| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is iolC1 [H]
Identifier: 238027780
GI number: 238027780
Start: 2401255
End: 2403231
Strand: Direct
Name: iolC1 [H]
Synonym: bglu_1g22040
Alternate gene names: 238027780
Gene position: 2401255-2403231 (Clockwise)
Preceding gene: 238027779
Following gene: 238027781
Centisome position: 61.47
GC content: 72.38
Gene sequence:
>1977_bases ATGTCCCATTCCCCCCTCACGTTCGCGCCGGACCGCCCGCTCGACCTGATCTGCATCGGCCGCGTGGCGGTCGACCTGTA CGCCGAGCAGATCGGCGCGCGCCTGGAAGACGCGACCAGCTTCGCGAAGTACCTGGGCGGCTCGTCCGGCAACATCGCGT TCGGCGCGGCGCGGCTCGGGCTCAAGTCCGCGATGCTCGCGCGCGTCGGCAACGATCACATGGGCCGCTTCGTGCGCGAG ACGCTCGCGCGCGAAGGCTGCGACACGCGCCGCCTCATCACCGACGAGGAGCGCCTGACCGCGCTGGTGCTGCTCGGCCT CAAGGATCGCGACACGTTTCCGCTGGTGTTCTACCGCGAGAACTGCGCCGACATGGCGCTCGACGAGACCGACATCGACG AGGCGTTCATCGCCTCGGCCAAGGCGCTGCTGATCACCGGCACCCACTTCTCGACCGAGCGCGTCAACCGCGCGAGCCGC CGTGCGCTCGACTTCGCGCGCCGCCACCAGGTGCGCACCGTGCTCGACATCGACTACCGGCCCGTGCTCTGGGGGCTGAC CGGCAAGGCCGACGGCGAGACCCGCTTCGTTGCCGACGCGGGCGTGACGGCGCACCTGCAGCGCATCCTGCCGCTGTTCG ACCTGGTGATCGGCACCGAGGAGGAATTCCGCATCGCGGGCGGCAAGGACGCGCTGCCCGATGCGCTGGAGATGGTGCGC CGCGTGACGAGCGCGACCCTGGTGGTCAAGCGCGGCCCGCTCGGCTGCTCGATCATCGAGGGCGCGGTGCCGAACACGCT CGACGCGCTCGAGCTGGTGGGCGGCGTGGAGGTGGACGTGCTCAACGTGCTCGGCGCCGGCGACGCGTTCGCCTCGGGCC TGCTCTCGCAGTGGCTGCGCGGCGCCCCGCTGGAGGCCGCCGCGCGTATCGCGAACGCCTGCGGGGCGCTGGTGGTGTCG CGCCACGGCTGCTCGCCGGCAATGCCGACGCCGGCCGAACTCGAGCATTTCCTGCGCGAGGCCGAGCGCGATCCGCTGCG CATGCGCCGCCCCGACCGCGACGCGACGCTCGCGCGGCTGCACCGCGTGAGCCCGCCGCGGCGCGCGTGGGAGCAGGTGC TCGGCTTCGCCTTCGACCACCGCAACCAGTTCTTCGAACTCGCGCAGCAGACCGGCGCGCCGATCGAGCGGATCGATCAC CTCAAGCGCCTGTTCGTCGAGGCCGTCGCGCAGACCGAGGCGCAGCTCGGGCTGCAAGGCCGGATCGGCGTGCTGATCGA CGATCGCTACGGCCAGGACGCGCTCAACGAGGCGACCGGCCGCGGCTGGTGGATCGGCCGGCCGGTGGAGCTGCCCGGCT CGCTGCCGCTCGAATTCGACCACGGCCGCTCGCTCGGCACCACGCTCGAGACCTGGCCCGCCGAGCACGTCGCGAAGTGC CTGGTGCGCTATCACCCCGACGAGGCCTTCCAGACGCGGCTCGAACAGGAAACGCAGCTGCGCACGCTGTACGACGCGGT GCAGGCGAGCGGCCACGAGCTGCTGCTCGAGGTGATCCCGCCGCATCGCCCGGACCTGCCCGCCGGCGCCGACATCGTCT ATCGCGCGCTCAAGCGGCTCTACAACCTCGGCATCCGGCCGGAATGGTGGAAGCTCGAACCGCTCGACGCGAGCCAGTGG CGCATGGTGGACGAGCTGATCGCCGAGCGCGATCCGTATTGCCGCGGCGTGGTGCTGCTGGGCCTGTCGGCACCGGCCGA GCAGCTGATCGACGGCTTCACCGCCGCGGCCGCCTCGCGCACCTGCCGCGGCTTCACGGTGGGCCGCACCATCTTCCACG AGCCCAGCCGCGCCTGGCTGGCCGGCGAGCTCGACGACGCCGGCCTGATCGCGCGCGTGCGCGCCACCTTCGAGACGCTG ATCGACGCCTGGCGCACGGCGCGCGCCGGCCGCGTCGCCGCGCGCCGGGTCGCATGA
Upstream 100 bases:
>100_bases GAAGGACGAGGTGCTCGACATGATGGCGGGCGGCGCGGAAATGCAGAAGATGGTCGCCGAGCTAGACGGCGCGGTGCTCT AACTCCCGACAGGAACCGAC
Downstream 100 bases:
>100_bases GGAGCCCCCCGATGAACCATCGACAGATCGAAGCCGGCCTCGCGCCGGCCGGTGCCGCGACGGGCGGCACCGTGCGCCTG ACCACCGCGCAGGCGCTGGT
Product: IolC protein
Products: NA
Alternate protein names: 2-deoxy-5-keto-D-gluconate kinase 1; DKG kinase 1 [H]
Number of amino acids: Translated: 658; Mature: 657
Protein sequence:
>658_residues MSHSPLTFAPDRPLDLICIGRVAVDLYAEQIGARLEDATSFAKYLGGSSGNIAFGAARLGLKSAMLARVGNDHMGRFVRE TLAREGCDTRRLITDEERLTALVLLGLKDRDTFPLVFYRENCADMALDETDIDEAFIASAKALLITGTHFSTERVNRASR RALDFARRHQVRTVLDIDYRPVLWGLTGKADGETRFVADAGVTAHLQRILPLFDLVIGTEEEFRIAGGKDALPDALEMVR RVTSATLVVKRGPLGCSIIEGAVPNTLDALELVGGVEVDVLNVLGAGDAFASGLLSQWLRGAPLEAAARIANACGALVVS RHGCSPAMPTPAELEHFLREAERDPLRMRRPDRDATLARLHRVSPPRRAWEQVLGFAFDHRNQFFELAQQTGAPIERIDH LKRLFVEAVAQTEAQLGLQGRIGVLIDDRYGQDALNEATGRGWWIGRPVELPGSLPLEFDHGRSLGTTLETWPAEHVAKC LVRYHPDEAFQTRLEQETQLRTLYDAVQASGHELLLEVIPPHRPDLPAGADIVYRALKRLYNLGIRPEWWKLEPLDASQW RMVDELIAERDPYCRGVVLLGLSAPAEQLIDGFTAAAASRTCRGFTVGRTIFHEPSRAWLAGELDDAGLIARVRATFETL IDAWRTARAGRVAARRVA
Sequences:
>Translated_658_residues MSHSPLTFAPDRPLDLICIGRVAVDLYAEQIGARLEDATSFAKYLGGSSGNIAFGAARLGLKSAMLARVGNDHMGRFVRE TLAREGCDTRRLITDEERLTALVLLGLKDRDTFPLVFYRENCADMALDETDIDEAFIASAKALLITGTHFSTERVNRASR RALDFARRHQVRTVLDIDYRPVLWGLTGKADGETRFVADAGVTAHLQRILPLFDLVIGTEEEFRIAGGKDALPDALEMVR RVTSATLVVKRGPLGCSIIEGAVPNTLDALELVGGVEVDVLNVLGAGDAFASGLLSQWLRGAPLEAAARIANACGALVVS RHGCSPAMPTPAELEHFLREAERDPLRMRRPDRDATLARLHRVSPPRRAWEQVLGFAFDHRNQFFELAQQTGAPIERIDH LKRLFVEAVAQTEAQLGLQGRIGVLIDDRYGQDALNEATGRGWWIGRPVELPGSLPLEFDHGRSLGTTLETWPAEHVAKC LVRYHPDEAFQTRLEQETQLRTLYDAVQASGHELLLEVIPPHRPDLPAGADIVYRALKRLYNLGIRPEWWKLEPLDASQW RMVDELIAERDPYCRGVVLLGLSAPAEQLIDGFTAAAASRTCRGFTVGRTIFHEPSRAWLAGELDDAGLIARVRATFETL IDAWRTARAGRVAARRVA >Mature_657_residues SHSPLTFAPDRPLDLICIGRVAVDLYAEQIGARLEDATSFAKYLGGSSGNIAFGAARLGLKSAMLARVGNDHMGRFVRET LAREGCDTRRLITDEERLTALVLLGLKDRDTFPLVFYRENCADMALDETDIDEAFIASAKALLITGTHFSTERVNRASRR ALDFARRHQVRTVLDIDYRPVLWGLTGKADGETRFVADAGVTAHLQRILPLFDLVIGTEEEFRIAGGKDALPDALEMVRR VTSATLVVKRGPLGCSIIEGAVPNTLDALELVGGVEVDVLNVLGAGDAFASGLLSQWLRGAPLEAAARIANACGALVVSR HGCSPAMPTPAELEHFLREAERDPLRMRRPDRDATLARLHRVSPPRRAWEQVLGFAFDHRNQFFELAQQTGAPIERIDHL KRLFVEAVAQTEAQLGLQGRIGVLIDDRYGQDALNEATGRGWWIGRPVELPGSLPLEFDHGRSLGTTLETWPAEHVAKCL VRYHPDEAFQTRLEQETQLRTLYDAVQASGHELLLEVIPPHRPDLPAGADIVYRALKRLYNLGIRPEWWKLEPLDASQWR MVDELIAERDPYCRGVVLLGLSAPAEQLIDGFTAAAASRTCRGFTVGRTIFHEPSRAWLAGELDDAGLIARVRATFETLI DAWRTARAGRVAARRVA
Specific function: Catalyzes the phosphorylation of 5-dehydro-2-deoxy-D- gluconate (2-deoxy-5-keto-D-gluconate or DKG) to 6-phospho-5- dehydro-2-deoxy-D-gluconate (DKGP) [H]
COG id: COG0524
COG function: function code G; Sugar kinases, ribokinase family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the carbohydrate kinase pfkB family [H]
Homologues:
Organism=Escherichia coli, GI87081971, Length=334, Percent_Identity=26.6467065868263, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17532905, Length=285, Percent_Identity=26.3157894736842, Blast_Score=73, Evalue=6e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011611 - InterPro: IPR002173 - InterPro: IPR022841 [H]
Pfam domain/function: PF00294 PfkB [H]
EC number: =2.7.1.92 [H]
Molecular weight: Translated: 72673; Mature: 72542
Theoretical pI: Translated: 6.32; Mature: 6.32
Prosite motif: PS00584 PFKB_KINASES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHSPLTFAPDRPLDLICIGRVAVDLYAEQIGARLEDATSFAKYLGGSSGNIAFGAARLG CCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEHHHHHH LKSAMLARVGNDHMGRFVRETLAREGCDTRRLITDEERLTALVLLGLKDRDTFPLVFYRE HHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHEEEEEEECCCCCCCCEEEEEC NCADMALDETDIDEAFIASAKALLITGTHFSTERVNRASRRALDFARRHQVRTVLDIDYR CCHHHCCCCCCCHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCC PVLWGLTGKADGETRFVADAGVTAHLQRILPLFDLVIGTEEEFRIAGGKDALPDALEMVR CEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHEEECCCCCCCHHHHHHHH RVTSATLVVKRGPLGCSIIEGAVPNTLDALELVGGVEVDVLNVLGAGDAFASGLLSQWLR HHHHHEEEEECCCCCCHHHCCCCCCHHHHHHHHCCCCEEHHHHHCCCHHHHHHHHHHHHC GAPLEAAARIANACGALVVSRHGCSPAMPTPAELEHFLREAERDPLRMRRPDRDATLARL CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHCCCCCCHHHHHHH HRVSPPRRAWEQVLGFAFDHRNQFFELAQQTGAPIERIDHLKRLFVEAVAQTEAQLGLQG HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC RIGVLIDDRYGQDALNEATGRGWWIGRPVELPGSLPLEFDHGRSLGTTLETWPAEHVAKC CEEEEEECCCCCHHHHHCCCCCEECCCCCCCCCCCCCEECCCCCCCCCHHHCCHHHHHHH LVRYHPDEAFQTRLEQETQLRTLYDAVQASGHELLLEVIPPHRPDLPAGADIVYRALKRL HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHH YNLGIRPEWWKLEPLDASQWRMVDELIAERDPYCRGVVLLGLSAPAEQLIDGFTAAAASR HHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH TCRGFTVGRTIFHEPSRAWLAGELDDAGLIARVRATFETLIDAWRTARAGRVAARRVA CCCCEECCHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SHSPLTFAPDRPLDLICIGRVAVDLYAEQIGARLEDATSFAKYLGGSSGNIAFGAARLG CCCCCCCCCCCCCCEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEHHHHHH LKSAMLARVGNDHMGRFVRETLAREGCDTRRLITDEERLTALVLLGLKDRDTFPLVFYRE HHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHEEEEEEECCCCCCCCEEEEEC NCADMALDETDIDEAFIASAKALLITGTHFSTERVNRASRRALDFARRHQVRTVLDIDYR CCHHHCCCCCCCHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCC PVLWGLTGKADGETRFVADAGVTAHLQRILPLFDLVIGTEEEFRIAGGKDALPDALEMVR CEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCHHEEECCCCCCCHHHHHHHH RVTSATLVVKRGPLGCSIIEGAVPNTLDALELVGGVEVDVLNVLGAGDAFASGLLSQWLR HHHHHEEEEECCCCCCHHHCCCCCCHHHHHHHHCCCCEEHHHHHCCCHHHHHHHHHHHHC GAPLEAAARIANACGALVVSRHGCSPAMPTPAELEHFLREAERDPLRMRRPDRDATLARL CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHCCCCCCHHHHHHH HRVSPPRRAWEQVLGFAFDHRNQFFELAQQTGAPIERIDHLKRLFVEAVAQTEAQLGLQG HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC RIGVLIDDRYGQDALNEATGRGWWIGRPVELPGSLPLEFDHGRSLGTTLETWPAEHVAKC CEEEEEECCCCCHHHHHCCCCCEECCCCCCCCCCCCCEECCCCCCCCCHHHCCHHHHHHH LVRYHPDEAFQTRLEQETQLRTLYDAVQASGHELLLEVIPPHRPDLPAGADIVYRALKRL HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHH YNLGIRPEWWKLEPLDASQWRMVDELIAERDPYCRGVVLLGLSAPAEQLIDGFTAAAASR HHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH TCRGFTVGRTIFHEPSRAWLAGELDDAGLIARVRATFETLIDAWRTARAGRVAARRVA CCCCEECCHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA