Definition Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence.
Accession NC_012721
Length 2,827,333

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The map label for this gene is 238024503

Identifier: 238024503

GI number: 238024503

Start: 1414882

End: 1416234

Strand: Direct

Name: 238024503

Synonym: bglu_2g11060

Alternate gene names: NA

Gene position: 1414882-1416234 (Clockwise)

Preceding gene: 238024487

Following gene: 238024504

Centisome position: 50.04

GC content: 64.6

Gene sequence:

>1353_bases
ATGCGGATCGACAAACCGCTCTGGCATGAGGGCTTGGTCCTCACGCAGCAGCACTTTCAGCAGCAGGACCGATGGGCGGG
ATTCGCGATGCAGCAGGTCGCGGCCGCTGCGCTCGCCGAACCATGGGGCACCCTAGGCGTCGAGGTCGACGAGGAGGCCC
TGGCAACGGGGCGCCTCAAGCTCACGCGGCTCAAGCTGCGCTTCCCGGACGGGACGCCGGTCGACACGACGATGGCCGAT
GAGGTTCCGCCAGCACGCGAACTGACACAAGGCATGCCTGCCGATTGTCAAAGCGTCGTGGTGCTCGCCGCGCTCGCGCT
ACCGGATGCGAACGGCAACAACTGCCGCTTCGATGAAACCACGCTTGCGCGTCCGCGTCGCTCGTACCGCGAGTTCGTCA
AGGTGACGGACCTGAACGGGACGGGTGAGTCGGAGATCGCCGCCGAGCGGCACGCCGTGCGGCTCCTGTTCGACTTCGAG
TCCCATGCCGACGATACTGTCTGCGCGGTCGCACGGCTTACCCGCAGCACGAGCGGCCTGTTCCAGGTCGATCATCGGTT
CGTGCCGCCATGCCTGACGCTCGGCAGCCATCGGCTTCACCTGGAGCGCGTCAATCGCCTCGCCGACATCCTGCAGGCGA
AAAGTCTTGCGCTCGGCGCGCGCCGCAGCGAGCGCATCGAACAGGTGGCCGAATATGGCGTGGCTGACGTCCAGCTCTTT
TGGCTGCTGCATTGCATTCATGCAGCATGGCCGCAACTGAGGCTATTTGCCACTCATCCGAACCGGCCGCCGGAGCATCT
GTATGTCACGCTGGCACAGCTCGCCAGTGCGTTGATGACATTCTCGACGGGTGCCCAGCTGACCGACATTCCCGCGTACG
ACCACGCACGTGCCGACGAGGTGTTCGCACAGCTCGAATCGATGATTCGTGATCTGCTCGACGCGATCATCCCTTCACGA
GTGGTGTCGATCGGCCTGACCCGCAAGAGCCCTACGACGTGGAGCGGCCAGTTCCTCGACGAACGCATCGTCGGCGATGC
AGCCGACTGGTATCTGTCCGTCAACGCACCGATGCCTGTGTTCGAGCTGGTCGAGCAGTTCCCGCGGCTGTGCAAGATCG
GCGCGCCAGACGACGTCGAGCGCATCATCAACTCGGCGCTGCTGGGAATTCCGCTGAAGGCGGTGCAGCGCGTGCCGGCC
GCGATTCCCGTGCGCCTTGACAACCAGTATTTCGCACTGGATTCGACCAGCGCTGCGCACGCGGAGATGCTCGCCGCGCG
GGCCTGCCAGATCTATCTTCCCGCGTCCGTACCCGACGCCTCGCTTGAACTTTACGCGGTGCTGCGCTCATGA

Upstream 100 bases:

>100_bases
GATAATTCGCATGAGAAAGCAAGAAAATTATCCAAATGGCGATTCCTTCATATAGGATCGCCGGGCCTAGATAGTCAACG
AGAAGTCGCACACCACAGCT

Downstream 100 bases:

>100_bases
ACACCCTGACGCCAGATCATAACGACGTCACCCCGATGGACGATCTGCCTGGCTCCAGCCGTGTGTCTGGCGCAGGTATG
CGTGACTTGCTGCGCGATAC

Product: type VI secretion protein

Products: NA

Alternate protein names: Type VI Secretion Protein Family; Conserved Protein; Replication/Virulence Associated Protein; Type VI Secretion System Protein EvpM; Type VI Secretion System Protein ImpJ; Protein ImpJ/VasE; Type VI Secretion System Core Protein; T6ss M; Type VI Secretion Protein VasE

Number of amino acids: Translated: 450; Mature: 450

Protein sequence:

>450_residues
MRIDKPLWHEGLVLTQQHFQQQDRWAGFAMQQVAAAALAEPWGTLGVEVDEEALATGRLKLTRLKLRFPDGTPVDTTMAD
EVPPARELTQGMPADCQSVVVLAALALPDANGNNCRFDETTLARPRRSYREFVKVTDLNGTGESEIAAERHAVRLLFDFE
SHADDTVCAVARLTRSTSGLFQVDHRFVPPCLTLGSHRLHLERVNRLADILQAKSLALGARRSERIEQVAEYGVADVQLF
WLLHCIHAAWPQLRLFATHPNRPPEHLYVTLAQLASALMTFSTGAQLTDIPAYDHARADEVFAQLESMIRDLLDAIIPSR
VVSIGLTRKSPTTWSGQFLDERIVGDAADWYLSVNAPMPVFELVEQFPRLCKIGAPDDVERIINSALLGIPLKAVQRVPA
AIPVRLDNQYFALDSTSAAHAEMLAARACQIYLPASVPDASLELYAVLRS

Sequences:

>Translated_450_residues
MRIDKPLWHEGLVLTQQHFQQQDRWAGFAMQQVAAAALAEPWGTLGVEVDEEALATGRLKLTRLKLRFPDGTPVDTTMAD
EVPPARELTQGMPADCQSVVVLAALALPDANGNNCRFDETTLARPRRSYREFVKVTDLNGTGESEIAAERHAVRLLFDFE
SHADDTVCAVARLTRSTSGLFQVDHRFVPPCLTLGSHRLHLERVNRLADILQAKSLALGARRSERIEQVAEYGVADVQLF
WLLHCIHAAWPQLRLFATHPNRPPEHLYVTLAQLASALMTFSTGAQLTDIPAYDHARADEVFAQLESMIRDLLDAIIPSR
VVSIGLTRKSPTTWSGQFLDERIVGDAADWYLSVNAPMPVFELVEQFPRLCKIGAPDDVERIINSALLGIPLKAVQRVPA
AIPVRLDNQYFALDSTSAAHAEMLAARACQIYLPASVPDASLELYAVLRS
>Mature_450_residues
MRIDKPLWHEGLVLTQQHFQQQDRWAGFAMQQVAAAALAEPWGTLGVEVDEEALATGRLKLTRLKLRFPDGTPVDTTMAD
EVPPARELTQGMPADCQSVVVLAALALPDANGNNCRFDETTLARPRRSYREFVKVTDLNGTGESEIAAERHAVRLLFDFE
SHADDTVCAVARLTRSTSGLFQVDHRFVPPCLTLGSHRLHLERVNRLADILQAKSLALGARRSERIEQVAEYGVADVQLF
WLLHCIHAAWPQLRLFATHPNRPPEHLYVTLAQLASALMTFSTGAQLTDIPAYDHARADEVFAQLESMIRDLLDAIIPSR
VVSIGLTRKSPTTWSGQFLDERIVGDAADWYLSVNAPMPVFELVEQFPRLCKIGAPDDVERIINSALLGIPLKAVQRVPA
AIPVRLDNQYFALDSTSAAHAEMLAARACQIYLPASVPDASLELYAVLRS

Specific function: Unknown

COG id: COG3522

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49835; Mature: 49835

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIDKPLWHEGLVLTQQHFQQQDRWAGFAMQQVAAAALAEPWGTLGVEVDEEALATGRLK
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHCCEE
LTRLKLRFPDGTPVDTTMADEVPPARELTQGMPADCQSVVVLAALALPDANGNNCRFDET
EEEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCH
TLARPRRSYREFVKVTDLNGTGESEIAAERHAVRLLFDFESHADDTVCAVARLTRSTSGL
HHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHCCCCC
FQVDHRFVPPCLTLGSHRLHLERVNRLADILQAKSLALGARRSERIEQVAEYGVADVQLF
EEECCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHH
WLLHCIHAAWPQLRLFATHPNRPPEHLYVTLAQLASALMTFSTGAQLTDIPAYDHARADE
HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHH
VFAQLESMIRDLLDAIIPSRVVSIGLTRKSPTTWSGQFLDERIVGDAADWYLSVNAPMPV
HHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCH
FELVEQFPRLCKIGAPDDVERIINSALLGIPLKAVQRVPAAIPVRLDNQYFALDSTSAAH
HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHCCCEEEEEECCEEEEECCCCHHH
AEMLAARACQIYLPASVPDASLELYAVLRS
HHHHHHHHEEEEECCCCCCCCHHHHEEECC
>Mature Secondary Structure
MRIDKPLWHEGLVLTQQHFQQQDRWAGFAMQQVAAAALAEPWGTLGVEVDEEALATGRLK
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHCCEE
LTRLKLRFPDGTPVDTTMADEVPPARELTQGMPADCQSVVVLAALALPDANGNNCRFDET
EEEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCH
TLARPRRSYREFVKVTDLNGTGESEIAAERHAVRLLFDFESHADDTVCAVARLTRSTSGL
HHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHCCCCC
FQVDHRFVPPCLTLGSHRLHLERVNRLADILQAKSLALGARRSERIEQVAEYGVADVQLF
EEECCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHH
WLLHCIHAAWPQLRLFATHPNRPPEHLYVTLAQLASALMTFSTGAQLTDIPAYDHARADE
HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHH
VFAQLESMIRDLLDAIIPSRVVSIGLTRKSPTTWSGQFLDERIVGDAADWYLSVNAPMPV
HHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCH
FELVEQFPRLCKIGAPDDVERIINSALLGIPLKAVQRVPAAIPVRLDNQYFALDSTSAAH
HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHCCCEEEEEECCEEEEECCCCHHH
AEMLAARACQIYLPASVPDASLELYAVLRS
HHHHHHHHEEEEECCCCCCCCHHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA