Definition Tropheryma whipplei TW08/27, complete genome.
Accession NC_004551
Length 925,938

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The map label for this gene is 28572544

Identifier: 28572544

GI number: 28572544

Start: 425857

End: 427077

Strand: Reverse

Name: 28572544

Synonym: TW391

Alternate gene names: NA

Gene position: 427077-425857 (Counterclockwise)

Preceding gene: 28572566

Following gene: 28572543

Centisome position: 46.12

GC content: 41.28

Gene sequence:

>1221_bases
ATGTGTACACAGAGACTCCGAGTGGCACGAGATAAGGGATTAAAGATGCTCAGTGACAAATGGGGTTTTGTAGATGATGC
CCGCAATGTCTACCTAAGGAGTAACGGCGCTAATGTACTAATCGGGAACTACCCAGACGGAACACCTCAGGAAGCGCTGA
TCCACTATAGGCGGAAATATGACGCGGTACGTAAACGGGTTGAGATTATTCTTACCCGCACTCTCGTGCTTTACGCGCAG
CCACGGCAGATCGAAGAGCAAATATGTGGACTTGAGGAAGAAATTGCCTCTCCGAAGTTCTTAGGTGATATTACGGTTCT
ACGCGACAAGCTGACACTTGCTAGAAAAAATCTTGAGGAAGCTCAACGAAATCTTGCAGAAAGGCAAAAGAAAGTCTATG
AAGATAATTACGAGCTTGTTGCCAAGCTGGAAGCGCTGGTCAATGAAAAGAATAAAAACGGTGCACAAAGAAATAGAGAA
GCAAAAGCGATTCTGAAGAAGTGGTATGAACTTGAGAAACCAAAACATGCGGGCAGTCTGCACAAACGCATGAAAGTTGC
AAAGATGGAATTACAAAAAGACCTAGATAATTATTTCAAGGATCAACGAGCCAAGAACGATCGTGTTGTGCAGCAAAAAC
GGAGCATAATTCAAAAAGCCAAGTCCATAAAAAGGACAACAGATGCATATGCCCGGTATAAAACACTTCTAAACGAGTGG
AAATCCCTTCCAAAAGTACCAAGAAGTCAGGAGAATGAACTTTGGCAAAATTTCCGAACCGCAACAGCCGAACTCGTCGA
CAGGCATGAAAAAAGCCTCATAGAAATACAGGAGAAACAGAACGCAGCTTTCGAAGAGAAAGTAAAACTATTGGAAAAAG
GTAGAAGCATTCTGAGTATCGATGATTGCCGTAAGGCACGTAGGGAATATCTGGTGCTTGTAGACAAATGGGAAAAAATT
GGTAGTGTGCCAAAAGATAAAACAAAATCTCTTGAAGATGATCTACGCAAATTGGATTTGGCAATACGGAAAAAAGAAAA
TGAAGCTTGGGAAAAGAATGATACAGAAAAAAATCTACGATCAAGACTGCTTCTAGATCAGCTCGAGGCAAAGCTGCTGA
GCCTGGAAAATAGCCTTAAAGTCGAAACAAACACGGTGAATTCTGAAAAAATAAAAAATGAGATCGGAAAAACTAAGAGT
TTTATCGATATTATAAAATGA

Upstream 100 bases:

>100_bases
CCTAGAACACGATGACAAAGTAAACCCCCGAACAAACGAAAGAAGGATAGCATGGAAGTACTTTCTGAAAAAATCTGCCA
GAAAATCTGTATGGAAAAAT

Downstream 100 bases:

>100_bases
ACTTTTACCTGGTTATAAGGTATTTTTCAAAAATAATTTGACTTGCCAGGGGTTCTCGTACATCATCTCTCTATGAGTGC
GGAAAAGCGTAGATCTATTA

Product: hypothetical protein

Products: NA

Alternate protein names: ATPase; DNA Repair ATPase; Methyl-Accepting Chemotaxis Protein

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MCTQRLRVARDKGLKMLSDKWGFVDDARNVYLRSNGANVLIGNYPDGTPQEALIHYRRKYDAVRKRVEIILTRTLVLYAQ
PRQIEEQICGLEEEIASPKFLGDITVLRDKLTLARKNLEEAQRNLAERQKKVYEDNYELVAKLEALVNEKNKNGAQRNRE
AKAILKKWYELEKPKHAGSLHKRMKVAKMELQKDLDNYFKDQRAKNDRVVQQKRSIIQKAKSIKRTTDAYARYKTLLNEW
KSLPKVPRSQENELWQNFRTATAELVDRHEKSLIEIQEKQNAAFEEKVKLLEKGRSILSIDDCRKARREYLVLVDKWEKI
GSVPKDKTKSLEDDLRKLDLAIRKKENEAWEKNDTEKNLRSRLLLDQLEAKLLSLENSLKVETNTVNSEKIKNEIGKTKS
FIDIIK

Sequences:

>Translated_406_residues
MCTQRLRVARDKGLKMLSDKWGFVDDARNVYLRSNGANVLIGNYPDGTPQEALIHYRRKYDAVRKRVEIILTRTLVLYAQ
PRQIEEQICGLEEEIASPKFLGDITVLRDKLTLARKNLEEAQRNLAERQKKVYEDNYELVAKLEALVNEKNKNGAQRNRE
AKAILKKWYELEKPKHAGSLHKRMKVAKMELQKDLDNYFKDQRAKNDRVVQQKRSIIQKAKSIKRTTDAYARYKTLLNEW
KSLPKVPRSQENELWQNFRTATAELVDRHEKSLIEIQEKQNAAFEEKVKLLEKGRSILSIDDCRKARREYLVLVDKWEKI
GSVPKDKTKSLEDDLRKLDLAIRKKENEAWEKNDTEKNLRSRLLLDQLEAKLLSLENSLKVETNTVNSEKIKNEIGKTKS
FIDIIK
>Mature_406_residues
MCTQRLRVARDKGLKMLSDKWGFVDDARNVYLRSNGANVLIGNYPDGTPQEALIHYRRKYDAVRKRVEIILTRTLVLYAQ
PRQIEEQICGLEEEIASPKFLGDITVLRDKLTLARKNLEEAQRNLAERQKKVYEDNYELVAKLEALVNEKNKNGAQRNRE
AKAILKKWYELEKPKHAGSLHKRMKVAKMELQKDLDNYFKDQRAKNDRVVQQKRSIIQKAKSIKRTTDAYARYKTLLNEW
KSLPKVPRSQENELWQNFRTATAELVDRHEKSLIEIQEKQNAAFEEKVKLLEKGRSILSIDDCRKARREYLVLVDKWEKI
GSVPKDKTKSLEDDLRKLDLAIRKKENEAWEKNDTEKNLRSRLLLDQLEAKLLSLENSLKVETNTVNSEKIKNEIGKTKS
FIDIIK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47601; Mature: 47601

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCTQRLRVARDKGLKMLSDKWGFVDDARNVYLRSNGANVLIGNYPDGTPQEALIHYRRKY
CCCHHHHHHHHHCHHHHHHCCCCHHCCCCEEEEECCCEEEECCCCCCCHHHHHHHHHHHH
DAVRKRVEIILTRTLVLYAQPRQIEEQICGLEEEIASPKFLGDITVLRDKLTLARKNLEE
HHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
AQRNLAERQKKVYEDNYELVAKLEALVNEKNKNGAQRNREAKAILKKWYELEKPKHAGSL
HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHH
HKRMKVAKMELQKDLDNYFKDQRAKNDRVVQQKRSIIQKAKSIKRTTDAYARYKTLLNEW
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KSLPKVPRSQENELWQNFRTATAELVDRHEKSLIEIQEKQNAAFEEKVKLLEKGRSILSI
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEECH
DDCRKARREYLVLVDKWEKIGSVPKDKTKSLEDDLRKLDLAIRKKENEAWEKNDTEKNLR
HHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHH
SRLLLDQLEAKLLSLENSLKVETNTVNSEKIKNEIGKTKSFIDIIK
HHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MCTQRLRVARDKGLKMLSDKWGFVDDARNVYLRSNGANVLIGNYPDGTPQEALIHYRRKY
CCCHHHHHHHHHCHHHHHHCCCCHHCCCCEEEEECCCEEEECCCCCCCHHHHHHHHHHHH
DAVRKRVEIILTRTLVLYAQPRQIEEQICGLEEEIASPKFLGDITVLRDKLTLARKNLEE
HHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
AQRNLAERQKKVYEDNYELVAKLEALVNEKNKNGAQRNREAKAILKKWYELEKPKHAGSL
HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHH
HKRMKVAKMELQKDLDNYFKDQRAKNDRVVQQKRSIIQKAKSIKRTTDAYARYKTLLNEW
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KSLPKVPRSQENELWQNFRTATAELVDRHEKSLIEIQEKQNAAFEEKVKLLEKGRSILSI
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEECH
DDCRKARREYLVLVDKWEKIGSVPKDKTKSLEDDLRKLDLAIRKKENEAWEKNDTEKNLR
HHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHH
SRLLLDQLEAKLLSLENSLKVETNTVNSEKIKNEIGKTKSFIDIIK
HHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA