| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238920144
Identifier: 238920144
GI number: 238920144
Start: 2160029
End: 2160685
Strand: Reverse
Name: 238920144
Synonym: NT01EI_2250
Alternate gene names: NA
Gene position: 2160685-2160029 (Counterclockwise)
Preceding gene: 238920145
Following gene: 238920136
Centisome position: 56.68
GC content: 34.25
Gene sequence:
>657_bases ATGGAAAATGTAGACACTATATTAAATAAGTATGTTTCAAATCGACATCTTTTTGAACATTTTATGAATGGTGTTGTTGA TACTTTTAGACTAGACCCTAGTTTAAATGATTATCATCACCCTGTCATTCATACTATAAAAAGCAGGTTGAAGGATGTTG ACCATTTAAGAGATAAGATTGAGAGAAAAAATAGCAGTGACGCCCCGATCTCTGAGGAGAATGTATTTTATCGGGTAACT GATCTTGCTGGTGTTCGCATATTACATCTTTATCAAGATCAACTAAAAAATATTCATGAATTAATACAGAAAAAAGTAGA TGATGGTGATTGGTTTTACAGAGAAAGTCCTATCGCGTATTCATGGGATCCTGAAAGTTGTGACTTCTTTACGTCGTTAG GTCTTACGCCAAAAATCAAAGAGTCTTATTATACAAGCATTCATTATGTTATTAAGCCAAAGACTGATTCAAATATTTGT TGTGAGATTCAGGTGAGAACTCTTTTTGAGGAAATTTGGGGTGAGATTGATCATACAATAAATTACCCTCACCCAACTGA GAATTTCGCGTGTAAAGAACAATTGCGAGTGTTATCTAAACTTGTATCAACCGGTACTAGGTTGGCTGACTCTATTTTTA GAGTTAAGGGACAATAG
Upstream 100 bases:
>100_bases CTTTGAGAGGGTCAAAGTCAAAATACATTGCCACCAAGAAAAGCTATGAAGCTTTTACCAAAGATTTGATTGCAAGAATA TCTATGCTCGGTAATTAATT
Downstream 100 bases:
>100_bases TAGTTGATAGGCTGGCTGTTTGTTTTGGCTAGCCTATGTAGTTAGCATCCTCTGGTTAAATAGTTTGGATATTAATTGGT CGGTTTTGATGGCGCTTAGT
Product: hypothetical protein
Products: NA
Alternate protein names: RelA/SpoT Domain-Containing Protein; RelA/SpoT Domain Protein; GTP Pyrophosphokinase-Like Protein; RelA / SpoT Related Protein
Number of amino acids: Translated: 218; Mature: 218
Protein sequence:
>218_residues MENVDTILNKYVSNRHLFEHFMNGVVDTFRLDPSLNDYHHPVIHTIKSRLKDVDHLRDKIERKNSSDAPISEENVFYRVT DLAGVRILHLYQDQLKNIHELIQKKVDDGDWFYRESPIAYSWDPESCDFFTSLGLTPKIKESYYTSIHYVIKPKTDSNIC CEIQVRTLFEEIWGEIDHTINYPHPTENFACKEQLRVLSKLVSTGTRLADSIFRVKGQ
Sequences:
>Translated_218_residues MENVDTILNKYVSNRHLFEHFMNGVVDTFRLDPSLNDYHHPVIHTIKSRLKDVDHLRDKIERKNSSDAPISEENVFYRVT DLAGVRILHLYQDQLKNIHELIQKKVDDGDWFYRESPIAYSWDPESCDFFTSLGLTPKIKESYYTSIHYVIKPKTDSNIC CEIQVRTLFEEIWGEIDHTINYPHPTENFACKEQLRVLSKLVSTGTRLADSIFRVKGQ >Mature_218_residues MENVDTILNKYVSNRHLFEHFMNGVVDTFRLDPSLNDYHHPVIHTIKSRLKDVDHLRDKIERKNSSDAPISEENVFYRVT DLAGVRILHLYQDQLKNIHELIQKKVDDGDWFYRESPIAYSWDPESCDFFTSLGLTPKIKESYYTSIHYVIKPKTDSNIC CEIQVRTLFEEIWGEIDHTINYPHPTENFACKEQLRVLSKLVSTGTRLADSIFRVKGQ
Specific function: Unknown
COG id: COG2357
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25590; Mature: 25590
Theoretical pI: Translated: 6.43; Mature: 6.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENVDTILNKYVSNRHLFEHFMNGVVDTFRLDPSLNDYHHPVIHTIKSRLKDVDHLRDKI CCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH ERKNSSDAPISEENVFYRVTDLAGVRILHLYQDQLKNIHELIQKKVDDGDWFYRESPIAY HHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCEEE SWDPESCDFFTSLGLTPKIKESYYTSIHYVIKPKTDSNICCEIQVRTLFEEIWGEIDHTI CCCCCCCHHHHHCCCCHHHHHHHHCEEEEEEECCCCCCCEEEEHHHHHHHHHHHHHHCCC NYPHPTENFACKEQLRVLSKLVSTGTRLADSIFRVKGQ CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MENVDTILNKYVSNRHLFEHFMNGVVDTFRLDPSLNDYHHPVIHTIKSRLKDVDHLRDKI CCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH ERKNSSDAPISEENVFYRVTDLAGVRILHLYQDQLKNIHELIQKKVDDGDWFYRESPIAY HHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCEEE SWDPESCDFFTSLGLTPKIKESYYTSIHYVIKPKTDSNICCEIQVRTLFEEIWGEIDHTI CCCCCCCHHHHHCCCCHHHHHHHHCEEEEEEECCCCCCCEEEEHHHHHHHHHHHHHHCCC NYPHPTENFACKEQLRVLSKLVSTGTRLADSIFRVKGQ CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA