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The map label for this gene is dppB [C]

Identifier: 222102811

GI number: 222102811

Start: 476889

End: 478061

Strand: Direct

Name: dppB [C]

Synonym: Avi_7531

Alternate gene names: 222102811

Gene position: 476889-478061 (Clockwise)

Preceding gene: 222102810

Following gene: 222102812

Centisome position: 75.48

GC content: 54.9

Gene sequence:

>1173_bases
ATGCGGAAGAAGAATGGAAAAAAATCTGAAAGTCTGTCCCATAATTGTCGCTGGCGGGCTGCAAATGGCAATTTCTGCGC
TTCCGGTGCTCACGTACTTGAGTACGCTCCGCTCCGGTTCTCGAAATCACCATTTTCGCCACGCCAGCACCAATTCTCGA
ACAGACTTTTACCGTTTGTTGAAACAGAGCCGCTGAAAGGAGGTAACGACGTGACCATGCAAGCCATGCCCTATGTAAAA
GCCATCTCAACACGGCTTTTGGCCGGAATTCCCGTCTTCCTCCTCGTCACCTTTGGTGCGACGGCGCTGTCCAACCTTGC
ACCGGGATCACCGGCGCAGCTGATATTGGGTGATAATGCCACCGCTGAACAGGTGGCGGCTCTCAACCAGACCTATGGCT
ATGACCTGCCGGTTTGGGAACGCTATCTGAAATGGCTTGGCGATTTGTTTCACGGTGATCTTGGGCAAACGCTGTTTTCC
CAACAGCCGGTTTTGCAAGTGGTGATGGATCGCGCCACTGTTACCTTTGAAGTCGCAGCTCTTGCCATGCTGGTGTCGAT
GCTTGGCATACCGCTTGCCATGTTCACCGCAAGCCATCCCGGCAAGCTCACCGACCGGGCCTTCCGCTCTGTGGCCTCCG
TGGTGTTGGCCGTTCCAACATTTGTGATCGTGGTGCTTTTGAGCTACCTGTTTGCCATCGTGCTGCGCTGGTTACCTGCA
ACGGGTTGGGTCAATTTCTCCGAAAATCCGCTGGCCAATCTCTGGTATGTGGCCCTTCCAGTGCTATGCCTCAGCCTGCA
CCAGACGGCCTATCTCTACCGTGTGGCCCGCAATGAATTCGTCACCACCCTTCAAGAAGATTTCATTCAGGTGGCGCGGG
CCAAGGGCCTGCCGCTTGGCTATATCCTGTTTCGCCACGTGCTGCGTCCATCCATGCCGCAGATCCTTACCGTCATGGGC
CTGTCGCTCACCTATATGCTGGCCGGCTCCTTTGTGGTTGAGAGCTATTTTGCCGTACCGGGCATTGGCTGGACTGTGCT
CACGGCGGTCAAAAGCCACGATATTCCGCTGGTGCAGGCGATTTTGTCGCTCACTGTCGTGGTCTTCGTCACCATCTTCA
TGCTGGTGGATATCGGCTATGCCATCATCGATCCACGGGTTAATGTCACATGA

Upstream 100 bases:

>100_bases
TTTGCTGATCGCAGCACCCGCTATTCCGACGAGCACACCATGGGCGGCTATTCCAGAGAAGAGCAGCGCCAGATGCTGGA
GCGCGACATCGGCTGGATGG

Downstream 100 bases:

>100_bases
GCACGCCCGGCACTCCTTCACCATCAATGGCAGATAAGAACAGCGACCTGAGCGCGATTGTGCGAGCCAATATGCCATGG
TCGGCCAGATTGCGGCTGCC

Product: ABC transporter membrane spanning protein (dipeptide)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MRKKNGKKSESLSHNCRWRAANGNFCASGAHVLEYAPLRFSKSPFSPRQHQFSNRLLPFVETEPLKGGNDVTMQAMPYVK
AISTRLLAGIPVFLLVTFGATALSNLAPGSPAQLILGDNATAEQVAALNQTYGYDLPVWERYLKWLGDLFHGDLGQTLFS
QQPVLQVVMDRATVTFEVAALAMLVSMLGIPLAMFTASHPGKLTDRAFRSVASVVLAVPTFVIVVLLSYLFAIVLRWLPA
TGWVNFSENPLANLWYVALPVLCLSLHQTAYLYRVARNEFVTTLQEDFIQVARAKGLPLGYILFRHVLRPSMPQILTVMG
LSLTYMLAGSFVVESYFAVPGIGWTVLTAVKSHDIPLVQAILSLTVVVFVTIFMLVDIGYAIIDPRVNVT

Sequences:

>Translated_390_residues
MRKKNGKKSESLSHNCRWRAANGNFCASGAHVLEYAPLRFSKSPFSPRQHQFSNRLLPFVETEPLKGGNDVTMQAMPYVK
AISTRLLAGIPVFLLVTFGATALSNLAPGSPAQLILGDNATAEQVAALNQTYGYDLPVWERYLKWLGDLFHGDLGQTLFS
QQPVLQVVMDRATVTFEVAALAMLVSMLGIPLAMFTASHPGKLTDRAFRSVASVVLAVPTFVIVVLLSYLFAIVLRWLPA
TGWVNFSENPLANLWYVALPVLCLSLHQTAYLYRVARNEFVTTLQEDFIQVARAKGLPLGYILFRHVLRPSMPQILTVMG
LSLTYMLAGSFVVESYFAVPGIGWTVLTAVKSHDIPLVQAILSLTVVVFVTIFMLVDIGYAIIDPRVNVT
>Mature_390_residues
MRKKNGKKSESLSHNCRWRAANGNFCASGAHVLEYAPLRFSKSPFSPRQHQFSNRLLPFVETEPLKGGNDVTMQAMPYVK
AISTRLLAGIPVFLLVTFGATALSNLAPGSPAQLILGDNATAEQVAALNQTYGYDLPVWERYLKWLGDLFHGDLGQTLFS
QQPVLQVVMDRATVTFEVAALAMLVSMLGIPLAMFTASHPGKLTDRAFRSVASVVLAVPTFVIVVLLSYLFAIVLRWLPA
TGWVNFSENPLANLWYVALPVLCLSLHQTAYLYRVARNEFVTTLQEDFIQVARAKGLPLGYILFRHVLRPSMPQILTVMG
LSLTYMLAGSFVVESYFAVPGIGWTVLTAVKSHDIPLVQAILSLTVVVFVTIFMLVDIGYAIIDPRVNVT

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=306, Percent_Identity=30.718954248366, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1787497, Length=317, Percent_Identity=32.4921135646688, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1789965, Length=332, Percent_Identity=28.9156626506024, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1789888, Length=311, Percent_Identity=28.6173633440514, Blast_Score=134, Evalue=9e-33,
Organism=Escherichia coli, GI1787761, Length=288, Percent_Identity=30.9027777777778, Blast_Score=118, Evalue=7e-28,
Organism=Escherichia coli, GI1788504, Length=285, Percent_Identity=28.4210526315789, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787550, Length=272, Percent_Identity=23.8970588235294, Blast_Score=96, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 42992; Mature: 42992

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKKNGKKSESLSHNCRWRAANGNFCASGAHVLEYAPLRFSKSPFSPRQHQFSNRLLPFV
CCCCCCCCCCCCCCCCEEEECCCCEECCCCHHHHCCCCCCCCCCCCCHHHHHHCCCCCCE
ETEPLKGGNDVTMQAMPYVKAISTRLLAGIPVFLLVTFGATALSNLAPGSPAQLILGDNA
ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC
TAEQVAALNQTYGYDLPVWERYLKWLGDLFHGDLGQTLFSQQPVLQVVMDRATVTFEVAA
CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LAMLVSMLGIPLAMFTASHPGKLTDRAFRSVASVVLAVPTFVIVVLLSYLFAIVLRWLPA
HHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TGWVNFSENPLANLWYVALPVLCLSLHQTAYLYRVARNEFVTTLQEDFIQVARAKGLPLG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
YILFRHVLRPSMPQILTVMGLSLTYMLAGSFVVESYFAVPGIGWTVLTAVKSHDIPLVQA
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHH
ILSLTVVVFVTIFMLVDIGYAIIDPRVNVT
HHHHHHHHHHHHHHHHHCCHHEECCCCCCC
>Mature Secondary Structure
MRKKNGKKSESLSHNCRWRAANGNFCASGAHVLEYAPLRFSKSPFSPRQHQFSNRLLPFV
CCCCCCCCCCCCCCCCEEEECCCCEECCCCHHHHCCCCCCCCCCCCCHHHHHHCCCCCCE
ETEPLKGGNDVTMQAMPYVKAISTRLLAGIPVFLLVTFGATALSNLAPGSPAQLILGDNA
ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC
TAEQVAALNQTYGYDLPVWERYLKWLGDLFHGDLGQTLFSQQPVLQVVMDRATVTFEVAA
CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LAMLVSMLGIPLAMFTASHPGKLTDRAFRSVASVVLAVPTFVIVVLLSYLFAIVLRWLPA
HHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TGWVNFSENPLANLWYVALPVLCLSLHQTAYLYRVARNEFVTTLQEDFIQVARAKGLPLG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
YILFRHVLRPSMPQILTVMGLSLTYMLAGSFVVESYFAVPGIGWTVLTAVKSHDIPLVQA
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHH
ILSLTVVVFVTIFMLVDIGYAIIDPRVNVT
HHHHHHHHHHHHHHHHHCCHHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]