| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is Dml [H]
Identifier: 222102810
GI number: 222102810
Start: 475985
End: 476917
Strand: Direct
Name: Dml [H]
Synonym: Avi_7530
Alternate gene names: 222102810
Gene position: 475985-476917 (Clockwise)
Preceding gene: 222102809
Following gene: 222102811
Centisome position: 75.34
GC content: 57.45
Gene sequence:
>933_bases ATGTTTGATAAACGGCCCAGAACCACATTTCGCGAGCTCTTCTCCAAAGAGCAGGTTTTCACCCCCTGCGTTTGGGATTG CTATTCGGCCAAGGCGGCAGAAATGGCGGGGTTCAAGGCCATTCTCCTCAGTGGTGCATCGCTGGGTTTCAGCATGTCCG GCGTGCCGGATATGGGGCTGCACAATCAGGAAGAACTGATCTGGGCCACTGACCGCATTGCCGACTATTCACCTCTGCCG CTGATCATTGATGCCGATGATTGCTTTGGCGATGTTGCCCAAGCCTACCGGACATGTCGCAGGCTAGCAAAGGCCGGAGC GGCCGCCATTCTGCTGGAAGATACACCCAATGAGCGCGGCTATGCCCGCTTTGGCCGCGCCATGGAGGCCGCGACGCTGG CAGGCAAGGTGGATGGCAATGTCGATCACCCCGTGGTGTCGCAAGAATTGTGGCTGGCCAAGATCAAGGCAGCCCTCGAC GCCTGCGCAGGCACGGATTGTGTGGTGATTGCCCGCACCGAATCCAAGCTGGAAAAGGGTCTGGATGATGCGATTGAGCG CTGCGTGCGGGCCGAAGAACTGGGCGCTGAAATGACCTATGTCCATGGTCTGCGCACGCTGGAAGAATGCCAGAAAGTGG CCAAAGCTCTGCCCGGCTGGAAGATGTTCGGCGATGTGGCAACTGTCGGCGGCAAGGCCTTCGTTGAGTTGGAAGATATC GCCGCCCTCGGCTTCAACATGGTCACCATGCATTATCTCGAGAAAGGCTCGATGTACGGCATGATGGATTTTGGCCGTCG TGTTTTTGCTGATCGCAGCACCCGCTATTCCGACGAGCACACCATGGGCGGCTATTCCAGAGAAGAGCAGCGCCAGATGC TGGAGCGCGACATCGGCTGGATGGATGCGGAAGAAGAATGGAAAAAAATCTGA
Upstream 100 bases:
>100_bases GCAAGGACGCCTGCGCGTCAAAAACCGCGAAGTAAGAAAATCCAATAGATCGGCGAACCGCAGGTTCGGTTCGCCAACGT TCTCCTCAAGGTGTTGATCC
Downstream 100 bases:
>100_bases AAGTCTGTCCCATAATTGTCGCTGGCGGGCTGCAAATGGCAATTTCTGCGCTTCCGGTGCTCACGTACTTGAGTACGCTC CGCTCCGGTTCTCGAAATCA
Product: carboxyphosphonoenolpyruvate phosphonomutase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 310; Mature: 310
Protein sequence:
>310_residues MFDKRPRTTFRELFSKEQVFTPCVWDCYSAKAAEMAGFKAILLSGASLGFSMSGVPDMGLHNQEELIWATDRIADYSPLP LIIDADDCFGDVAQAYRTCRRLAKAGAAAILLEDTPNERGYARFGRAMEAATLAGKVDGNVDHPVVSQELWLAKIKAALD ACAGTDCVVIARTESKLEKGLDDAIERCVRAEELGAEMTYVHGLRTLEECQKVAKALPGWKMFGDVATVGGKAFVELEDI AALGFNMVTMHYLEKGSMYGMMDFGRRVFADRSTRYSDEHTMGGYSREEQRQMLERDIGWMDAEEEWKKI
Sequences:
>Translated_310_residues MFDKRPRTTFRELFSKEQVFTPCVWDCYSAKAAEMAGFKAILLSGASLGFSMSGVPDMGLHNQEELIWATDRIADYSPLP LIIDADDCFGDVAQAYRTCRRLAKAGAAAILLEDTPNERGYARFGRAMEAATLAGKVDGNVDHPVVSQELWLAKIKAALD ACAGTDCVVIARTESKLEKGLDDAIERCVRAEELGAEMTYVHGLRTLEECQKVAKALPGWKMFGDVATVGGKAFVELEDI AALGFNMVTMHYLEKGSMYGMMDFGRRVFADRSTRYSDEHTMGGYSREEQRQMLERDIGWMDAEEEWKKI >Mature_310_residues MFDKRPRTTFRELFSKEQVFTPCVWDCYSAKAAEMAGFKAILLSGASLGFSMSGVPDMGLHNQEELIWATDRIADYSPLP LIIDADDCFGDVAQAYRTCRRLAKAGAAAILLEDTPNERGYARFGRAMEAATLAGKVDGNVDHPVVSQELWLAKIKAALD ACAGTDCVVIARTESKLEKGLDDAIERCVRAEELGAEMTYVHGLRTLEECQKVAKALPGWKMFGDVATVGGKAFVELEDI AALGFNMVTMHYLEKGSMYGMMDFGRRVFADRSTRYSDEHTMGGYSREEQRQMLERDIGWMDAEEEWKKI
Specific function: Catalyzes the formation of proponate and pyruvate from (2R,3S)-2,3-dimethylmalate. Has no activity toward dimethylmaleate, malate, citramalate, isocitrate and citrate [H]
COG id: COG2513
COG function: function code G; PEP phosphonomutase and related enzymes
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the isocitrate lyase/PEP mutase superfamily [H]
Homologues:
Organism=Escherichia coli, GI1786525, Length=214, Percent_Identity=33.1775700934579, Blast_Score=98, Evalue=6e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000918 - InterPro: IPR018523 - InterPro: IPR015813 [H]
Pfam domain/function: PF00463 ICL [H]
EC number: =4.1.3.32 [H]
Molecular weight: Translated: 34523; Mature: 34523
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 7.4 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 7.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFDKRPRTTFRELFSKEQVFTPCVWDCYSAKAAEMAGFKAILLSGASLGFSMSGVPDMGL CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC HNQEELIWATDRIADYSPLPLIIDADDCFGDVAQAYRTCRRLAKAGAAAILLEDTPNERG CCCCCEEEEHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH YARFGRAMEAATLAGKVDGNVDHPVVSQELWLAKIKAALDACAGTDCVVIARTESKLEKG HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHC LDDAIERCVRAEELGAEMTYVHGLRTLEECQKVAKALPGWKMFGDVATVGGKAFVELEDI HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEHHHH AALGFNMVTMHYLEKGSMYGMMDFGRRVFADRSTRYSDEHTMGGYSREEQRQMLERDIGW HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC MDAEEEWKKI CCCHHHHHCC >Mature Secondary Structure MFDKRPRTTFRELFSKEQVFTPCVWDCYSAKAAEMAGFKAILLSGASLGFSMSGVPDMGL CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC HNQEELIWATDRIADYSPLPLIIDADDCFGDVAQAYRTCRRLAKAGAAAILLEDTPNERG CCCCCEEEEHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH YARFGRAMEAATLAGKVDGNVDHPVVSQELWLAKIKAALDACAGTDCVVIARTESKLEKG HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHC LDDAIERCVRAEELGAEMTYVHGLRTLEECQKVAKALPGWKMFGDVATVGGKAFVELEDI HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEHHHH AALGFNMVTMHYLEKGSMYGMMDFGRRVFADRSTRYSDEHTMGGYSREEQRQMLERDIGW HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC MDAEEEWKKI CCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA