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The map label for this gene is fimD [H]

Identifier: 238027860

GI number: 238027860

Start: 2501435

End: 2503852

Strand: Direct

Name: fimD [H]

Synonym: bglu_1g22910

Alternate gene names: 238027860

Gene position: 2501435-2503852 (Clockwise)

Preceding gene: 238027859

Following gene: 238027861

Centisome position: 64.03

GC content: 68.73

Gene sequence:

>2418_bases
GTGTTGCTGTTCGCCACCGCCGGCACGGCCAGAAGCGGCGACGCACTGCGTTTCAACAACGACTTCCTGACGCTGGACGG
TGTGGCACTACCAGTCGATCTCGATTACTTCGCAAAGGAAAACAGCGTGTTGCCAGGCCGCCACCCTACCCTCATGACGT
TCAATCGCGAGCCAACCGGATTGCAAATGGTCCGCTTCGTCGCGAGCGGCGACCAGTACGAGCACGTCGTCCCCTGTATT
ACAGGGGCGATGCTCGACGACTGGGGGGTCGACACGGCTCGGCTGCCCGCCAGCGCTGACAGCTGCATCGACCTCGAATC
GGCGATTCCGGGCGCGACCGTGCGCTACCAGGCACACAATCAGTCGCTGTTCGTGACGGTGCCGCAAACCGCGCTGCTCC
ACCACGCGGCGGGCGCCGTCGATCCGCGCCTGTGGAACTACGGCGAAACCGCGGCCGTGGCGAACTACGACGTCAGCGTC
AACCACGATGCCATCCAGGGCGACACCGGCGCGACGCTGAACCTCGACACGGCCGTCAACGCAGGCCGCTGGCTATTGCG
CAATCGCAACTACGCGAACCTCGATCGTGGCCGGACCACCTGGCAGCCGGCCGAGTTTTCGCTGTCGACGCCGCTCGCGC
GGCTCGGCGGCAGCTTGACGGCCGGCGACACGTCGTCGCCGAGCGACCTGTTCGACAGTTTCCGGTTTCGCGGCGTCACG
CTGCAGTCGGACGACGGCATGGTGCCGGACAGCCTGCAGGGGTATGCGCCCGTGATTCGCGGCGTCGCCACCAGCGAATC
GCGGGTCACGATCCGCCAGAACGGCGGCACGGTCTACGACAAGTACGTGCCGCCCGGCCCGTATGCGATCGACGATCTCG
GCGGCGCGGCGGCAGGCGCCGATCTCGACGTGACGATCACCGACGCGGCCGGCAGGGTCACGCACTACCGTCAGCCCTAC
AACACGCTGCCGATCATGCTGCGCCAGGGCCGCATGCGCTACCGCATCGCGGCCGGCACCTACGACGGCTACGGCGACCG
TCATCACGACCCGTTCGTCTGGGCCGAGGCCGAGCGCGGCATGGGCAACCGGATCACGCTGTTCGGCGGCATGATCCAGG
CATCCCGCTACACGGCCCGCAGCCTCGGCGCGGGCCTCGATCTGGGCCGCGCCGGCGCGGTCTCGGTCGACCTCGTGCGC
GCCGCGGCCGCGTTGACGGGCAACCTGCCGTCGATCGCGTACCGGCTGCGCTACGCGAACTCGATCACGCGCCTGCGCTT
CAATGCGAATGCCACGTTGCGCCGCTACACGAACGCGGCGTTCCTGAATTTCGACGATGCGATGGGCAACACGCTGCAGG
CCTCCGCCGAGCACGGGGTGCGTTCGCACGAGCAGCTCACCGTCAACCAGGGGCTCGGCGGCGCCCTCGCGATGTATGCC
TCATACGACCATCGCACGTATTTCGGCGGCCGGCCCTCGGACCGCATCCTGCAGATCGGCCTGAGCGGTTCGTACCGCGC
GGCGAGCTACACCCTGAGCGTCGGCAACATCCGCCAGCGCGGCCGCGACGTGAGCCACTATCTGCTCCTCACGCTGAGCC
TGCCGCTCGGCCGCGCGGCCAACGTCAGCTATTCGGGCAACTACGACCGGCGGGCGGGCATGTCGCAGCAGGCCAGCGTG
TTCGGTTCGCTGTTGCGCGACGGGCGGCTCAGCTACACCGCCAATGCGTCGCGCACGCGTAACGACAGCAGCTTTTACGC
GTCCACCACCTACGCCGGCGCCAAGGGCATGGTCGCGCTGTCGCAGACCTTCATGCAGCGCGCCGCGCGTACCGTGGCCG
AGGTCAAGGGCGGCATCGTCGGCGATGCGCGCGGCGTGCTGCTCTCGCAGCACGTCGACGAAACCTCCGCCATCGTCGAT
GCGCCCGGCCTGCGCGGCGCGCTCGTCAACGGCAACCCCGGGATTCGCACCAATCGCGACGGCCGCGCGGTGGTGACCGG
CCTGATGCCGTACCGGCGCAACCGAATCCGGCTCGACGAACCCCAGGGCCGCGACGATGACGACAACCAGGCCACGCTGC
TGCAATCGATCGCCACCACGGTCCCCACGCGCGGCGCGATCACGCGGCTGCACTTCCAGACCGCGATCGGCTGGCGATCC
TTGAACACCCTGCTCGACACGCAAGGCAAGCCGCTGCCGTTCGGGGCCATGATCCGCGACGCTCGGCACCATGTGGTCAG
CGTGGTGGGGCCGCTCGGGCGCGTCTGGCTGACCGGCCTGCGCGACGAGAACGACTTTATCGCGACGCTCGGCGACGCGC
GTCACACGCTGTGCCGGTTCCGGATCACGCGCCAAGAACGCAACCAGCCGCTCACCTGCCAGCCGGCCCGCTCGCTTGCG
GCCCGCCACGCGCCATGA

Upstream 100 bases:

>100_bases
GTCCGAATCCAATCGATCAACGACTACGGCGGCATCAGCGCGCCCTTCACGCCGCCGCTCGACGGCCCGGTGTCCACGCC
GCACTAGGCTCGCGCTCGCC

Downstream 100 bases:

>100_bases
TCCACCGCGGCCGGCACCTCTGTCTGCTGATCCTGCTGCTGGGCCTCGCTCCGGCCGTCCACGCGGGCTGCACGCGCAAC
CCCGACTGGGGCGGCACGCG

Product: putative fimbrial usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 805; Mature: 805

Protein sequence:

>805_residues
MLLFATAGTARSGDALRFNNDFLTLDGVALPVDLDYFAKENSVLPGRHPTLMTFNREPTGLQMVRFVASGDQYEHVVPCI
TGAMLDDWGVDTARLPASADSCIDLESAIPGATVRYQAHNQSLFVTVPQTALLHHAAGAVDPRLWNYGETAAVANYDVSV
NHDAIQGDTGATLNLDTAVNAGRWLLRNRNYANLDRGRTTWQPAEFSLSTPLARLGGSLTAGDTSSPSDLFDSFRFRGVT
LQSDDGMVPDSLQGYAPVIRGVATSESRVTIRQNGGTVYDKYVPPGPYAIDDLGGAAAGADLDVTITDAAGRVTHYRQPY
NTLPIMLRQGRMRYRIAAGTYDGYGDRHHDPFVWAEAERGMGNRITLFGGMIQASRYTARSLGAGLDLGRAGAVSVDLVR
AAAALTGNLPSIAYRLRYANSITRLRFNANATLRRYTNAAFLNFDDAMGNTLQASAEHGVRSHEQLTVNQGLGGALAMYA
SYDHRTYFGGRPSDRILQIGLSGSYRAASYTLSVGNIRQRGRDVSHYLLLTLSLPLGRAANVSYSGNYDRRAGMSQQASV
FGSLLRDGRLSYTANASRTRNDSSFYASTTYAGAKGMVALSQTFMQRAARTVAEVKGGIVGDARGVLLSQHVDETSAIVD
APGLRGALVNGNPGIRTNRDGRAVVTGLMPYRRNRIRLDEPQGRDDDDNQATLLQSIATTVPTRGAITRLHFQTAIGWRS
LNTLLDTQGKPLPFGAMIRDARHHVVSVVGPLGRVWLTGLRDENDFIATLGDARHTLCRFRITRQERNQPLTCQPARSLA
ARHAP

Sequences:

>Translated_805_residues
MLLFATAGTARSGDALRFNNDFLTLDGVALPVDLDYFAKENSVLPGRHPTLMTFNREPTGLQMVRFVASGDQYEHVVPCI
TGAMLDDWGVDTARLPASADSCIDLESAIPGATVRYQAHNQSLFVTVPQTALLHHAAGAVDPRLWNYGETAAVANYDVSV
NHDAIQGDTGATLNLDTAVNAGRWLLRNRNYANLDRGRTTWQPAEFSLSTPLARLGGSLTAGDTSSPSDLFDSFRFRGVT
LQSDDGMVPDSLQGYAPVIRGVATSESRVTIRQNGGTVYDKYVPPGPYAIDDLGGAAAGADLDVTITDAAGRVTHYRQPY
NTLPIMLRQGRMRYRIAAGTYDGYGDRHHDPFVWAEAERGMGNRITLFGGMIQASRYTARSLGAGLDLGRAGAVSVDLVR
AAAALTGNLPSIAYRLRYANSITRLRFNANATLRRYTNAAFLNFDDAMGNTLQASAEHGVRSHEQLTVNQGLGGALAMYA
SYDHRTYFGGRPSDRILQIGLSGSYRAASYTLSVGNIRQRGRDVSHYLLLTLSLPLGRAANVSYSGNYDRRAGMSQQASV
FGSLLRDGRLSYTANASRTRNDSSFYASTTYAGAKGMVALSQTFMQRAARTVAEVKGGIVGDARGVLLSQHVDETSAIVD
APGLRGALVNGNPGIRTNRDGRAVVTGLMPYRRNRIRLDEPQGRDDDDNQATLLQSIATTVPTRGAITRLHFQTAIGWRS
LNTLLDTQGKPLPFGAMIRDARHHVVSVVGPLGRVWLTGLRDENDFIATLGDARHTLCRFRITRQERNQPLTCQPARSLA
ARHAP
>Mature_805_residues
MLLFATAGTARSGDALRFNNDFLTLDGVALPVDLDYFAKENSVLPGRHPTLMTFNREPTGLQMVRFVASGDQYEHVVPCI
TGAMLDDWGVDTARLPASADSCIDLESAIPGATVRYQAHNQSLFVTVPQTALLHHAAGAVDPRLWNYGETAAVANYDVSV
NHDAIQGDTGATLNLDTAVNAGRWLLRNRNYANLDRGRTTWQPAEFSLSTPLARLGGSLTAGDTSSPSDLFDSFRFRGVT
LQSDDGMVPDSLQGYAPVIRGVATSESRVTIRQNGGTVYDKYVPPGPYAIDDLGGAAAGADLDVTITDAAGRVTHYRQPY
NTLPIMLRQGRMRYRIAAGTYDGYGDRHHDPFVWAEAERGMGNRITLFGGMIQASRYTARSLGAGLDLGRAGAVSVDLVR
AAAALTGNLPSIAYRLRYANSITRLRFNANATLRRYTNAAFLNFDDAMGNTLQASAEHGVRSHEQLTVNQGLGGALAMYA
SYDHRTYFGGRPSDRILQIGLSGSYRAASYTLSVGNIRQRGRDVSHYLLLTLSLPLGRAANVSYSGNYDRRAGMSQQASV
FGSLLRDGRLSYTANASRTRNDSSFYASTTYAGAKGMVALSQTFMQRAARTVAEVKGGIVGDARGVLLSQHVDETSAIVD
APGLRGALVNGNPGIRTNRDGRAVVTGLMPYRRNRIRLDEPQGRDDDDNQATLLQSIATTVPTRGAITRLHFQTAIGWRS
LNTLLDTQGKPLPFGAMIRDARHHVVSVVGPLGRVWLTGLRDENDFIATLGDARHTLCRFRITRQERNQPLTCQPARSLA
ARHAP

Specific function: Involved in the export and assembly of fimA fimbrial subunits across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1790772, Length=846, Percent_Identity=32.2695035460993, Blast_Score=371, Evalue=1e-104,
Organism=Escherichia coli, GI1786744, Length=831, Percent_Identity=30.806257521059, Blast_Score=341, Evalue=1e-94,
Organism=Escherichia coli, GI1789533, Length=768, Percent_Identity=31.5104166666667, Blast_Score=340, Evalue=2e-94,
Organism=Escherichia coli, GI1787172, Length=824, Percent_Identity=29.6116504854369, Blast_Score=318, Evalue=9e-88,
Organism=Escherichia coli, GI1788427, Length=759, Percent_Identity=29.2490118577075, Blast_Score=268, Evalue=7e-73,
Organism=Escherichia coli, GI1786332, Length=852, Percent_Identity=26.8779342723005, Blast_Score=248, Evalue=1e-66,
Organism=Escherichia coli, GI87081778, Length=772, Percent_Identity=25.7772020725389, Blast_Score=205, Evalue=9e-54,
Organism=Escherichia coli, GI1789610, Length=785, Percent_Identity=22.9299363057325, Blast_Score=111, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 87263; Mature: 87263

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLFATAGTARSGDALRFNNDFLTLDGVALPVDLDYFAKENSVLPGRHPTLMTFNREPTG
CEEEEECCCCCCCCEEEECCCEEEECCEEEEECHHHHCCCCCCCCCCCCEEEEECCCCCH
LQMVRFVASGDQYEHVVPCITGAMLDDWGVDTARLPASADSCIDLESAIPGATVRYQAHN
HHHHHHHHCCCCCCCHHHHHHCCHHHCCCCCCEECCCCCCCCEEHHHCCCCCEEEEEECC
QSLFVTVPQTALLHHAAGAVDPRLWNYGETAAVANYDVSVNHDAIQGDTGATLNLDTAVN
CEEEEECCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEECCCCC
AGRWLLRNRNYANLDRGRTTWQPAEFSLSTPLARLGGSLTAGDTSSPSDLFDSFRFRGVT
CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCEECCCCCCHHHHHHHHHEEEEE
LQSDDGMVPDSLQGYAPVIRGVATSESRVTIRQNGGTVYDKYVPPGPYAIDDLGGAAAGA
EECCCCCCCCCCCCHHHHHHCCCCCCCEEEEEECCCEEEECCCCCCCCEECCCCCCCCCC
DLDVTITDAAGRVTHYRQPYNTLPIMLRQGRMRYRIAAGTYDGYGDRHHDPFVWAEAERG
CEEEEEECCCCCCCCCCCCCCCHHHHEECCCEEEEEEECCCCCCCCCCCCCEEEEECCCC
MGNRITLFGGMIQASRYTARSLGAGLDLGRAGAVSVDLVRAAAALTGNLPSIAYRLRYAN
CCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHC
SITRLRFNANATLRRYTNAAFLNFDDAMGNTLQASAEHGVRSHEQLTVNQGLGGALAMYA
CEEEEEECCCCEEEEECCEEEEEEHHHCCCCEEHHHHCCCCCCCEEEECCCCCCEEEEEE
SYDHRTYFGGRPSDRILQIGLSGSYRAASYTLSVGNIRQRGRDVSHYLLLTLSLPLGRAA
ECCCCEECCCCCCCEEEEEECCCCCEEEEEEEEEHHHHHCCCCCCEEEEEEEECCCCCCC
NVSYSGNYDRRAGMSQQASVFGSLLRDGRLSYTANASRTRNDSSFYASTTYAGAKGMVAL
CCEECCCCHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCCHHHH
SQTFMQRAARTVAEVKGGIVGDARGVLLSQHVDETSAIVDAPGLRGALVNGNPGIRTNRD
HHHHHHHHHHHHHHHCCCEEECCCCEEEHHCCCCHHHEEECCCCCEEEECCCCCCCCCCC
GRAVVTGLMPYRRNRIRLDEPQGRDDDDNQATLLQSIATTVPTRGAITRLHFQTAIGWRS
CCEEEEECCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEHHHHCHHH
LNTLLDTQGKPLPFGAMIRDARHHVVSVVGPLGRVWLTGLRDENDFIATLGDARHTLCRF
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHEECCCCCCCEEEEECHHHHHHHHE
RITRQERNQPLTCQPARSLAARHAP
EEEHHHCCCCCCCCHHHHHHHCCCC
>Mature Secondary Structure
MLLFATAGTARSGDALRFNNDFLTLDGVALPVDLDYFAKENSVLPGRHPTLMTFNREPTG
CEEEEECCCCCCCCEEEECCCEEEECCEEEEECHHHHCCCCCCCCCCCCEEEEECCCCCH
LQMVRFVASGDQYEHVVPCITGAMLDDWGVDTARLPASADSCIDLESAIPGATVRYQAHN
HHHHHHHHCCCCCCCHHHHHHCCHHHCCCCCCEECCCCCCCCEEHHHCCCCCEEEEEECC
QSLFVTVPQTALLHHAAGAVDPRLWNYGETAAVANYDVSVNHDAIQGDTGATLNLDTAVN
CEEEEECCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEECCCCC
AGRWLLRNRNYANLDRGRTTWQPAEFSLSTPLARLGGSLTAGDTSSPSDLFDSFRFRGVT
CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCEECCCCCCHHHHHHHHHEEEEE
LQSDDGMVPDSLQGYAPVIRGVATSESRVTIRQNGGTVYDKYVPPGPYAIDDLGGAAAGA
EECCCCCCCCCCCCHHHHHHCCCCCCCEEEEEECCCEEEECCCCCCCCEECCCCCCCCCC
DLDVTITDAAGRVTHYRQPYNTLPIMLRQGRMRYRIAAGTYDGYGDRHHDPFVWAEAERG
CEEEEEECCCCCCCCCCCCCCCHHHHEECCCEEEEEEECCCCCCCCCCCCCEEEEECCCC
MGNRITLFGGMIQASRYTARSLGAGLDLGRAGAVSVDLVRAAAALTGNLPSIAYRLRYAN
CCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHC
SITRLRFNANATLRRYTNAAFLNFDDAMGNTLQASAEHGVRSHEQLTVNQGLGGALAMYA
CEEEEEECCCCEEEEECCEEEEEEHHHCCCCEEHHHHCCCCCCCEEEECCCCCCEEEEEE
SYDHRTYFGGRPSDRILQIGLSGSYRAASYTLSVGNIRQRGRDVSHYLLLTLSLPLGRAA
ECCCCEECCCCCCCEEEEEECCCCCEEEEEEEEEHHHHHCCCCCCEEEEEEEECCCCCCC
NVSYSGNYDRRAGMSQQASVFGSLLRDGRLSYTANASRTRNDSSFYASTTYAGAKGMVAL
CCEECCCCHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCCHHHH
SQTFMQRAARTVAEVKGGIVGDARGVLLSQHVDETSAIVDAPGLRGALVNGNPGIRTNRD
HHHHHHHHHHHHHHHCCCEEECCCCEEEHHCCCCHHHEEECCCCCEEEECCCCCCCCCCC
GRAVVTGLMPYRRNRIRLDEPQGRDDDDNQATLLQSIATTVPTRGAITRLHFQTAIGWRS
CCEEEEECCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEHHHHCHHH
LNTLLDTQGKPLPFGAMIRDARHHVVSVVGPLGRVWLTGLRDENDFIATLGDARHTLCRF
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHEECCCCCCCEEEEECHHHHHHHHE
RITRQERNQPLTCQPARSLAARHAP
EEEHHHCCCCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1970114; 7610040; 9278503 [H]