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The map label for this gene is gerKA [H]

Identifier: 28211424

GI number: 28211424

Start: 1889232

End: 1890719

Strand: Direct

Name: gerKA [H]

Synonym: CTC01776

Alternate gene names: 28211424

Gene position: 1889232-1890719 (Clockwise)

Preceding gene: 28211422

Following gene: 28211425

Centisome position: 67.49

GC content: 29.3

Gene sequence:

>1488_bases
TTGTTTAAAAAGGATGAAAAAGAAAACATTAATGATATAAATTCTAAACTTACAATAGATAATTTAAAGAATATATTAAT
GAAAAGTGATGATGTTCTTTTAAGGGAAATTAGTATTAATAAAAAGTTAAAGGGAACATTATTTTTCATTGATGGTCTTG
TAGACTCTAAATCAATAAGTGAATATATAATTGAGCCTTTAACCCAAATGCCTAGATTTACAGAATCAAAAACAGAAATA
GAAGTTATAAACCTTATTAGAGAAGGTGCCTTAACTTATTCATCTCAGACTGAAAAAAATACTTTAAAAGATGTAATTAA
CGGCATATTAGGAGGTAATGCAGCTCTTTTATTTCCTGGTGAAAATATAGCTTTTGTATTTGATGTTAAGGGTTTTGATA
AAAGAAATATAACTGAGCCTACAGATGAAAATGTAATTAAGGGTTCCAGAGATGTGTTTGTAGAAACCTTGAGAGTAAAT
ACTGCAACTGTTAGAAGAAAAATTAAATCTCCTAATTTAGTATTTGAAGAAATTATATTAGGTAAACAAACTCAAACATC
TATTAGCATTATTTATATGTCCAATATTGCAAATGAACAATTACTTAAAGAGTTAAAAAAAAGACTTGACAAAATAAATG
TTGATGCTATCTTATCACTTAATTCTATTGAGGATTATATTATTGATAAAAAGCTTTCAGCTTTTCCTCAATTAATCAAC
ACTGAAAGACCAGATAAATTTTGTTCAAATATAATAGAAGGAAGAATTGGACTGATTATAGATGGTCTACCTATATCCAT
TATAATTCCAGGAACTCTTGTTCAATTTATTCAAGCTACAGAGGATTATTCACAAAATTATATTATAAGTTCCATATTAA
GATTTATGCGTGTAATCCTAATGTTTACTACTCTATTATTGCCAGGGTTTTATATATCAATTATTTCTTTTCATCATGAA
ATGATACCAATTGAACTTGCATTGTCTATTAGTGCTTCTGATAAGGGTGTACCATTTCCACCCTTTATTGAAGTTATCCT
CTTACTTATAGCCTTTGAAGTTCTTATGGAAGCTGGACTTAGACTGCCTAAGTCAATAGGGCAGGCCGTCTCTATAGTTG
GAGCAATAGTTGTAGGGCAGGCAGCTGTTGAGGCAAAACTTGTTTCTCCAGCTGTTGTTATTACCATTGCTGTTACTGCA
ATGGCAAATTATACAGTGCCAAATCAAGATCTTTCAAATGCTTTAAGATTATGGAGATTTATCATAGCTATTCTGAGTAG
TATATTAGGTTTAATGGGCTTAAGTATAGGAAGCTTAATTCTTCTTTACCACCTATGCAGTATAGAATGTTTTGGAATTC
CTTATCTTTCCCCTTTTGTTTCAGGGAAAAATGAAGACTTCGGAGACACATTATTTAGATTACCTGTATATTTTTTTAAA
AATCGTCCATTAAATTTAAATACTTTATATAGAAAAAGAATAGGTTAA

Upstream 100 bases:

>100_bases
CTTTGCTAGAGAAAATCTTTAATTTTATAAAATAATTTTTAAAAGAATAAATATAGCATATTTAGTAAATAATATTTTCA
AATAAAGGAGGGAAACTCGT

Downstream 100 bases:

>100_bases
AGTGGAAGTGATAATTCATGAAAAAAATATATTTATTTATTTTATTAGTTTTTTCTTTAAGCTTTTCATCCTGTGAAAAT
TACAAGATAGAAAGAAAAGA

Product: spore germination protein KA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 495; Mature: 495

Protein sequence:

>495_residues
MFKKDEKENINDINSKLTIDNLKNILMKSDDVLLREISINKKLKGTLFFIDGLVDSKSISEYIIEPLTQMPRFTESKTEI
EVINLIREGALTYSSQTEKNTLKDVINGILGGNAALLFPGENIAFVFDVKGFDKRNITEPTDENVIKGSRDVFVETLRVN
TATVRRKIKSPNLVFEEIILGKQTQTSISIIYMSNIANEQLLKELKKRLDKINVDAILSLNSIEDYIIDKKLSAFPQLIN
TERPDKFCSNIIEGRIGLIIDGLPISIIIPGTLVQFIQATEDYSQNYIISSILRFMRVILMFTTLLLPGFYISIISFHHE
MIPIELALSISASDKGVPFPPFIEVILLLIAFEVLMEAGLRLPKSIGQAVSIVGAIVVGQAAVEAKLVSPAVVITIAVTA
MANYTVPNQDLSNALRLWRFIIAILSSILGLMGLSIGSLILLYHLCSIECFGIPYLSPFVSGKNEDFGDTLFRLPVYFFK
NRPLNLNTLYRKRIG

Sequences:

>Translated_495_residues
MFKKDEKENINDINSKLTIDNLKNILMKSDDVLLREISINKKLKGTLFFIDGLVDSKSISEYIIEPLTQMPRFTESKTEI
EVINLIREGALTYSSQTEKNTLKDVINGILGGNAALLFPGENIAFVFDVKGFDKRNITEPTDENVIKGSRDVFVETLRVN
TATVRRKIKSPNLVFEEIILGKQTQTSISIIYMSNIANEQLLKELKKRLDKINVDAILSLNSIEDYIIDKKLSAFPQLIN
TERPDKFCSNIIEGRIGLIIDGLPISIIIPGTLVQFIQATEDYSQNYIISSILRFMRVILMFTTLLLPGFYISIISFHHE
MIPIELALSISASDKGVPFPPFIEVILLLIAFEVLMEAGLRLPKSIGQAVSIVGAIVVGQAAVEAKLVSPAVVITIAVTA
MANYTVPNQDLSNALRLWRFIIAILSSILGLMGLSIGSLILLYHLCSIECFGIPYLSPFVSGKNEDFGDTLFRLPVYFFK
NRPLNLNTLYRKRIG
>Mature_495_residues
MFKKDEKENINDINSKLTIDNLKNILMKSDDVLLREISINKKLKGTLFFIDGLVDSKSISEYIIEPLTQMPRFTESKTEI
EVINLIREGALTYSSQTEKNTLKDVINGILGGNAALLFPGENIAFVFDVKGFDKRNITEPTDENVIKGSRDVFVETLRVN
TATVRRKIKSPNLVFEEIILGKQTQTSISIIYMSNIANEQLLKELKKRLDKINVDAILSLNSIEDYIIDKKLSAFPQLIN
TERPDKFCSNIIEGRIGLIIDGLPISIIIPGTLVQFIQATEDYSQNYIISSILRFMRVILMFTTLLLPGFYISIISFHHE
MIPIELALSISASDKGVPFPPFIEVILLLIAFEVLMEAGLRLPKSIGQAVSIVGAIVVGQAAVEAKLVSPAVVITIAVTA
MANYTVPNQDLSNALRLWRFIIAILSSILGLMGLSIGSLILLYHLCSIECFGIPYLSPFVSGKNEDFGDTLFRLPVYFFK
NRPLNLNTLYRKRIG

Specific function: Involved in the germination response to the combination of glucose, fructose, L-asparagine, and KCl [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 55343; Mature: 55343

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKKDEKENINDINSKLTIDNLKNILMKSDDVLLREISINKKLKGTLFFIDGLVDSKSIS
CCCCCCCCCHHHHHCEEEHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEEECCCCCHHHH
EYIIEPLTQMPRFTESKTEIEVINLIREGALTYSSQTEKNTLKDVINGILGGNAALLFPG
HHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECC
ENIAFVFDVKGFDKRNITEPTDENVIKGSRDVFVETLRVNTATVRRKIKSPNLVFEEIIL
CCEEEEEEECCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHC
GKQTQTSISIIYMSNIANEQLLKELKKRLDKINVDAILSLNSIEDYIIDKKLSAFPQLIN
CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCHHHEEEHHHHHHHHHHHHHHHHHHHHC
TERPDKFCSNIIEGRIGLIIDGLPISIIIPGTLVQFIQATEDYSQNYIISSILRFMRVIL
CCCCHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
MFTTLLLPGFYISIISFHHEMIPIELALSISASDKGVPFPPFIEVILLLIAFEVLMEAGL
HHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
RLPKSIGQAVSIVGAIVVGQAAVEAKLVSPAVVITIAVTAMANYTVPNQDLSNALRLWRF
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
IIAILSSILGLMGLSIGSLILLYHLCSIECFGIPYLSPFVSGKNEDFGDTLFRLPVYFFK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHCCCCCCHHHHHHHHHHHHHC
NRPLNLNTLYRKRIG
CCCCCHHHHHHHHCC
>Mature Secondary Structure
MFKKDEKENINDINSKLTIDNLKNILMKSDDVLLREISINKKLKGTLFFIDGLVDSKSIS
CCCCCCCCCHHHHHCEEEHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEEECCCCCHHHH
EYIIEPLTQMPRFTESKTEIEVINLIREGALTYSSQTEKNTLKDVINGILGGNAALLFPG
HHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECC
ENIAFVFDVKGFDKRNITEPTDENVIKGSRDVFVETLRVNTATVRRKIKSPNLVFEEIIL
CCEEEEEEECCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHC
GKQTQTSISIIYMSNIANEQLLKELKKRLDKINVDAILSLNSIEDYIIDKKLSAFPQLIN
CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCHHHEEEHHHHHHHHHHHHHHHHHHHHC
TERPDKFCSNIIEGRIGLIIDGLPISIIIPGTLVQFIQATEDYSQNYIISSILRFMRVIL
CCCCHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
MFTTLLLPGFYISIISFHHEMIPIELALSISASDKGVPFPPFIEVILLLIAFEVLMEAGL
HHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
RLPKSIGQAVSIVGAIVVGQAAVEAKLVSPAVVITIAVTAMANYTVPNQDLSNALRLWRF
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
IIAILSSILGLMGLSIGSLILLYHLCSIECFGIPYLSPFVSGKNEDFGDTLFRLPVYFFK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHCCCCCCHHHHHHHHHHHHHC
NRPLNLNTLYRKRIG
CCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]