| Definition | Clostridium tetani E88 chromosome, complete genome. |
|---|---|
| Accession | NC_004557 |
| Length | 2,799,251 |
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The map label for this gene is 28211422
Identifier: 28211422
GI number: 28211422
Start: 1887448
End: 1887927
Strand: Direct
Name: 28211422
Synonym: CTC01774
Alternate gene names: NA
Gene position: 1887448-1887927 (Clockwise)
Preceding gene: 28211421
Following gene: 28211424
Centisome position: 67.43
GC content: 29.58
Gene sequence:
>480_bases GTGACACAGCCTTTAAATAATGAACAATTTAGGTGGATTTTCTTCCGTTTTACTACAGAAAATGTTATATTTTATTTCGT AGGCTCGTTTGCTTCGCTGAACATCGCTTGTTTTAGTGAAGAATTAAGATTTTCTGATCTAAGGAAGAAAATCAACCATA GTTATTCATTATTAGTTGTTAGTTATTTCCACAAACCTTCTTTGTATGCCTTTAAAAGTTCTTCTATTTTACCCTTGCAT CTAGTTCCATTACAACCACCAGATCCTGAACCAGTGATCTCGTTCACTTCTTCAATGGTTTTAGCACCCTTTCTTATAGC ATCTTTTATTTTAGTTCTATTTATAGCTTTACAAATACAAACTTTAGTTAATTTATCTAACATTTTACTATCTAAATTCT GCTCCAAATTTATCACTCCTCATTTGTATTTTGTGAATTTTTTTCTTGTTGTATTCTTTTATTATCATATCTTTTTATAG
Upstream 100 bases:
>100_bases TATTCTTAGTAGCCTATGAAAATGGTAAAGAAATTTCTAAGGAACTTATTTATAAAGATATATATAACCCGGGAAATAAA ATTGTGAAAAGAAAAAAGCT
Downstream 100 bases:
>100_bases CTTTATCTGCATATAGTTTTATAACTGCCATTATTGGCACCGCTAATATCATTCCTACAGGTCCATAAAGACCTCCTCCT AAAGTTACAGCAAATATTAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 159; Mature: 158
Protein sequence:
>159_residues MTQPLNNEQFRWIFFRFTTENVIFYFVGSFASLNIACFSEELRFSDLRKKINHSYSLLVVSYFHKPSLYAFKSSSILPLH LVPLQPPDPEPVISFTSSMVLAPFLIASFILVLFIALQIQTLVNLSNILLSKFCSKFITPHLYFVNFFLVVFFYYHIFL
Sequences:
>Translated_159_residues MTQPLNNEQFRWIFFRFTTENVIFYFVGSFASLNIACFSEELRFSDLRKKINHSYSLLVVSYFHKPSLYAFKSSSILPLH LVPLQPPDPEPVISFTSSMVLAPFLIASFILVLFIALQIQTLVNLSNILLSKFCSKFITPHLYFVNFFLVVFFYYHIFL >Mature_158_residues TQPLNNEQFRWIFFRFTTENVIFYFVGSFASLNIACFSEELRFSDLRKKINHSYSLLVVSYFHKPSLYAFKSSSILPLHL VPLQPPDPEPVISFTSSMVLAPFLIASFILVLFIALQIQTLVNLSNILLSKFCSKFITPHLYFVNFFLVVFFYYHIFL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18601; Mature: 18470
Theoretical pI: Translated: 9.06; Mature: 9.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQPLNNEQFRWIFFRFTTENVIFYFVGSFASLNIACFSEELRFSDLRKKINHSYSLLVV CCCCCCCCCEEEEEEEEECCCEEEEEECCHHHEEHEEHHHHHHHHHHHHHHCCCCEEEEE SYFHKPSLYAFKSSSILPLHLVPLQPPDPEPVISFTSSMVLAPFLIASFILVLFIALQIQ EECCCCCEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLVNLSNILLSKFCSKFITPHLYFVNFFLVVFFYYHIFL HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure TQPLNNEQFRWIFFRFTTENVIFYFVGSFASLNIACFSEELRFSDLRKKINHSYSLLVV CCCCCCCCEEEEEEEEECCCEEEEEECCHHHEEHEEHHHHHHHHHHHHHHCCCCEEEEE SYFHKPSLYAFKSSSILPLHLVPLQPPDPEPVISFTSSMVLAPFLIASFILVLFIALQIQ EECCCCCEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLVNLSNILLSKFCSKFITPHLYFVNFFLVVFFYYHIFL HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA