| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is ytfR [C]
Identifier: 238027779
GI number: 238027779
Start: 2400412
End: 2401236
Strand: Direct
Name: ytfR [C]
Synonym: bglu_1g22030
Alternate gene names: 238027779
Gene position: 2400412-2401236 (Clockwise)
Preceding gene: 238027778
Following gene: 238027780
Centisome position: 61.45
GC content: 68.0
Gene sequence:
>825_bases ATGTCCACGCCTTCCTCTTCCGCCTCCCCGTCCGGCGTCGCCGCCGACACGATCCTCGAGCTCGACGGCGTCAGCAAGTT CTTCGGCAAGGTCATCGCGCTGTCCGGCATCAACCTGCGGCTGCGCCGCGGCGAGGTGCATTGCCTGCTCGGCGACAACG GCGCCGGCAAGTCCACGCTGATCAAGACGCTGGCCGGCGTGCATCAGCCCTCGGAGGGCCGCTATCTGGTGGACGGCCGG CCGGTGGCGTTCACCTCGCCGAAGGACGCGCTCGACCTCGGCATCGCCACCGTCTACCAGGATCTCGCGCTGGTGCCGCT GCTGTCGGTGGCGCGCAATTTCTTCATGGGCCGCGAGCCGCGGAAGAAGCTGTTCGGCCTGCTCAACGTGATGGACCTCG ACACCAGCGCCGAGGTCGCGCGCGCCAAGCTCGCCGAGATGGGCATCCACGTGCGCGACCCGCACCAGCCGATCGGCACC ATGTCGGGCGGCGAGCGGCAGTGCCTCGCGATCGCGCGCGCGATCCACTTCGGCGCGCGCGTGCTGATCCTCGACGAGCC CACCGCCGCGCTCGGCGTCAAGCAGAGCTTCAACGTGCTCAAGCTGATCCACGCCGCGCGCGCCAAGGGCATCTCGGTGA TCTTCATCACCCACAACGTCCACCACGCCTATCCGATCGGCGACTCGTTCACGCTGCTCAACCGCGGCCGCTCGCTCGGC ACCTTCACGAAGGATGCGATCTCGAAGGACGAGGTGCTCGACATGATGGCGGGCGGCGCGGAAATGCAGAAGATGGTCGC CGAGCTAGACGGCGCGGTGCTCTAA
Upstream 100 bases:
>100_bases GGACTGGTTCCGCGTATTCCTCGGCGTGATGCTGCTGCTCGCCGTGCTGTTCAACCACTATGTGCGCCGCCGCGTGGCGC AGTCGTAAGGGAGCCGAATC
Downstream 100 bases:
>100_bases CTCCCGACAGGAACCGACATGTCCCATTCCCCCCTCACGTTCGCGCCGGACCGCCCGCTCGACCTGATCTGCATCGGCCG CGTGGCGGTCGACCTGTACG
Product: sugar ABC transporter ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 274; Mature: 273
Protein sequence:
>274_residues MSTPSSSASPSGVAADTILELDGVSKFFGKVIALSGINLRLRRGEVHCLLGDNGAGKSTLIKTLAGVHQPSEGRYLVDGR PVAFTSPKDALDLGIATVYQDLALVPLLSVARNFFMGREPRKKLFGLLNVMDLDTSAEVARAKLAEMGIHVRDPHQPIGT MSGGERQCLAIARAIHFGARVLILDEPTAALGVKQSFNVLKLIHAARAKGISVIFITHNVHHAYPIGDSFTLLNRGRSLG TFTKDAISKDEVLDMMAGGAEMQKMVAELDGAVL
Sequences:
>Translated_274_residues MSTPSSSASPSGVAADTILELDGVSKFFGKVIALSGINLRLRRGEVHCLLGDNGAGKSTLIKTLAGVHQPSEGRYLVDGR PVAFTSPKDALDLGIATVYQDLALVPLLSVARNFFMGREPRKKLFGLLNVMDLDTSAEVARAKLAEMGIHVRDPHQPIGT MSGGERQCLAIARAIHFGARVLILDEPTAALGVKQSFNVLKLIHAARAKGISVIFITHNVHHAYPIGDSFTLLNRGRSLG TFTKDAISKDEVLDMMAGGAEMQKMVAELDGAVL >Mature_273_residues STPSSSASPSGVAADTILELDGVSKFFGKVIALSGINLRLRRGEVHCLLGDNGAGKSTLIKTLAGVHQPSEGRYLVDGRP VAFTSPKDALDLGIATVYQDLALVPLLSVARNFFMGREPRKKLFGLLNVMDLDTSAEVARAKLAEMGIHVRDPHQPIGTM SGGERQCLAIARAIHFGARVLILDEPTAALGVKQSFNVLKLIHAARAKGISVIFITHNVHHAYPIGDSFTLLNRGRSLGT FTKDAISKDEVLDMMAGGAEMQKMVAELDGAVL
Specific function: Part of an ABC transporter complex involved in carbohydrate import. Could be involved in ribose, galactose and/or methyl galactoside import. Responsible for energy coupling to the transport system [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI27881501, Length=251, Percent_Identity=27.0916334661355, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI30795238, Length=251, Percent_Identity=27.0916334661355, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI21536376, Length=213, Percent_Identity=26.7605633802817, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI255708477, Length=251, Percent_Identity=29.4820717131474, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI31657092, Length=220, Percent_Identity=25, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI42741659, Length=231, Percent_Identity=30.3030303030303, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI45446740, Length=231, Percent_Identity=25.974025974026, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI47078218, Length=231, Percent_Identity=25.974025974026, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI116734710, Length=204, Percent_Identity=26.4705882352941, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI105990541, Length=209, Percent_Identity=27.7511961722488, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI6005701, Length=247, Percent_Identity=28.3400809716599, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI153792144, Length=210, Percent_Identity=26.6666666666667, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI73747915, Length=201, Percent_Identity=33.8308457711443, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI73747917, Length=201, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI150417984, Length=209, Percent_Identity=30.1435406698565, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI48995001, Length=241, Percent_Identity=40.2489626556017, Blast_Score=174, Evalue=6e-45, Organism=Escherichia coli, GI1788472, Length=259, Percent_Identity=34.3629343629344, Blast_Score=169, Evalue=2e-43, Organism=Escherichia coli, GI1788210, Length=241, Percent_Identity=33.195020746888, Blast_Score=152, Evalue=2e-38, Organism=Escherichia coli, GI1790525, Length=240, Percent_Identity=32.9166666666667, Blast_Score=148, Evalue=3e-37, Organism=Escherichia coli, GI1789991, Length=243, Percent_Identity=33.7448559670782, Blast_Score=146, Evalue=1e-36, Organism=Escherichia coli, GI1790190, Length=243, Percent_Identity=32.5102880658436, Blast_Score=146, Evalue=1e-36, Organism=Escherichia coli, GI1788897, Length=239, Percent_Identity=33.0543933054393, Blast_Score=130, Evalue=9e-32, Organism=Escherichia coli, GI1787712, Length=220, Percent_Identity=34.5454545454545, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1787792, Length=254, Percent_Identity=30.7086614173228, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1787029, Length=223, Percent_Identity=30.4932735426009, Blast_Score=105, Evalue=5e-24, Organism=Escherichia coli, GI1786345, Length=246, Percent_Identity=30.8943089430894, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI87081791, Length=230, Percent_Identity=30, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI87081709, Length=221, Percent_Identity=29.4117647058824, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1787370, Length=242, Percent_Identity=28.9256198347107, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1789672, Length=228, Percent_Identity=27.6315789473684, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1787089, Length=225, Percent_Identity=29.7777777777778, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1790162, Length=257, Percent_Identity=29.1828793774319, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1787758, Length=226, Percent_Identity=31.858407079646, Blast_Score=87, Evalue=8e-19, Organism=Escherichia coli, GI1790467, Length=223, Percent_Identity=31.390134529148, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI87082267, Length=220, Percent_Identity=30.9090909090909, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1789962, Length=229, Percent_Identity=30.5676855895196, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1789032, Length=241, Percent_Identity=26.9709543568465, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI1786703, Length=228, Percent_Identity=30.2631578947368, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1787105, Length=215, Percent_Identity=29.7674418604651, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1788225, Length=226, Percent_Identity=27.8761061946903, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1787164, Length=222, Percent_Identity=30.1801801801802, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI87081782, Length=247, Percent_Identity=29.1497975708502, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1789864, Length=244, Percent_Identity=25, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1786803, Length=237, Percent_Identity=27.4261603375527, Blast_Score=81, Evalue=9e-17, Organism=Escherichia coli, GI1786872, Length=236, Percent_Identity=28.3898305084746, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786398, Length=230, Percent_Identity=27.3913043478261, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1787547, Length=242, Percent_Identity=28.099173553719, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1789891, Length=238, Percent_Identity=28.5714285714286, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI87081834, Length=214, Percent_Identity=27.5700934579439, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1790544, Length=231, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1788165, Length=219, Percent_Identity=28.7671232876712, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1786253, Length=201, Percent_Identity=30.3482587064677, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1788761, Length=226, Percent_Identity=27.4336283185841, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1787500, Length=236, Percent_Identity=27.5423728813559, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1790739, Length=236, Percent_Identity=23.728813559322, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1789873, Length=215, Percent_Identity=28.3720930232558, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1788450, Length=220, Percent_Identity=26.8181818181818, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1786563, Length=221, Percent_Identity=28.5067873303167, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI48994943, Length=239, Percent_Identity=28.8702928870293, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1788644, Length=235, Percent_Identity=26.3829787234043, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1787759, Length=242, Percent_Identity=30.9917355371901, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1788506, Length=259, Percent_Identity=26.6409266409266, Blast_Score=71, Evalue=9e-14, Organism=Escherichia coli, GI2367384, Length=188, Percent_Identity=26.063829787234, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786654, Length=229, Percent_Identity=30.5676855895196, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1790534, Length=220, Percent_Identity=29.0909090909091, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI145693107, Length=237, Percent_Identity=27.8481012658228, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1789593, Length=218, Percent_Identity=26.605504587156, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1788540, Length=96, Percent_Identity=37.5, Blast_Score=64, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17565586, Length=209, Percent_Identity=29.1866028708134, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI71983516, Length=219, Percent_Identity=27.3972602739726, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71983510, Length=219, Percent_Identity=27.3972602739726, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71983523, Length=219, Percent_Identity=27.3972602739726, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI115534520, Length=242, Percent_Identity=28.099173553719, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17543740, Length=203, Percent_Identity=31.5270935960591, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI115533608, Length=205, Percent_Identity=31.219512195122, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17565938, Length=190, Percent_Identity=34.7368421052632, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17558664, Length=195, Percent_Identity=28.7179487179487, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17510237, Length=229, Percent_Identity=25.764192139738, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71984940, Length=225, Percent_Identity=29.3333333333333, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI193202349, Length=202, Percent_Identity=28.2178217821782, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6324314, Length=192, Percent_Identity=29.6875, Blast_Score=73, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6323959, Length=205, Percent_Identity=28.780487804878, Blast_Score=64, Evalue=3e-11, Organism=Drosophila melanogaster, GI116007184, Length=230, Percent_Identity=31.304347826087, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI221500365, Length=230, Percent_Identity=31.304347826087, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI24666092, Length=236, Percent_Identity=25.4237288135593, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI221512771, Length=233, Percent_Identity=25.7510729613734, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24643674, Length=226, Percent_Identity=24.3362831858407, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI28571209, Length=210, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI28573571, Length=223, Percent_Identity=25.1121076233184, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI28573573, Length=218, Percent_Identity=25.2293577981651, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI17136662, Length=196, Percent_Identity=27.5510204081633, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR015862 - InterPro: IPR015861 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: =3.6.3.17 [H]
Molecular weight: Translated: 29207; Mature: 29076
Theoretical pI: Translated: 9.15; Mature: 9.15
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTPSSSASPSGVAADTILELDGVSKFFGKVIALSGINLRLRRGEVHCLLGDNGAGKSTL CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCCHHHH IKTLAGVHQPSEGRYLVDGRPVAFTSPKDALDLGIATVYQDLALVPLLSVARNFFMGREP HHHHHHCCCCCCCCEEECCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH RKKLFGLLNVMDLDTSAEVARAKLAEMGIHVRDPHQPIGTMSGGERQCLAIARAIHFGAR HHHHHHHHHHHCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCE VLILDEPTAALGVKQSFNVLKLIHAARAKGISVIFITHNVHHAYPIGDSFTLLNRGRSLG EEEEECCCHHHCCHHHHHHHHHHHHHHCCCCEEEEEEECCCEEECCCCCCHHHHCCCCCC TFTKDAISKDEVLDMMAGGAEMQKMVAELDGAVL CHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCCCC >Mature Secondary Structure STPSSSASPSGVAADTILELDGVSKFFGKVIALSGINLRLRRGEVHCLLGDNGAGKSTL CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCCHHHH IKTLAGVHQPSEGRYLVDGRPVAFTSPKDALDLGIATVYQDLALVPLLSVARNFFMGREP HHHHHHCCCCCCCCEEECCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH RKKLFGLLNVMDLDTSAEVARAKLAEMGIHVRDPHQPIGTMSGGERQCLAIARAIHFGAR HHHHHHHHHHHCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCE VLILDEPTAALGVKQSFNVLKLIHAARAKGISVIFITHNVHHAYPIGDSFTLLNRGRSLG EEEEECCCHHHCCHHHHHHHHHHHHHHCCCCEEEEEEECCCEEECCCCCCHHHHCCCCCC TFTKDAISKDEVLDMMAGGAEMQKMVAELDGAVL CHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11823852 [H]