| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is thrB [H]
Identifier: 221633233
GI number: 221633233
Start: 1234976
End: 1235923
Strand: Reverse
Name: thrB [H]
Synonym: trd_1251
Alternate gene names: 221633233
Gene position: 1235923-1234976 (Counterclockwise)
Preceding gene: 221633234
Following gene: 221633232
Centisome position: 61.7
GC content: 65.72
Gene sequence:
>948_bases GTGCGTTGTGAAGTGCGTGTTCCCGCTTCGAGTGCCAATCTCGGACCCGGTTTCGACGTGCTGGCGGTGGCCCTCGGCCG CTATCTTTCGGCTCGCTACGAGCCGGACGAGACGATCGGCGAGCTTCGGGTAGTTGTTCGACCAGAACTCCACGGCGGGC GCAACCTCGTCGCCGAGGCGATGCGCTATTACGCGTCATCGACTGGTCGATCGCTCCCTGGTGGCACGCTCACCGTTGAC TCCGACATTCCCGTGGCTCGGGGGTTGGGGAGTTCGGCGGCAGCGATCGTAGCCGGATTAGTTCTCGCCAATGAGCTGTG CGGGGAGCCGCTCGGGCGCTCGGAATTGTTCCGCATGGCGTGCGAGCTCGAGGGTCATGGCGACAACGTCGGTGCAGCGC TCTTCGGTGGGGTCGTGCTCGCGGTCGTTGACGAGGAAGGGCCGCAGGCAGTTGCGGTACCGGTCGAGTTCCCGCTCGTG GCGGTCGTTTTGGTACCAGATGCTCTCGGCTACACGAGCGATGCGCGTGCTGTCCTGCCGCGGCGGGTGCGCCGGGTCAC TGCCGTGCGGACTGCAGCGCACACCGCGCTTTTGGTCCTGGCTCTGGCGACTGGGCAGCCGGACCTTTTGCGGACAGCAA TGACCGACGAGCTCCATCAACCTTATCGCGCGGTCTTGTACCCGCATCTGGAGGAGGCAATCGATCGCGCACTGGTGGCT GGCGCCTACGGCGCAGCGCTGTCCGGGGCGGGGCCATCGGTCCTCGCGTTCTGTTCTCCGGAGCGAGCGTCGGCGGTGCA AAGGGCGTTTGCTGATCTCCTGGCGCGACGCGCGATGGATGGGGAAGCGCTCGTACTACCGATCGATCGGCAAGGTGCAC AGATTCTCCGCGCCGACGAACGCGGTCCGGTGAGCGCGCCCGAAGCGATTTCCAGCCATCACGAGTAA
Upstream 100 bases:
>100_bases GCAGTCTTGGCGTATCATCTCGGGGATCCTCCACGACCGCTTGCGAACCGGCCGGTGACGATCGCGCCCACCCTCGACGC ACTGGCAGGAGTATTGGCTC
Downstream 100 bases:
>100_bases GTAACCGCACGATTTGCTTCGTTCCTGGTTCATCTCTGTGAACGGAAGTGATCCCCCGTCTGGAGCCGCCTCGCCCGGCG CTCGACGCGTTCGACGGCGA
Product: homoserine kinase
Products: NA
Alternate protein names: HK; HSK [H]
Number of amino acids: Translated: 315; Mature: 315
Protein sequence:
>315_residues MRCEVRVPASSANLGPGFDVLAVALGRYLSARYEPDETIGELRVVVRPELHGGRNLVAEAMRYYASSTGRSLPGGTLTVD SDIPVARGLGSSAAAIVAGLVLANELCGEPLGRSELFRMACELEGHGDNVGAALFGGVVLAVVDEEGPQAVAVPVEFPLV AVVLVPDALGYTSDARAVLPRRVRRVTAVRTAAHTALLVLALATGQPDLLRTAMTDELHQPYRAVLYPHLEEAIDRALVA GAYGAALSGAGPSVLAFCSPERASAVQRAFADLLARRAMDGEALVLPIDRQGAQILRADERGPVSAPEAISSHHE
Sequences:
>Translated_315_residues MRCEVRVPASSANLGPGFDVLAVALGRYLSARYEPDETIGELRVVVRPELHGGRNLVAEAMRYYASSTGRSLPGGTLTVD SDIPVARGLGSSAAAIVAGLVLANELCGEPLGRSELFRMACELEGHGDNVGAALFGGVVLAVVDEEGPQAVAVPVEFPLV AVVLVPDALGYTSDARAVLPRRVRRVTAVRTAAHTALLVLALATGQPDLLRTAMTDELHQPYRAVLYPHLEEAIDRALVA GAYGAALSGAGPSVLAFCSPERASAVQRAFADLLARRAMDGEALVLPIDRQGAQILRADERGPVSAPEAISSHHE >Mature_315_residues MRCEVRVPASSANLGPGFDVLAVALGRYLSARYEPDETIGELRVVVRPELHGGRNLVAEAMRYYASSTGRSLPGGTLTVD SDIPVARGLGSSAAAIVAGLVLANELCGEPLGRSELFRMACELEGHGDNVGAALFGGVVLAVVDEEGPQAVAVPVEFPLV AVVLVPDALGYTSDARAVLPRRVRRVTAVRTAAHTALLVLALATGQPDLLRTAMTDELHQPYRAVLYPHLEEAIDRALVA GAYGAALSGAGPSVLAFCSPERASAVQRAFADLLARRAMDGEALVLPIDRQGAQILRADERGPVSAPEAISSHHE
Specific function: Catalyzes the ATP-dependent phosphorylation of L- homoserine to L-homoserine phosphate [H]
COG id: COG0083
COG function: function code E; Homoserine kinase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GHMP kinase family. Homoserine kinase subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786184, Length=312, Percent_Identity=31.0897435897436, Blast_Score=130, Evalue=1e-31, Organism=Saccharomyces cerevisiae, GI6321814, Length=351, Percent_Identity=28.7749287749288, Blast_Score=121, Evalue=2e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006204 - InterPro: IPR013750 - InterPro: IPR006203 - InterPro: IPR000870 - InterPro: IPR020568 - InterPro: IPR014721 [H]
Pfam domain/function: PF08544 GHMP_kinases_C; PF00288 GHMP_kinases_N [H]
EC number: =2.7.1.39 [H]
Molecular weight: Translated: 32977; Mature: 32977
Theoretical pI: Translated: 5.20; Mature: 5.20
Prosite motif: PS00627 GHMP_KINASES_ATP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRCEVRVPASSANLGPGFDVLAVALGRYLSARYEPDETIGELRVVVRPELHGGRNLVAEA CCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHEEEEECCCCCCCHHHHHHH MRYYASSTGRSLPGGTLTVDSDIPVARGLGSSAAAIVAGLVLANELCGEPLGRSELFRMA HHHHHHHCCCCCCCCEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH CELEGHGDNVGAALFGGVVLAVVDEEGPQAVAVPVEFPLVAVVLVPDALGYTSDARAVLP HHCCCCCCCHHHHHHCCEEEEEEECCCCCEEEEECCCCEEEEEEECHHCCCCCCHHHHHH RRVRRVTAVRTAAHTALLVLALATGQPDLLRTAMTDELHQPYRAVLYPHLEEAIDRALVA HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH GAYGAALSGAGPSVLAFCSPERASAVQRAFADLLARRAMDGEALVLPIDRQGAQILRADE HHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHEECCC RGPVSAPEAISSHHE CCCCCCCHHHHCCCC >Mature Secondary Structure MRCEVRVPASSANLGPGFDVLAVALGRYLSARYEPDETIGELRVVVRPELHGGRNLVAEA CCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHEEEEECCCCCCCHHHHHHH MRYYASSTGRSLPGGTLTVDSDIPVARGLGSSAAAIVAGLVLANELCGEPLGRSELFRMA HHHHHHHCCCCCCCCEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH CELEGHGDNVGAALFGGVVLAVVDEEGPQAVAVPVEFPLVAVVLVPDALGYTSDARAVLP HHCCCCCCCHHHHHHCCEEEEEEECCCCCEEEEECCCCEEEEEEECHHCCCCCCHHHHHH RRVRRVTAVRTAAHTALLVLALATGQPDLLRTAMTDELHQPYRAVLYPHLEEAIDRALVA HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH GAYGAALSGAGPSVLAFCSPERASAVQRAFADLLARRAMDGEALVLPIDRQGAQILRADE HHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHEECCC RGPVSAPEAISSHHE CCCCCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]