Definition Thermomicrobium roseum DSM 5159 chromosome, complete genome.
Accession NC_011959
Length 2,003,006

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The map label for this gene is 221633477

Identifier: 221633477

GI number: 221633477

Start: 1480703

End: 1481332

Strand: Reverse

Name: 221633477

Synonym: trd_1499

Alternate gene names: NA

Gene position: 1481332-1480703 (Counterclockwise)

Preceding gene: 221633478

Following gene: 221633476

Centisome position: 73.96

GC content: 65.08

Gene sequence:

>630_bases
ATGCGGATCCGGAAGGGAATCGTTCTCCTGCTCCTCGGTACGAGTGCTCTGATCGCCTGTCGCTCAGCCCCGCCGACGCC
GACCGTCGTGCCGAGTCCGACCAGTGTCCCGACCGCGGTGGCACCCACTCCGACGCCGGTGAGGACGCCTGCGCCGGTGG
TTCTCAAGCCGCCCGATCTCGTCCTGAAGGTCGCAAGCGGCGAGCAGCAGGCGACGATCGGTCCGTTCTTTTGGGTGCTC
GATTCCGGCTTTGCCGGCGAGACGACCGCTCCCGGGCTCGTCCCTCCGAGCGAACAGCCGCTCGCCGTTCGGCCGGGGGA
GACGCTCAGCTTTGCATTCAGCGAGGACCGGATTCCGGAGAAGGTGTCGCTCGCAGTCTATCCACAGGAGGGGAATTTCG
AGCCGATCTCGCCCGCTCCGGATGCACCGAAAGGGTTCGTCGCCAAGACCGATCCCGTTGTGACGGCTGACCCGGAACGC
AGCGGTGCTGGCTTCCAGTGGACGATGCCGGAACTGAGCCCGGGTACCTACTTCCTGCGTGTGGAAGTGGAATGGCCACA
GCACCCGAAGAATCCCCGACCCGACAAGGTACCGCGGGCAGTGTATGCCTTTTGGATTCGAGTCTCCTGA

Upstream 100 bases:

>100_bases
GTTTGCTGTGACAGTGAGGGATTCGGAAAGAGCTGTGTGGTACAGTCGGCGCGGTTGCCGGATACCTGGCCGCCGGTGTT
CTGGAAGGGAAGAGGGGTCG

Downstream 100 bases:

>100_bases
ACGGTCGAAACAGTGGCGCTGGACACTGGCTTACCGGCAGGCTTGTTACTCGCTAGTCTTCTCGGTAGCATGCTGGGGTT
AGGCTGGCATGCGGTGTTTG

Product: putative lipoprotein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MRIRKGIVLLLLGTSALIACRSAPPTPTVVPSPTSVPTAVAPTPTPVRTPAPVVLKPPDLVLKVASGEQQATIGPFFWVL
DSGFAGETTAPGLVPPSEQPLAVRPGETLSFAFSEDRIPEKVSLAVYPQEGNFEPISPAPDAPKGFVAKTDPVVTADPER
SGAGFQWTMPELSPGTYFLRVEVEWPQHPKNPRPDKVPRAVYAFWIRVS

Sequences:

>Translated_209_residues
MRIRKGIVLLLLGTSALIACRSAPPTPTVVPSPTSVPTAVAPTPTPVRTPAPVVLKPPDLVLKVASGEQQATIGPFFWVL
DSGFAGETTAPGLVPPSEQPLAVRPGETLSFAFSEDRIPEKVSLAVYPQEGNFEPISPAPDAPKGFVAKTDPVVTADPER
SGAGFQWTMPELSPGTYFLRVEVEWPQHPKNPRPDKVPRAVYAFWIRVS
>Mature_209_residues
MRIRKGIVLLLLGTSALIACRSAPPTPTVVPSPTSVPTAVAPTPTPVRTPAPVVLKPPDLVLKVASGEQQATIGPFFWVL
DSGFAGETTAPGLVPPSEQPLAVRPGETLSFAFSEDRIPEKVSLAVYPQEGNFEPISPAPDAPKGFVAKTDPVVTADPER
SGAGFQWTMPELSPGTYFLRVEVEWPQHPKNPRPDKVPRAVYAFWIRVS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22394; Mature: 22394

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIRKGIVLLLLGTSALIACRSAPPTPTVVPSPTSVPTAVAPTPTPVRTPAPVVLKPPDL
CCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEECCCCE
VLKVASGEQQATIGPFFWVLDSGFAGETTAPGLVPPSEQPLAVRPGETLSFAFSEDRIPE
EEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCC
KVSLAVYPQEGNFEPISPAPDAPKGFVAKTDPVVTADPERSGAGFQWTMPELSPGTYFLR
EEEEEEECCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCCCCEEEECCCCCCCEEEEE
VEVEWPQHPKNPRPDKVPRAVYAFWIRVS
EEEECCCCCCCCCCCCCCCEEEEEEEEEC
>Mature Secondary Structure
MRIRKGIVLLLLGTSALIACRSAPPTPTVVPSPTSVPTAVAPTPTPVRTPAPVVLKPPDL
CCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEECCCCE
VLKVASGEQQATIGPFFWVLDSGFAGETTAPGLVPPSEQPLAVRPGETLSFAFSEDRIPE
EEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCC
KVSLAVYPQEGNFEPISPAPDAPKGFVAKTDPVVTADPERSGAGFQWTMPELSPGTYFLR
EEEEEEECCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCCCCEEEECCCCCCCEEEEE
VEVEWPQHPKNPRPDKVPRAVYAFWIRVS
EEEECCCCCCCCCCCCCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA