Definition Vibrio cholerae M66-2 chromosome I, complete genome.
Accession NC_012578
Length 2,892,523

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The map label for this gene is 227081735

Identifier: 227081735

GI number: 227081735

Start: 1640487

End: 1643075

Strand: Direct

Name: 227081735

Synonym: VCM66_1522

Alternate gene names: NA

Gene position: 1640487-1643075 (Clockwise)

Preceding gene: 227081734

Following gene: 227081740

Centisome position: 56.71

GC content: 54.07

Gene sequence:

>2589_bases
TTGGCCCGTGCAATTAACTCTGCCTACCGCTCTTTCATCAACTCAAGCGCAACCGACGACAGGAGAACGCGTATGAATGC
GCCACGTTCGCTCTCAGCTTTAAGCACCACCGCTAACCCAGCATTATCGACACTTGTCGAACAAGTCTGCGCCTTGATTG
CTCCTAACTGGCCGCTGGATCGCATGATTGCGGTGAGCCCTTATTGGAAACGGATTGATAAGCCCTTTGCACAAGCCGCC
GCCGAGCTCAAACAATTGGCCGCCTCCCCCATGACCATGACGCTCAGTGATTACCACCTTCGTTGGCAAAATAAGCAAAT
CCAATCAGCGGATTTGCAACAAGCCATCGCTGAACAAAACAGTGACCTTAGCGAATCTACCTTGATTGCCGCTTTACAAC
AGCCCACAGCGCCGAGTCATCCTTGGCCATTGCTGTGCGACACCGTCGATAGCCGGCGTGATCTTGAGCATCATCCCGCA
TGGAATGACGCCATCACCCATCAAATTTCGCAATTTTGCGCCGCCTATTTTGACCATCATCAAGCCGATTGGAGCCCAGA
TCAGCAAACCGGACTCTTTGCCACTTGGCGTGAGGCGATGATCCACGATCGCAGCATTACGCTGCTGCTCAACGAGACAA
GCGTAAAACAAAAAGCCACCAAGCTTCCCGAGGATGCTATGGCCGCCATCGAGCAAACTCTAGCGCAACTCGCTATTGCC
CCTGCGCAACAAGAAACGTATTTACAAGCCGTGTTAATGCGCATCAGTGGCTGGGCATCCTGGTGTGCTTATCTCGCATG
GCAGGCAGGGTTTGAGGGTCGGCACGATGAGCACCTGCGCGATCTGTTGGCGATTCGTCTCTGCTGGGAGAACTTACTTG
ATGATGGTGAGCGCGGTATGGGCTCTGTGTGGTTACAATGGCAGCAATCTTGGGCACCGCGCCAATCGTGCGAGGAGGAT
CGCGCACTACGCATTGCGCTACTGTGGCAACGCAGTGCGGAAATCGCCTATCAACGCCAACTTTTTGCTGCGCTGACATC
AGCACAAGAGTCGGCTCCCCAATCAAGTTATCCCGAGGTGCAAGCGGCTTTTTGTATCGATGTGCGTTCAGAAGTCATTC
GCCGCCACTTAGAAGCGCAATCACCCCATATTCAAACCCTTGGCTTCGCAGGCTTTTTTGGCTTACCGATCCGCTATCAG
TTATTGGGCACCGAAGCAAGCCGCCCACAGTTACCGGGCTTATTAGCGCCGAGCTTGATCGTCTCTGACAGCACAGGGAA
TGAAGATCAAGACGCGAAATTGGCCTTGCGTCGCCGTGCTCGACTCAAGCGACACTTTAGCTGGCGCGCGTTTCATCACC
TCCCCGCCTCCACGTTTACTCTGGTGGAAACCACGGGGTTGGCGTATTTAACCAAGCTCCTTAAACGCACCTTATCCTAC
CCTGCATTGAGTGCATCGGTGGAGCGTTTCGCCTTTACGGAACATGAGTGGCAGAGTGTCAAACCGCAATTCACGCGCGA
TCCACAGACGTTAGCGCAGCGTGCTCAAATGGCGGCCAACATTCTGCGAGCGTTGGGGATCGCCACCGAGCAAGCACGCT
TGGTGCTACTCGTGGGGCACGGCTCACAGACGCAAAATAATCCGCAGCGTGCAGGGCTGGATTGTGGAGCCTGCTGCGGT
CAAAGCGGCGAAGTCAACGCTCGCACGTTAGCAGCATTGCTAAATGATCAGGCGGTGCGCCAAGCGTTGCCTGAATATGG
AATTTCGCTGCGCGATGACGTCCACTTTATCGCGGCGCTACACAACACCACGACAGAAGCGATGAGGCTTTTTGATCGCC
ATGAGATCCCAACAAGCCATCGCGAGGCGCTAGAACAACTTGATCAGCAGCTCACGGCCGCCAGCCATGGCGCACGTCAA
GAACGCGCGCCAAGTCTTGAATTGAATCACAACCACCAAGCGCCTCCAAGCAAGGACAACGCCCTATCTGCCCAGCAGTT
GGAGCAAGCGTTTCTGCGTCGAGCCCATGATTGGGCGCAAACTCGCCCTGAATGGGGGCTGACCAACAATGCCGCTTTTA
TCATTGCACCGCGCCAACGTTCAAAGCAGGCGAAACTCGATGGTCGAGTGTTTTTGCATGAATACCAACCGGAGCGCGAT
CCCGAAGGGCAATTACTGACACAAATTATGACAGCCCCAATGCTGGTCACACACTGGATTAACATGCAGTATTTTGCCTC
CACCGTCGATAATCGCCGCTTCGGCAGTGGCAATAAAACCTTGCATAATGTGGTAGGAGGAAATATCGGTCTTTTTGAAG
GCAACGGAGGCGATCTGCGCTGTGGCTTAGCCCTGCAATCGCTGCATGATGGCCAAGGGTGGCGACATGAAGCCTTACGT
CTCACTGTGGTGATTGATGCGCCGCGCGAACGGATTGAGCAAGTGATGGCTTCACACCGCGTGGTTGAACATTTGGTTAA
GCATGAATGGCTCTATCTGGCCCGTTTTGCTGATCAAGGGATTGAGATATATCTCCAAGGCACTTGGCAACGCATCACTC
AGCCCAGCTCAGATTCCAGTGCGAGATAA

Upstream 100 bases:

>100_bases
TCTGCCTCTACCCCAAAAGCCGTTTATCACTGTGGCTCTATCCTTGGGTTTACCATGGTTTTTATCTTGATGAGACTTTT
ACGCGCCTGACCTTCAAATA

Downstream 100 bases:

>100_bases
AATATTGTTGGCCATCTAGGATGGCCAACAATATTTAAAGCGTTTTATAAACCAATCACACCACATACGATGCGCGCACC
ACCGCCACCCAAAGGCATTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 862; Mature: 861

Protein sequence:

>862_residues
MARAINSAYRSFINSSATDDRRTRMNAPRSLSALSTTANPALSTLVEQVCALIAPNWPLDRMIAVSPYWKRIDKPFAQAA
AELKQLAASPMTMTLSDYHLRWQNKQIQSADLQQAIAEQNSDLSESTLIAALQQPTAPSHPWPLLCDTVDSRRDLEHHPA
WNDAITHQISQFCAAYFDHHQADWSPDQQTGLFATWREAMIHDRSITLLLNETSVKQKATKLPEDAMAAIEQTLAQLAIA
PAQQETYLQAVLMRISGWASWCAYLAWQAGFEGRHDEHLRDLLAIRLCWENLLDDGERGMGSVWLQWQQSWAPRQSCEED
RALRIALLWQRSAEIAYQRQLFAALTSAQESAPQSSYPEVQAAFCIDVRSEVIRRHLEAQSPHIQTLGFAGFFGLPIRYQ
LLGTEASRPQLPGLLAPSLIVSDSTGNEDQDAKLALRRRARLKRHFSWRAFHHLPASTFTLVETTGLAYLTKLLKRTLSY
PALSASVERFAFTEHEWQSVKPQFTRDPQTLAQRAQMAANILRALGIATEQARLVLLVGHGSQTQNNPQRAGLDCGACCG
QSGEVNARTLAALLNDQAVRQALPEYGISLRDDVHFIAALHNTTTEAMRLFDRHEIPTSHREALEQLDQQLTAASHGARQ
ERAPSLELNHNHQAPPSKDNALSAQQLEQAFLRRAHDWAQTRPEWGLTNNAAFIIAPRQRSKQAKLDGRVFLHEYQPERD
PEGQLLTQIMTAPMLVTHWINMQYFASTVDNRRFGSGNKTLHNVVGGNIGLFEGNGGDLRCGLALQSLHDGQGWRHEALR
LTVVIDAPRERIEQVMASHRVVEHLVKHEWLYLARFADQGIEIYLQGTWQRITQPSSDSSAR

Sequences:

>Translated_862_residues
MARAINSAYRSFINSSATDDRRTRMNAPRSLSALSTTANPALSTLVEQVCALIAPNWPLDRMIAVSPYWKRIDKPFAQAA
AELKQLAASPMTMTLSDYHLRWQNKQIQSADLQQAIAEQNSDLSESTLIAALQQPTAPSHPWPLLCDTVDSRRDLEHHPA
WNDAITHQISQFCAAYFDHHQADWSPDQQTGLFATWREAMIHDRSITLLLNETSVKQKATKLPEDAMAAIEQTLAQLAIA
PAQQETYLQAVLMRISGWASWCAYLAWQAGFEGRHDEHLRDLLAIRLCWENLLDDGERGMGSVWLQWQQSWAPRQSCEED
RALRIALLWQRSAEIAYQRQLFAALTSAQESAPQSSYPEVQAAFCIDVRSEVIRRHLEAQSPHIQTLGFAGFFGLPIRYQ
LLGTEASRPQLPGLLAPSLIVSDSTGNEDQDAKLALRRRARLKRHFSWRAFHHLPASTFTLVETTGLAYLTKLLKRTLSY
PALSASVERFAFTEHEWQSVKPQFTRDPQTLAQRAQMAANILRALGIATEQARLVLLVGHGSQTQNNPQRAGLDCGACCG
QSGEVNARTLAALLNDQAVRQALPEYGISLRDDVHFIAALHNTTTEAMRLFDRHEIPTSHREALEQLDQQLTAASHGARQ
ERAPSLELNHNHQAPPSKDNALSAQQLEQAFLRRAHDWAQTRPEWGLTNNAAFIIAPRQRSKQAKLDGRVFLHEYQPERD
PEGQLLTQIMTAPMLVTHWINMQYFASTVDNRRFGSGNKTLHNVVGGNIGLFEGNGGDLRCGLALQSLHDGQGWRHEALR
LTVVIDAPRERIEQVMASHRVVEHLVKHEWLYLARFADQGIEIYLQGTWQRITQPSSDSSAR
>Mature_861_residues
ARAINSAYRSFINSSATDDRRTRMNAPRSLSALSTTANPALSTLVEQVCALIAPNWPLDRMIAVSPYWKRIDKPFAQAAA
ELKQLAASPMTMTLSDYHLRWQNKQIQSADLQQAIAEQNSDLSESTLIAALQQPTAPSHPWPLLCDTVDSRRDLEHHPAW
NDAITHQISQFCAAYFDHHQADWSPDQQTGLFATWREAMIHDRSITLLLNETSVKQKATKLPEDAMAAIEQTLAQLAIAP
AQQETYLQAVLMRISGWASWCAYLAWQAGFEGRHDEHLRDLLAIRLCWENLLDDGERGMGSVWLQWQQSWAPRQSCEEDR
ALRIALLWQRSAEIAYQRQLFAALTSAQESAPQSSYPEVQAAFCIDVRSEVIRRHLEAQSPHIQTLGFAGFFGLPIRYQL
LGTEASRPQLPGLLAPSLIVSDSTGNEDQDAKLALRRRARLKRHFSWRAFHHLPASTFTLVETTGLAYLTKLLKRTLSYP
ALSASVERFAFTEHEWQSVKPQFTRDPQTLAQRAQMAANILRALGIATEQARLVLLVGHGSQTQNNPQRAGLDCGACCGQ
SGEVNARTLAALLNDQAVRQALPEYGISLRDDVHFIAALHNTTTEAMRLFDRHEIPTSHREALEQLDQQLTAASHGARQE
RAPSLELNHNHQAPPSKDNALSAQQLEQAFLRRAHDWAQTRPEWGLTNNAAFIIAPRQRSKQAKLDGRVFLHEYQPERDP
EGQLLTQIMTAPMLVTHWINMQYFASTVDNRRFGSGNKTLHNVVGGNIGLFEGNGGDLRCGLALQSLHDGQGWRHEALRL
TVVIDAPRERIEQVMASHRVVEHLVKHEWLYLARFADQGIEIYLQGTWQRITQPSSDSSAR

Specific function: Unknown

COG id: COG3002

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0753 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1522_VIBCM (C3LMQ9)

Other databases:

- EMBL:   CP001233
- RefSeq:   YP_002810286.1
- GeneID:   7772796
- GenomeReviews:   CP001233_GR
- KEGG:   vcm:VCM66_1522
- OMA:   FAEDWSE
- ProtClustDB:   CLSK874437
- HAMAP:   MF_01871
- InterPro:   IPR018752

Pfam domain/function: PF10070 DUF2309

EC number: NA

Molecular weight: Translated: 96975; Mature: 96844

Theoretical pI: Translated: 7.12; Mature: 7.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARAINSAYRSFINSSATDDRRTRMNAPRSLSALSTTANPALSTLVEQVCALIAPNWPLD
CCCHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCHH
RMIAVSPYWKRIDKPFAQAAAELKQLAASPMTMTLSDYHLRWQNKQIQSADLQQAIAEQN
HEEECCHHHHHHCCHHHHHHHHHHHHHCCCCEEEECHHEEEECCCCHHHHHHHHHHHHCC
SDLSESTLIAALQQPTAPSHPWPLLCDTVDSRRDLEHHPAWNDAITHQISQFCAAYFDHH
CCCHHHHHHHHHHCCCCCCCCCCEEECCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHC
QADWSPDQQTGLFATWREAMIHDRSITLLLNETSVKQKATKLPEDAMAAIEQTLAQLAIA
CCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHC
PAQQETYLQAVLMRISGWASWCAYLAWQAGFEGRHDEHLRDLLAIRLCWENLLDDGERGM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
GSVWLQWQQSWAPRQSCEEDRALRIALLWQRSAEIAYQRQLFAALTSAQESAPQSSYPEV
CHHHHHHHHCCCCHHCCCHHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
QAAFCIDVRSEVIRRHLEAQSPHIQTLGFAGFFGLPIRYQLLGTEASRPQLPGLLAPSLI
HHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHCCCEEEEEECCCCCCCCCCCCCCCCEE
VSDSTGNEDQDAKLALRRRARLKRHFSWRAFHHLPASTFTLVETTGLAYLTKLLKRTLSY
EECCCCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHCC
PALSASVERFAFTEHEWQSVKPQFTRDPQTLAQRAQMAANILRALGIATEQARLVLLVGH
CHHHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC
GSQTQNNPQRAGLDCGACCGQSGEVNARTLAALLNDQAVRQALPEYGISLRDDVHFIAAL
CCCCCCCCHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
HNTTTEAMRLFDRHEIPTSHREALEQLDQQLTAASHGARQERAPSLELNHNHQAPPSKDN
HCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCC
ALSAQQLEQAFLRRAHDWAQTRPEWGLTNNAAFIIAPRQRSKQAKLDGRVFLHEYQPERD
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCC
PEGQLLTQIMTAPMLVTHWINMQYFASTVDNRRFGSGNKTLHNVVGGNIGLFEGNGGDLR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCEEEEECCCCCEE
CGLALQSLHDGQGWRHEALRLTVVIDAPRERIEQVMASHRVVEHLVKHEWLYLARFADQG
EHHHHHHHHCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IEIYLQGTWQRITQPSSDSSAR
EEEEEEECHHHHCCCCCCCCCC
>Mature Secondary Structure 
ARAINSAYRSFINSSATDDRRTRMNAPRSLSALSTTANPALSTLVEQVCALIAPNWPLD
CCHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCHH
RMIAVSPYWKRIDKPFAQAAAELKQLAASPMTMTLSDYHLRWQNKQIQSADLQQAIAEQN
HEEECCHHHHHHCCHHHHHHHHHHHHHCCCCEEEECHHEEEECCCCHHHHHHHHHHHHCC
SDLSESTLIAALQQPTAPSHPWPLLCDTVDSRRDLEHHPAWNDAITHQISQFCAAYFDHH
CCCHHHHHHHHHHCCCCCCCCCCEEECCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHC
QADWSPDQQTGLFATWREAMIHDRSITLLLNETSVKQKATKLPEDAMAAIEQTLAQLAIA
CCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHC
PAQQETYLQAVLMRISGWASWCAYLAWQAGFEGRHDEHLRDLLAIRLCWENLLDDGERGM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
GSVWLQWQQSWAPRQSCEEDRALRIALLWQRSAEIAYQRQLFAALTSAQESAPQSSYPEV
CHHHHHHHHCCCCHHCCCHHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
QAAFCIDVRSEVIRRHLEAQSPHIQTLGFAGFFGLPIRYQLLGTEASRPQLPGLLAPSLI
HHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHCCCEEEEEECCCCCCCCCCCCCCCCEE
VSDSTGNEDQDAKLALRRRARLKRHFSWRAFHHLPASTFTLVETTGLAYLTKLLKRTLSY
EECCCCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHCC
PALSASVERFAFTEHEWQSVKPQFTRDPQTLAQRAQMAANILRALGIATEQARLVLLVGH
CHHHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC
GSQTQNNPQRAGLDCGACCGQSGEVNARTLAALLNDQAVRQALPEYGISLRDDVHFIAAL
CCCCCCCCHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
HNTTTEAMRLFDRHEIPTSHREALEQLDQQLTAASHGARQERAPSLELNHNHQAPPSKDN
HCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCC
ALSAQQLEQAFLRRAHDWAQTRPEWGLTNNAAFIIAPRQRSKQAKLDGRVFLHEYQPERD
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCC
PEGQLLTQIMTAPMLVTHWINMQYFASTVDNRRFGSGNKTLHNVVGGNIGLFEGNGGDLR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCEEEEECCCCCEE
CGLALQSLHDGQGWRHEALRLTVVIDAPRERIEQVMASHRVVEHLVKHEWLYLARFADQG
EHHHHHHHHCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IEIYLQGTWQRITQPSSDSSAR
EEEEEEECHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA