCTTGATACC
Product: transaldolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 364; Mature: 364
Protein sequence:
>364_residues MVNSLQKLSTAGVSVWLDDLSRSRITDGDLKKRIEKQCVVGVTTNPSIFAKSIASSRDYDSSFKNAFSRGCTLDEAVLSV ISEDVSGALDLLADSYSASKGIDGRVSIEVDPTLAYDTEGTFRSVKSIWESINKPNLYVKIPATREGLEAISQSIASGVC VNVTLIFSLQRYREVIDAYLTGLERAVEAGRSIENIFSVASFFVSRFDVYVDEQLDNIGTPQALHLKGRAAVANARLAYE VYEEAFATPRYKILADKGANKQRPLWASTGVKNPRYPDTCYVTNLVARDVVNTMPEATLDAVNDHGEIRGDTITGTYEDS RAILSELAELGVNYTEVTDKLEADGVKQFIDSWNQLKSNVRSRF
Sequences:
>Translated_364_residues MVNSLQKLSTAGVSVWLDDLSRSRITDGDLKKRIEKQCVVGVTTNPSIFAKSIASSRDYDSSFKNAFSRGCTLDEAVLSV ISEDVSGALDLLADSYSASKGIDGRVSIEVDPTLAYDTEGTFRSVKSIWESINKPNLYVKIPATREGLEAISQSIASGVC VNVTLIFSLQRYREVIDAYLTGLERAVEAGRSIENIFSVASFFVSRFDVYVDEQLDNIGTPQALHLKGRAAVANARLAYE VYEEAFATPRYKILADKGANKQRPLWASTGVKNPRYPDTCYVTNLVARDVVNTMPEATLDAVNDHGEIRGDTITGTYEDS RAILSELAELGVNYTEVTDKLEADGVKQFIDSWNQLKSNVRSRF >Mature_364_residues MVNSLQKLSTAGVSVWLDDLSRSRITDGDLKKRIEKQCVVGVTTNPSIFAKSIASSRDYDSSFKNAFSRGCTLDEAVLSV ISEDVSGALDLLADSYSASKGIDGRVSIEVDPTLAYDTEGTFRSVKSIWESINKPNLYVKIPATREGLEAISQSIASGVC VNVTLIFSLQRYREVIDAYLTGLERAVEAGRSIENIFSVASFFVSRFDVYVDEQLDNIGTPQALHLKGRAAVANARLAYE VYEEAFATPRYKILADKGANKQRPLWASTGVKNPRYPDTCYVTNLVARDVVNTMPEATLDAVNDHGEIRGDTITGTYEDS RAILSELAELGVNYTEVTDKLEADGVKQFIDSWNQLKSNVRSRF
Specific function: Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway [H]
COG id: COG0176
COG function: function code G; Transaldolase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transaldolase family. Type 2 subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR001585 - InterPro: IPR004732 - InterPro: IPR018225 - InterPro: IPR014634 [H]
Pfam domain/function: PF00923 Transaldolase [H]
EC number: =2.2.1.2 [H]
Molecular weight: Translated: 40062; Mature: 40062
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: PS01054 TRANSALDOLASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVNSLQKLSTAGVSVWLDDLSRSRITDGDLKKRIEKQCVVGVTTNPSIFAKSIASSRDYD CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCCCHHHHHHHHHCCCCCC SSFKNAFSRGCTLDEAVLSVISEDVSGALDLLADSYSASKGIDGRVSIEVDPTLAYDTEG HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEECCCH TFRSVKSIWESINKPNLYVKIPATREGLEAISQSIASGVCVNVTLIFSLQRYREVIDAYL HHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH TGLERAVEAGRSIENIFSVASFFVSRFDVYVDEQLDNIGTPQALHLKGRAAVANARLAYE HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHH VYEEAFATPRYKILADKGANKQRPLWASTGVKNPRYPDTCYVTNLVARDVVNTMPEATLD HHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHH AVNDHGEIRGDTITGTYEDSRAILSELAELGVNYTEVTDKLEADGVKQFIDSWNQLKSNV HHCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RSRF HHCC >Mature Secondary Structure MVNSLQKLSTAGVSVWLDDLSRSRITDGDLKKRIEKQCVVGVTTNPSIFAKSIASSRDYD CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCCCHHHHHHHHHCCCCCC SSFKNAFSRGCTLDEAVLSVISEDVSGALDLLADSYSASKGIDGRVSIEVDPTLAYDTEG HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEECCCH TFRSVKSIWESINKPNLYVKIPATREGLEAISQSIASGVCVNVTLIFSLQRYREVIDAYL HHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH TGLERAVEAGRSIENIFSVASFFVSRFDVYVDEQLDNIGTPQALHLKGRAAVANARLAYE HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHH VYEEAFATPRYKILADKGANKQRPLWASTGVKNPRYPDTCYVTNLVARDVVNTMPEATLD HHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHH AVNDHGEIRGDTITGTYEDSRAILSELAELGVNYTEVTDKLEADGVKQFIDSWNQLKSNV HHCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RSRF HHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA