| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221632197
Identifier: 221632197
GI number: 221632197
Start: 168348
End: 168770
Strand: Reverse
Name: 221632197
Synonym: trd_0163
Alternate gene names: NA
Gene position: 168770-168348 (Counterclockwise)
Preceding gene: 221632198
Following gene: 221632195
Centisome position: 8.43
GC content: 59.34
Gene sequence:
>423_bases ATGGACAAGAAAACGCTCATCGATGGACTGAACCAGGATCTGGCGGGCGAATTCCAGGCCATCATCATGTACATCCACTA CGCTGCCGCAGCGACCGGTGTGGATCGCATCGAACTGGCTGAGTTCTTCCAGAAGGAGATCCAGGACGAGCTTCGTCATG CGCTGTTCCTGGCCAACAAGATCACTGCGCTCGGCGGCGAGCCGGTCGATGAGCCGCTGCCGGTACCCAGGGCGAACTCG AATCGGGAAATGATCGAACGGGTGCTGGAAGCAGAGGAACGTACCATCAAGAGCTACGTCGAGCGCATGAAGCAGGCCGA AGAGTTCGGCGACTACGGCCTGGCGAACGACCTCCAGGAGATCATCTCAGACGAGACGCGCCACAAGGAGGAGTGCGAGA AACTCCTCCGCGGCGTCGCTTGA
Upstream 100 bases:
>100_bases TGGATCTGCGCTGGCAACCGGAGCGGGCGACTGCCGCCACTCCCTGAGGCCGCACGAGCTATACTTCCCTCGTCGGGTTC AGGGAACTGGAGGGAAAACC
Downstream 100 bases:
>100_bases GCGACGGCCGATCAGCTCGGCTGCCCAGGCTCGCCCAAGCCGACCGCTCGGCGGGCCTGGGCCAGTGCGTCGCTCAACTT TTGCTGCTCGACTGCGAGCG
Product: hypothetical protein
Products: NA
Alternate protein names: Bacterioferritin; Ferritin-Like Domain-Containing Protein
Number of amino acids: Translated: 140; Mature: 140
Protein sequence:
>140_residues MDKKTLIDGLNQDLAGEFQAIIMYIHYAAAATGVDRIELAEFFQKEIQDELRHALFLANKITALGGEPVDEPLPVPRANS NREMIERVLEAEERTIKSYVERMKQAEEFGDYGLANDLQEIISDETRHKEECEKLLRGVA
Sequences:
>Translated_140_residues MDKKTLIDGLNQDLAGEFQAIIMYIHYAAAATGVDRIELAEFFQKEIQDELRHALFLANKITALGGEPVDEPLPVPRANS NREMIERVLEAEERTIKSYVERMKQAEEFGDYGLANDLQEIISDETRHKEECEKLLRGVA >Mature_140_residues MDKKTLIDGLNQDLAGEFQAIIMYIHYAAAATGVDRIELAEFFQKEIQDELRHALFLANKITALGGEPVDEPLPVPRANS NREMIERVLEAEERTIKSYVERMKQAEEFGDYGLANDLQEIISDETRHKEECEKLLRGVA
Specific function: Unknown
COG id: COG1633
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15936; Mature: 15936
Theoretical pI: Translated: 4.40; Mature: 4.40
Prosite motif: PS50905 FERRITIN_LIKE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKKTLIDGLNQDLAGEFQAIIMYIHYAAAATGVDRIELAEFFQKEIQDELRHALFLANK CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH ITALGGEPVDEPLPVPRANSNREMIERVLEAEERTIKSYVERMKQAEEFGDYGLANDLQE HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH IISDETRHKEECEKLLRGVA HHHHHHCCHHHHHHHHHCCC >Mature Secondary Structure MDKKTLIDGLNQDLAGEFQAIIMYIHYAAAATGVDRIELAEFFQKEIQDELRHALFLANK CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH ITALGGEPVDEPLPVPRANSNREMIERVLEAEERTIKSYVERMKQAEEFGDYGLANDLQE HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH IISDETRHKEECEKLLRGVA HHHHHHCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA