Definition Tropheryma whipplei TW08/27, complete genome.
Accession NC_004551
Length 925,938

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The map label for this gene is tal [H]

Identifier: 28572581

GI number: 28572581

Start: 468325

End: 469419

Strand: Reverse

Name: tal [H]

Synonym: TW430

Alternate gene names: 28572581

Gene position: 469419-468325 (Counterclockwise)

Preceding gene: 28572582

Following gene: 28572580

Centisome position: 50.7

GC content: 45.48

Gene sequence:

>1095_bases
GTGGTGAATAGCCTGCAGAAATTATCTACTGCCGGTGTAAGTGTGTGGCTTGATGACCTTTCCCGTTCGAGAATTACTGA
TGGTGACCTGAAGAAGAGGATTGAGAAGCAGTGCGTTGTTGGGGTTACAACTAATCCAAGTATTTTTGCCAAATCCATTG
CCTCTAGCCGTGATTACGATTCCTCGTTTAAAAACGCATTTTCGAGAGGATGCACCCTTGATGAGGCAGTCTTAAGTGTG
ATTTCTGAGGATGTTAGTGGGGCGCTTGATCTGCTGGCAGATTCTTATAGCGCTTCGAAGGGTATTGATGGCAGGGTTAG
CATAGAAGTTGACCCAACTCTTGCGTATGACACGGAGGGAACATTCCGTTCCGTGAAAAGCATATGGGAGTCAATTAACA
AGCCTAACTTGTATGTGAAAATTCCCGCTACGCGGGAAGGGTTAGAGGCTATCTCGCAGTCGATTGCTTCTGGAGTGTGT
GTTAATGTCACGCTGATATTTAGTCTTCAGAGGTACAGAGAAGTTATAGATGCCTATCTCACAGGCCTTGAGCGTGCTGT
TGAAGCAGGAAGATCCATTGAAAACATTTTTTCTGTTGCCAGCTTTTTCGTCTCCCGCTTTGATGTCTATGTTGATGAGC
AATTAGATAACATCGGCACACCGCAGGCTCTTCACTTGAAGGGCAGGGCTGCAGTTGCGAATGCCAGACTTGCTTATGAG
GTGTATGAGGAGGCTTTTGCGACACCAAGATATAAGATCCTTGCAGATAAGGGAGCCAATAAACAGCGACCGTTATGGGC
TAGTACCGGTGTGAAAAATCCGAGATACCCCGATACCTGTTACGTTACAAATCTAGTGGCACGAGATGTTGTAAACACCA
TGCCAGAGGCTACACTTGATGCAGTGAATGATCATGGTGAAATAAGGGGCGATACAATAACTGGCACATACGAAGATTCA
AGAGCCATCCTCAGTGAACTTGCTGAACTTGGCGTGAATTATACTGAGGTAACAGACAAGCTTGAAGCTGATGGTGTTAA
ACAGTTTATAGATTCCTGGAATCAGTTAAAGTCGAATGTGAGGTCCCGCTTCTGA

Upstream 100 bases:

>100_bases
GAACACTATGGAGCATCAGCCGCTGGGGATGTTCTTTTTGAACGTTTCGGTTTTACCGTTGAGAATATTGTAAAAACAGC
AGATGCTCTGTTGGGAGGGT

Downstream 100 bases:

>100_bases
GCCTTTGCGGCTTGCGGTGTTGCGCGATTTGTCGCGTAGTTGGGTAGTTTTGGAAGTTTTATCAAGTGAGAAAGAAAAGA
TCAGGTGCATTCTTGATACC

Product: transaldolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MVNSLQKLSTAGVSVWLDDLSRSRITDGDLKKRIEKQCVVGVTTNPSIFAKSIASSRDYDSSFKNAFSRGCTLDEAVLSV
ISEDVSGALDLLADSYSASKGIDGRVSIEVDPTLAYDTEGTFRSVKSIWESINKPNLYVKIPATREGLEAISQSIASGVC
VNVTLIFSLQRYREVIDAYLTGLERAVEAGRSIENIFSVASFFVSRFDVYVDEQLDNIGTPQALHLKGRAAVANARLAYE
VYEEAFATPRYKILADKGANKQRPLWASTGVKNPRYPDTCYVTNLVARDVVNTMPEATLDAVNDHGEIRGDTITGTYEDS
RAILSELAELGVNYTEVTDKLEADGVKQFIDSWNQLKSNVRSRF

Sequences:

>Translated_364_residues
MVNSLQKLSTAGVSVWLDDLSRSRITDGDLKKRIEKQCVVGVTTNPSIFAKSIASSRDYDSSFKNAFSRGCTLDEAVLSV
ISEDVSGALDLLADSYSASKGIDGRVSIEVDPTLAYDTEGTFRSVKSIWESINKPNLYVKIPATREGLEAISQSIASGVC
VNVTLIFSLQRYREVIDAYLTGLERAVEAGRSIENIFSVASFFVSRFDVYVDEQLDNIGTPQALHLKGRAAVANARLAYE
VYEEAFATPRYKILADKGANKQRPLWASTGVKNPRYPDTCYVTNLVARDVVNTMPEATLDAVNDHGEIRGDTITGTYEDS
RAILSELAELGVNYTEVTDKLEADGVKQFIDSWNQLKSNVRSRF
>Mature_364_residues
MVNSLQKLSTAGVSVWLDDLSRSRITDGDLKKRIEKQCVVGVTTNPSIFAKSIASSRDYDSSFKNAFSRGCTLDEAVLSV
ISEDVSGALDLLADSYSASKGIDGRVSIEVDPTLAYDTEGTFRSVKSIWESINKPNLYVKIPATREGLEAISQSIASGVC
VNVTLIFSLQRYREVIDAYLTGLERAVEAGRSIENIFSVASFFVSRFDVYVDEQLDNIGTPQALHLKGRAAVANARLAYE
VYEEAFATPRYKILADKGANKQRPLWASTGVKNPRYPDTCYVTNLVARDVVNTMPEATLDAVNDHGEIRGDTITGTYEDS
RAILSELAELGVNYTEVTDKLEADGVKQFIDSWNQLKSNVRSRF

Specific function: Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway [H]

COG id: COG0176

COG function: function code G; Transaldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transaldolase family. Type 2 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR001585
- InterPro:   IPR004732
- InterPro:   IPR018225
- InterPro:   IPR014634 [H]

Pfam domain/function: PF00923 Transaldolase [H]

EC number: =2.2.1.2 [H]

Molecular weight: Translated: 40062; Mature: 40062

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS01054 TRANSALDOLASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNSLQKLSTAGVSVWLDDLSRSRITDGDLKKRIEKQCVVGVTTNPSIFAKSIASSRDYD
CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCCCHHHHHHHHHCCCCCC
SSFKNAFSRGCTLDEAVLSVISEDVSGALDLLADSYSASKGIDGRVSIEVDPTLAYDTEG
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEECCCH
TFRSVKSIWESINKPNLYVKIPATREGLEAISQSIASGVCVNVTLIFSLQRYREVIDAYL
HHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
TGLERAVEAGRSIENIFSVASFFVSRFDVYVDEQLDNIGTPQALHLKGRAAVANARLAYE
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHH
VYEEAFATPRYKILADKGANKQRPLWASTGVKNPRYPDTCYVTNLVARDVVNTMPEATLD
HHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHH
AVNDHGEIRGDTITGTYEDSRAILSELAELGVNYTEVTDKLEADGVKQFIDSWNQLKSNV
HHCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSRF
HHCC
>Mature Secondary Structure
MVNSLQKLSTAGVSVWLDDLSRSRITDGDLKKRIEKQCVVGVTTNPSIFAKSIASSRDYD
CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCCCHHHHHHHHHCCCCCC
SSFKNAFSRGCTLDEAVLSVISEDVSGALDLLADSYSASKGIDGRVSIEVDPTLAYDTEG
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEECCCH
TFRSVKSIWESINKPNLYVKIPATREGLEAISQSIASGVCVNVTLIFSLQRYREVIDAYL
HHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
TGLERAVEAGRSIENIFSVASFFVSRFDVYVDEQLDNIGTPQALHLKGRAAVANARLAYE
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHH
VYEEAFATPRYKILADKGANKQRPLWASTGVKNPRYPDTCYVTNLVARDVVNTMPEATLD
HHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHH
AVNDHGEIRGDTITGTYEDSRAILSELAELGVNYTEVTDKLEADGVKQFIDSWNQLKSNV
HHCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSRF
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA