| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is hflX [H]
Identifier: 220904152
GI number: 220904152
Start: 1027950
End: 1029635
Strand: Reverse
Name: hflX [H]
Synonym: Ddes_0879
Alternate gene names: 220904152
Gene position: 1029635-1027950 (Counterclockwise)
Preceding gene: 220904153
Following gene: 220904150
Centisome position: 35.83
GC content: 61.8
Gene sequence:
>1686_bases TTGCGCCAGGAGCATGATATTTCAAAACCAGAAGGCAATCTGCAAGGGCTGAAACCCAGCCAGCTGGCCGCCCTCAACCG CCTGTTTAACCGCCGTTTTCCGGCGGAAGACGTGTATACGGTGGAGCAGGCGCGCGAACTGGCCCTGCTGTCACGCGCTC TCGGGCGGCAAATAGGCCTGCTCATTGACCGCAAGGGCCGTGTACAGACGGTCATTGTGGGCAAGGCCGGCAGCATCCTG ATACCCGAACTGCCCCGAGGCCGCAGCGGCGGCGAGCGTTTGCGCGGCCTTCGGCTGCTGCATACCCACCTGACCCCCGA CGGCCTCAGCCAGGAAGACCTGATGGACATGCTCTTTCTGCGCCTGGATGCCGTCATTGTCCTGACTGTCAATCCTGTGG GCGAACCGGTACAGTGGCAGGCGGCGCATCTTTTGCCCACAAACGTCAACGGGCAAGGTTATCATCTGGAGCTGCCACGC CCGTGGGACCGCACAGCGGCCCAGATGGTGGGTACGGCCGAAGCGCTGGAAAAAGACCTCTCCCGCCGGGCCGAAAGCAG CCATGAAGCGGAAAACAGGCCCCGCGCCCTGCTTATCTCTGTGGCAGCCCTGCCCCGCATCATGCAGGAGCGTAATCTGG ACGAACTGGCCGAACTGGCCCGCACAGCCGGGCTTGCCATAGCCGGGCGCATGGTGCAGCGCGTCCCCCAGGTGAACCCG CGCCTGATCATGGGCCGGGGCAAGGTGGCGGAACTGGAGGTGCTGACCCTGCAGGGTCGGGCGGACACTCTTGTTTTTGA TGGTGAACTTTCGCCTGCGCAGCTGCATAATCTGGCAGATATTACCGAGCGCAAAGTCATTGACCGCACCCAGCTTATTC TTGATATCTTTGCCCAGCATGCAGTAAGCCGGGCCGGAAAGCTGCAGGTTGAGCTGGCCCAGTTGCGCTATACCCAGCCG CGACTGGTGGGCAAAAACCGCGCCATGGACCGCCTTATGGGCGGCATCGGCGGGCGCGGCCCCGGCGAAACAAAACTTGA AACCGACCGACGCAAAATACGCGAGCGTATGGCCCGCATCCGGAAAGACCTTGAGCGCTTACGCCGCCAGCGTGCCTTCA CCCGCGACCGCCGTTCACGCCAGGGCATTCCTCTGGCGGCGCTGGTGGGCTACACCAATGCGGGCAAATCCACCCTGCTC AACACGCTCACCCGCTCTGAGGTCCTGGTGGAAAACAAACTTTTCGCCACGCTTGATCCCACCACACGGCGCTTGCGCTT TCCGGCCGAGAAAGAACTTATCCTGGCGGACACCGTGGGCTTTATCCGCAATCTGCCCAAAGAGCTGATGGACGCGTTTC GCGCCACCCTTGAGGAGCTGGAAGCCGCCCACCTGCTTTTGCATGTGGCCGACGCCTCTCACCCTGACCTGTTGCAGCAG ATCAGCGCCGTTGAAACCATTCTGGCAGAAATGGAGCTTGACCGTATGCCCCGTCTGCTCATCCTGAACAAGTGGGACCA GCTTGAGGCCCCGGCCAGGGCTGAACTGGCCGACGCCTTTCCCCATGCCCTGCCCGTGGCTGCCAAAACCGGCGAAGGGT GCAAGCCCTTGCTTGAACAGCTTGAAATGCGCCTGCTGCATCAGGCCACCAACATCGTGACCGAAATATCCCCCAGTCTG AATTAG
Upstream 100 bases:
>100_bases ATCTGCGCCCGTAACCACCATCAGGCAGGGCGGCCCCGGGCCGCCCTGTTTTTTTCAGCCGTGGCCCGCCAGCATGCGGG CCAGAGCGAAAAGCGCACCA
Downstream 100 bases:
>100_bases GGAATTTTTCCCTGATATTGCTCTGGAGACTGCGCGGCAACTTCCTACATCGCCTGCCTGAACCAGCCACAACATCGCCA GCTGCCCGAATCTGCCCAAA
Product: GTP-binding proten HflX
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 561; Mature: 561
Protein sequence:
>561_residues MRQEHDISKPEGNLQGLKPSQLAALNRLFNRRFPAEDVYTVEQARELALLSRALGRQIGLLIDRKGRVQTVIVGKAGSIL IPELPRGRSGGERLRGLRLLHTHLTPDGLSQEDLMDMLFLRLDAVIVLTVNPVGEPVQWQAAHLLPTNVNGQGYHLELPR PWDRTAAQMVGTAEALEKDLSRRAESSHEAENRPRALLISVAALPRIMQERNLDELAELARTAGLAIAGRMVQRVPQVNP RLIMGRGKVAELEVLTLQGRADTLVFDGELSPAQLHNLADITERKVIDRTQLILDIFAQHAVSRAGKLQVELAQLRYTQP RLVGKNRAMDRLMGGIGGRGPGETKLETDRRKIRERMARIRKDLERLRRQRAFTRDRRSRQGIPLAALVGYTNAGKSTLL NTLTRSEVLVENKLFATLDPTTRRLRFPAEKELILADTVGFIRNLPKELMDAFRATLEELEAAHLLLHVADASHPDLLQQ ISAVETILAEMELDRMPRLLILNKWDQLEAPARAELADAFPHALPVAAKTGEGCKPLLEQLEMRLLHQATNIVTEISPSL N
Sequences:
>Translated_561_residues MRQEHDISKPEGNLQGLKPSQLAALNRLFNRRFPAEDVYTVEQARELALLSRALGRQIGLLIDRKGRVQTVIVGKAGSIL IPELPRGRSGGERLRGLRLLHTHLTPDGLSQEDLMDMLFLRLDAVIVLTVNPVGEPVQWQAAHLLPTNVNGQGYHLELPR PWDRTAAQMVGTAEALEKDLSRRAESSHEAENRPRALLISVAALPRIMQERNLDELAELARTAGLAIAGRMVQRVPQVNP RLIMGRGKVAELEVLTLQGRADTLVFDGELSPAQLHNLADITERKVIDRTQLILDIFAQHAVSRAGKLQVELAQLRYTQP RLVGKNRAMDRLMGGIGGRGPGETKLETDRRKIRERMARIRKDLERLRRQRAFTRDRRSRQGIPLAALVGYTNAGKSTLL NTLTRSEVLVENKLFATLDPTTRRLRFPAEKELILADTVGFIRNLPKELMDAFRATLEELEAAHLLLHVADASHPDLLQQ ISAVETILAEMELDRMPRLLILNKWDQLEAPARAELADAFPHALPVAAKTGEGCKPLLEQLEMRLLHQATNIVTEISPSL N >Mature_561_residues MRQEHDISKPEGNLQGLKPSQLAALNRLFNRRFPAEDVYTVEQARELALLSRALGRQIGLLIDRKGRVQTVIVGKAGSIL IPELPRGRSGGERLRGLRLLHTHLTPDGLSQEDLMDMLFLRLDAVIVLTVNPVGEPVQWQAAHLLPTNVNGQGYHLELPR PWDRTAAQMVGTAEALEKDLSRRAESSHEAENRPRALLISVAALPRIMQERNLDELAELARTAGLAIAGRMVQRVPQVNP RLIMGRGKVAELEVLTLQGRADTLVFDGELSPAQLHNLADITERKVIDRTQLILDIFAQHAVSRAGKLQVELAQLRYTQP RLVGKNRAMDRLMGGIGGRGPGETKLETDRRKIRERMARIRKDLERLRRQRAFTRDRRSRQGIPLAALVGYTNAGKSTLL NTLTRSEVLVENKLFATLDPTTRRLRFPAEKELILADTVGFIRNLPKELMDAFRATLEELEAAHLLLHVADASHPDLLQQ ISAVETILAEMELDRMPRLLILNKWDQLEAPARAELADAFPHALPVAAKTGEGCKPLLEQLEMRLLHQATNIVTEISPSL N
Specific function: Unknown
COG id: COG2262
COG function: function code R; GTPases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI310133118, Length=238, Percent_Identity=36.1344537815126, Blast_Score=130, Evalue=3e-30, Organism=Homo sapiens, GI310133116, Length=230, Percent_Identity=36.0869565217391, Blast_Score=129, Evalue=9e-30, Organism=Homo sapiens, GI310124269, Length=213, Percent_Identity=37.0892018779343, Blast_Score=128, Evalue=2e-29, Organism=Homo sapiens, GI310124267, Length=213, Percent_Identity=37.0892018779343, Blast_Score=128, Evalue=2e-29, Organism=Homo sapiens, GI310124171, Length=213, Percent_Identity=37.0892018779343, Blast_Score=128, Evalue=2e-29, Organism=Homo sapiens, GI310124169, Length=213, Percent_Identity=37.0892018779343, Blast_Score=128, Evalue=2e-29, Organism=Escherichia coli, GI1790615, Length=336, Percent_Identity=45.5357142857143, Blast_Score=261, Evalue=8e-71, Organism=Caenorhabditis elegans, GI17561038, Length=289, Percent_Identity=27.681660899654, Blast_Score=110, Evalue=3e-24, Organism=Drosophila melanogaster, GI24650079, Length=322, Percent_Identity=34.7826086956522, Blast_Score=134, Evalue=2e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR016496 - InterPro: IPR006073 - InterPro: IPR002917 [H]
Pfam domain/function: PF01926 MMR_HSR1 [H]
EC number: NA
Molecular weight: Translated: 62732; Mature: 62732
Theoretical pI: Translated: 10.27; Mature: 10.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRQEHDISKPEGNLQGLKPSQLAALNRLFNRRFPAEDVYTVEQARELALLSRALGRQIGL CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCE LIDRKGRVQTVIVGKAGSILIPELPRGRSGGERLRGLRLLHTHLTPDGLSQEDLMDMLFL EEECCCCEEEEEEECCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH RLDAVIVLTVNPVGEPVQWQAAHLLPTNVNGQGYHLELPRPWDRTAAQMVGTAEALEKDL HHCEEEEEEECCCCCCCCCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHH SRRAESSHEAENRPRALLISVAALPRIMQERNLDELAELARTAGLAIAGRMVQRVPQVNP HHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC RLIMGRGKVAELEVLTLQGRADTLVFDGELSPAQLHNLADITERKVIDRTQLILDIFAQH EEEECCCCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVSRAGKLQVELAQLRYTQPRLVGKNRAMDRLMGGIGGRGPGETKLETDRRKIRERMARI HHHHCCCCEEEHHHHHCCCCHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH RKDLERLRRQRAFTRDRRSRQGIPLAALVGYTNAGKSTLLNTLTRSEVLVENKLFATLDP HHHHHHHHHHHHHHHHHHHCCCCCEEHEECCCCCCHHHHHHHHHHHHHHHHCCEEEEECC TTRRLRFPAEKELILADTVGFIRNLPKELMDAFRATLEELEAAHLLLHVADASHPDLLQQ CHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH ISAVETILAEMELDRMPRLLILNKWDQLEAPARAELADAFPHALPVAAKTGEGCKPLLEQ HHHHHHHHHHHHHHHCCCEEEECCCHHCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHH LEMRLLHQATNIVTEISPSLN HHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MRQEHDISKPEGNLQGLKPSQLAALNRLFNRRFPAEDVYTVEQARELALLSRALGRQIGL CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCE LIDRKGRVQTVIVGKAGSILIPELPRGRSGGERLRGLRLLHTHLTPDGLSQEDLMDMLFL EEECCCCEEEEEEECCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH RLDAVIVLTVNPVGEPVQWQAAHLLPTNVNGQGYHLELPRPWDRTAAQMVGTAEALEKDL HHCEEEEEEECCCCCCCCCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHH SRRAESSHEAENRPRALLISVAALPRIMQERNLDELAELARTAGLAIAGRMVQRVPQVNP HHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC RLIMGRGKVAELEVLTLQGRADTLVFDGELSPAQLHNLADITERKVIDRTQLILDIFAQH EEEECCCCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVSRAGKLQVELAQLRYTQPRLVGKNRAMDRLMGGIGGRGPGETKLETDRRKIRERMARI HHHHCCCCEEEHHHHHCCCCHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH RKDLERLRRQRAFTRDRRSRQGIPLAALVGYTNAGKSTLLNTLTRSEVLVENKLFATLDP HHHHHHHHHHHHHHHHHHHCCCCCEEHEECCCCCCHHHHHHHHHHHHHHHHCCEEEEECC TTRRLRFPAEKELILADTVGFIRNLPKELMDAFRATLEELEAAHLLLHVADASHPDLLQQ CHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH ISAVETILAEMELDRMPRLLILNKWDQLEAPARAELADAFPHALPVAAKTGEGCKPLLEQ HHHHHHHHHHHHHHHCCCEEEECCCHHCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHH LEMRLLHQATNIVTEISPSLN HHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8248183; 7610040; 9278503; 2020545; 3040675 [H]