| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is ppc
Identifier: 218710807
GI number: 218710807
Start: 3040011
End: 3042641
Strand: Direct
Name: ppc
Synonym: VS_2890
Alternate gene names: 218710807
Gene position: 3040011-3042641 (Clockwise)
Preceding gene: 218710806
Following gene: 218710808
Centisome position: 92.14
GC content: 48.27
Gene sequence:
>2631_bases ATGAACGAGAAATACGCCGCTCTCAAGAGTAACGTAAGCATGCTGGGACGCTTGCTAGGTAACACAATCCAAGATGCACA TGGTGACGTTATCTTAGAGAAAGTGGAGACTATCCGTAAACTTTCCAAATCCGCCCGCGCAGGCAACAAAGCTGACCGTG ACAGCCTAGTTGAAGAAATCAAAAACCTGCCGAACGAACAACTCACTCCTGTTGCTCGTGCATTTAACCAATTTCTCAAC CTCACCAACATGGCAGAGCAATACCATACGATCTCTCGCCACTGTGAGGAGCATGTTTGTGAACCAGATGTGCTGCAATC TCTATTTTCCAAATTAAATCAGAATGACATCAGCAAGCTAGACGCGGCTCAAGCCGTTCGCGACCTGAACATTGAACTCG TTCTGACTGCACACCCAACAGAAATCACTCGTCGCACCATGATCAACAAGCTGGTTAAGATCAACGAGTGTCTGTCTAAA TTAGAATTAAGCGACCTATCACACAAAGAGCGTGCCAAGACAGAACGCCGCCTAGAGCAACTTATTGCTCAAGGTTGGCA CTCGGATGTGATTCGTCAGCAACGTCCTACTCCACTTGATGAAGCTAAGTGGGGCTTTGCGGTTGTCGAAAACTCACTTT GGGAAGCTGTGCCTGATTTCCTACGTGAAATGGATGGTCGATTAAAAGGTTACCTTGGTGAAGGCCTGCCAATTGATGCG CGCCCTGTTCATTTCTCATCTTGGATGGGTGGTGACCGCGATGGTAACCCATTCGTAACGCACACCATCACTAAAGAAGT ACTGCGTCTGTCTCGCTGGAAAGCCGCTGATCTGTACCTAGGTGACGTGAACGAGTTGATTACCGAACTGTCGATGACCA AGTGTAATGATGCCGTTCGTGAATTGGCTGGCGATGAGCACGAAGCTTACCGTGCAATCCTGAAGAGCCTACGTACTCTG CTCAACAACACGCTAGAAGTGCTTGATGCAAAACTGCACGACGCAGAAGTACCGAAGAAAGAAACTCTACAGAACATAGA CCAACTTTGGACACCACTTTACGCATGTTACCAATCGCTGCACGAATGTGGCATGGGCGTAATCGCGGACGGTTCTCTAC TTGATACGCTACGCCGCCTAAAAGCATTCGGCGTGCACTTGGTTCGTCTCGATGTTCGTCAAGAAAGTACTCGTCACTCA GATGTGCTATCTGAATTGACTCGCTACCTAGGCATTGGTGATTACGACCAATGGAGCGAGCAAGATAAGGTTGCTTTCTT AACCAATGAATTAAGCTCAAAGCGCCCACTGTTACCACGCGACTGGGAACCATCTGAGCAGGTCAAAGAGGTTTTAGACA CCTGTAAGGTCGTTGCTGCTCAACCTCGTGAAGCCTTTGGTGCTTACGTGATCTCTATGGCTCGTACTGCGTCGGATGTA TTGGCTGTACATTTGCTTCTACAAGAATGTGGTTGCCCGTACCGCATGGACGTATGTCCATTGTTCGAAACGCTAGACGA CTTGAACAACTCAGAAGCCGTAATGAAACAGCTAATGAGCATCGATTTATACCGTGGCTTTATCCAGAACCACCAAATGG TGATGATCGGATATTCTGACTCAGCTAAAGATGCCGGTGTAATGTCTGCAGGCTGGGCGCAATACGATGCAATGGACAAG CTAGTTAAGGCTTGTGAAGAAGAAGGCATTGAACTGACTCTATTCCACGGTCGTGGTGGTACGGTTGGTCGTGGTGGTGC GCCAGCGCACGCGGCTCTTCTTTCTCAGCCACCTAAAAGCTTGAAAGGCGGCTTACGTGTAACTGAACAAGGCGAAATGA TCCGCTTTAAACTTGGCTTGCCAGATGTTGCAGTTAATAGCTTCAACCTATACGCAAGTGCGATTCTAGAAGCGAACCTT CTGCCACCACCAGAGCCAAAACAAGAATGGCGCGACCTAATGGAAGTGCTGTCTGAAGTATCTTGCGAAGCTTACCGCAA CGTCGTTCGTGGTGAAGAGAAGTTTGTTCCTTACTTCCGCCAAGCGACGCCAGAGCTAGAGTTAGGCAAGTTACCTCTTG GTTCTCGTCCTGCGAAACGTAACCCGAACGGCGGCGTAGAAAGCCTACGTGCGATCCCATGGATCTTCTCATGGAGCCAA AACCGTTTGGTACTTCCTGCATGGTTAGGCGCTGGTGAAGCGATTCAATACTCTGTCGATCAAGGCCATCAAGCGCTACT TGAAGAGATGTGTCGTGAATGGCCATTCTTCTCGACTCGTCTAGGTATGTTGGAAATGGTGTACTCGAAGTGCAACATGG AAATAGCTAAGTACTACGACCAGCGACTTGTTGACGAAGAGCTATTACCTCTGGGTGAGTTACTGCGTGAACAGCTGCAA AAAGACATCAAAGCGGTGCTGAATGTAGAAAATAACGAGAACTTGATGCAAAGCGACCCTTGGGGACTTGAGTCAATTCG TCTACGTAACATCTATGTTGAGCCACTAAACATGCTTCAAGCGGAACTGCTTTACCGTACTCGTAAGTGTGAAACACCAC CAGCAGAGCTAGAAGAAGCGCTAATGGTGACGATTGCAGGTATTGCAGCAGGTATGCGAAACACTGGTTAA
Upstream 100 bases:
>100_bases AAACTTAGAATGCTTTATTTGACTAGATACAGCACTTTTCGCTAGATTGTGTACTTAACAAGGAACAATGGATGTAATTT TTTTACGAGGCAGGATGACA
Downstream 100 bases:
>100_bases TTAGTGATTCCTACTATAACCTGCCCAGCATTTACATCTACAAAAAGAACAAAAGGTCGCCATTGGCGGCCTTTTTATTT TGCCAAATGACCACTAGTGA
Product: phosphoenolpyruvate carboxylase
Products: NA
Alternate protein names: PEPC; PEPCase
Number of amino acids: Translated: 876; Mature: 876
Protein sequence:
>876_residues MNEKYAALKSNVSMLGRLLGNTIQDAHGDVILEKVETIRKLSKSARAGNKADRDSLVEEIKNLPNEQLTPVARAFNQFLN LTNMAEQYHTISRHCEEHVCEPDVLQSLFSKLNQNDISKLDAAQAVRDLNIELVLTAHPTEITRRTMINKLVKINECLSK LELSDLSHKERAKTERRLEQLIAQGWHSDVIRQQRPTPLDEAKWGFAVVENSLWEAVPDFLREMDGRLKGYLGEGLPIDA RPVHFSSWMGGDRDGNPFVTHTITKEVLRLSRWKAADLYLGDVNELITELSMTKCNDAVRELAGDEHEAYRAILKSLRTL LNNTLEVLDAKLHDAEVPKKETLQNIDQLWTPLYACYQSLHECGMGVIADGSLLDTLRRLKAFGVHLVRLDVRQESTRHS DVLSELTRYLGIGDYDQWSEQDKVAFLTNELSSKRPLLPRDWEPSEQVKEVLDTCKVVAAQPREAFGAYVISMARTASDV LAVHLLLQECGCPYRMDVCPLFETLDDLNNSEAVMKQLMSIDLYRGFIQNHQMVMIGYSDSAKDAGVMSAGWAQYDAMDK LVKACEEEGIELTLFHGRGGTVGRGGAPAHAALLSQPPKSLKGGLRVTEQGEMIRFKLGLPDVAVNSFNLYASAILEANL LPPPEPKQEWRDLMEVLSEVSCEAYRNVVRGEEKFVPYFRQATPELELGKLPLGSRPAKRNPNGGVESLRAIPWIFSWSQ NRLVLPAWLGAGEAIQYSVDQGHQALLEEMCREWPFFSTRLGMLEMVYSKCNMEIAKYYDQRLVDEELLPLGELLREQLQ KDIKAVLNVENNENLMQSDPWGLESIRLRNIYVEPLNMLQAELLYRTRKCETPPAELEEALMVTIAGIAAGMRNTG
Sequences:
>Translated_876_residues MNEKYAALKSNVSMLGRLLGNTIQDAHGDVILEKVETIRKLSKSARAGNKADRDSLVEEIKNLPNEQLTPVARAFNQFLN LTNMAEQYHTISRHCEEHVCEPDVLQSLFSKLNQNDISKLDAAQAVRDLNIELVLTAHPTEITRRTMINKLVKINECLSK LELSDLSHKERAKTERRLEQLIAQGWHSDVIRQQRPTPLDEAKWGFAVVENSLWEAVPDFLREMDGRLKGYLGEGLPIDA RPVHFSSWMGGDRDGNPFVTHTITKEVLRLSRWKAADLYLGDVNELITELSMTKCNDAVRELAGDEHEAYRAILKSLRTL LNNTLEVLDAKLHDAEVPKKETLQNIDQLWTPLYACYQSLHECGMGVIADGSLLDTLRRLKAFGVHLVRLDVRQESTRHS DVLSELTRYLGIGDYDQWSEQDKVAFLTNELSSKRPLLPRDWEPSEQVKEVLDTCKVVAAQPREAFGAYVISMARTASDV LAVHLLLQECGCPYRMDVCPLFETLDDLNNSEAVMKQLMSIDLYRGFIQNHQMVMIGYSDSAKDAGVMSAGWAQYDAMDK LVKACEEEGIELTLFHGRGGTVGRGGAPAHAALLSQPPKSLKGGLRVTEQGEMIRFKLGLPDVAVNSFNLYASAILEANL LPPPEPKQEWRDLMEVLSEVSCEAYRNVVRGEEKFVPYFRQATPELELGKLPLGSRPAKRNPNGGVESLRAIPWIFSWSQ NRLVLPAWLGAGEAIQYSVDQGHQALLEEMCREWPFFSTRLGMLEMVYSKCNMEIAKYYDQRLVDEELLPLGELLREQLQ KDIKAVLNVENNENLMQSDPWGLESIRLRNIYVEPLNMLQAELLYRTRKCETPPAELEEALMVTIAGIAAGMRNTG >Mature_876_residues MNEKYAALKSNVSMLGRLLGNTIQDAHGDVILEKVETIRKLSKSARAGNKADRDSLVEEIKNLPNEQLTPVARAFNQFLN LTNMAEQYHTISRHCEEHVCEPDVLQSLFSKLNQNDISKLDAAQAVRDLNIELVLTAHPTEITRRTMINKLVKINECLSK LELSDLSHKERAKTERRLEQLIAQGWHSDVIRQQRPTPLDEAKWGFAVVENSLWEAVPDFLREMDGRLKGYLGEGLPIDA RPVHFSSWMGGDRDGNPFVTHTITKEVLRLSRWKAADLYLGDVNELITELSMTKCNDAVRELAGDEHEAYRAILKSLRTL LNNTLEVLDAKLHDAEVPKKETLQNIDQLWTPLYACYQSLHECGMGVIADGSLLDTLRRLKAFGVHLVRLDVRQESTRHS DVLSELTRYLGIGDYDQWSEQDKVAFLTNELSSKRPLLPRDWEPSEQVKEVLDTCKVVAAQPREAFGAYVISMARTASDV LAVHLLLQECGCPYRMDVCPLFETLDDLNNSEAVMKQLMSIDLYRGFIQNHQMVMIGYSDSAKDAGVMSAGWAQYDAMDK LVKACEEEGIELTLFHGRGGTVGRGGAPAHAALLSQPPKSLKGGLRVTEQGEMIRFKLGLPDVAVNSFNLYASAILEANL LPPPEPKQEWRDLMEVLSEVSCEAYRNVVRGEEKFVPYFRQATPELELGKLPLGSRPAKRNPNGGVESLRAIPWIFSWSQ NRLVLPAWLGAGEAIQYSVDQGHQALLEEMCREWPFFSTRLGMLEMVYSKCNMEIAKYYDQRLVDEELLPLGELLREQLQ KDIKAVLNVENNENLMQSDPWGLESIRLRNIYVEPLNMLQAELLYRTRKCETPPAELEEALMVTIAGIAAGMRNTG
Specific function: Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
COG id: COG2352
COG function: function code C; Phosphoenolpyruvate carboxylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEPCase type 1 family
Homologues:
Organism=Escherichia coli, GI1790393, Length=885, Percent_Identity=64.0677966101695, Blast_Score=1135, Evalue=0.0,
Paralogues:
None
Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): CAPP_VIBSL (B7VLL5)
Other databases:
- EMBL: FM954972 - RefSeq: YP_002418428.1 - GeneID: 7162374 - GenomeReviews: FM954972_GR - KEGG: vsp:VS_2890 - HOGENOM: HBG351035 - OMA: AIPWVFG - ProtClustDB: PRK00009 - HAMAP: MF_00595 - InterPro: IPR021135 - InterPro: IPR018129 - InterPro: IPR022805 - InterPro: IPR015813 - PRINTS: PR00150
Pfam domain/function: PF00311 PEPcase; SSF51621 Pyrv/PenolPyrv_Kinase_cat
EC number: =4.1.1.31
Molecular weight: Translated: 98878; Mature: 98878
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: PS00781 PEPCASE_1; PS00393 PEPCASE_2
Important sites: ACT_SITE 138-138 ACT_SITE 543-543
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNEKYAALKSNVSMLGRLLGNTIQDAHGDVILEKVETIRKLSKSARAGNKADRDSLVEEI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH KNLPNEQLTPVARAFNQFLNLTNMAEQYHTISRHCEEHVCEPDVLQSLFSKLNQNDISKL HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHH DAAQAVRDLNIELVLTAHPTEITRRTMINKLVKINECLSKLELSDLSHKERAKTERRLEQ HHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH LIAQGWHSDVIRQQRPTPLDEAKWGFAVVENSLWEAVPDFLREMDGRLKGYLGEGLPIDA HHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC RPVHFSSWMGGDRDGNPFVTHTITKEVLRLSRWKAADLYLGDVNELITELSMTKCNDAVR CCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHEECCCHHHHHHHHHHHHHHHHHH ELAGDEHEAYRAILKSLRTLLNNTLEVLDAKLHDAEVPKKETLQNIDQLWTPLYACYQSL HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH HECGMGVIADGSLLDTLRRLKAFGVHLVRLDVRQESTRHSDVLSELTRYLGIGDYDQWSE HHCCCCEEECCHHHHHHHHHHHHCCHHEEEEHHHHHHHHHHHHHHHHHHCCCCCCHHCCC QDKVAFLTNELSSKRPLLPRDWEPSEQVKEVLDTCKVVAAQPREAFGAYVISMARTASDV CCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LAVHLLLQECGCPYRMDVCPLFETLDDLNNSEAVMKQLMSIDLYRGFIQNHQMVMIGYSD HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCC SAKDAGVMSAGWAQYDAMDKLVKACEEEGIELTLFHGRGGTVGRGGAPAHAALLSQPPKS CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCHH LKGGLRVTEQGEMIRFKLGLPDVAVNSFNLYASAILEANLLPPPEPKQEWRDLMEVLSEV HHCCCEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH SCEAYRNVVRGEEKFVPYFRQATPELELGKLPLGSRPAKRNPNGGVESLRAIPWIFSWSQ HHHHHHHHHCCCHHHCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHEECCC NRLVLPAWLGAGEAIQYSVDQGHQALLEEMCREWPFFSTRLGMLEMVYSKCNMEIAKYYD CCEEEEEECCCCCCEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHH QRLVDEELLPLGELLREQLQKDIKAVLNVENNENLMQSDPWGLESIRLRNIYVEPLNMLQ HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHEEEHHEEHHHHHHHH AELLYRTRKCETPPAELEEALMVTIAGIAAGMRNTG HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MNEKYAALKSNVSMLGRLLGNTIQDAHGDVILEKVETIRKLSKSARAGNKADRDSLVEEI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH KNLPNEQLTPVARAFNQFLNLTNMAEQYHTISRHCEEHVCEPDVLQSLFSKLNQNDISKL HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHH DAAQAVRDLNIELVLTAHPTEITRRTMINKLVKINECLSKLELSDLSHKERAKTERRLEQ HHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH LIAQGWHSDVIRQQRPTPLDEAKWGFAVVENSLWEAVPDFLREMDGRLKGYLGEGLPIDA HHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC RPVHFSSWMGGDRDGNPFVTHTITKEVLRLSRWKAADLYLGDVNELITELSMTKCNDAVR CCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHEECCCHHHHHHHHHHHHHHHHHH ELAGDEHEAYRAILKSLRTLLNNTLEVLDAKLHDAEVPKKETLQNIDQLWTPLYACYQSL HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH HECGMGVIADGSLLDTLRRLKAFGVHLVRLDVRQESTRHSDVLSELTRYLGIGDYDQWSE HHCCCCEEECCHHHHHHHHHHHHCCHHEEEEHHHHHHHHHHHHHHHHHHCCCCCCHHCCC QDKVAFLTNELSSKRPLLPRDWEPSEQVKEVLDTCKVVAAQPREAFGAYVISMARTASDV CCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LAVHLLLQECGCPYRMDVCPLFETLDDLNNSEAVMKQLMSIDLYRGFIQNHQMVMIGYSD HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCC SAKDAGVMSAGWAQYDAMDKLVKACEEEGIELTLFHGRGGTVGRGGAPAHAALLSQPPKS CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCHH LKGGLRVTEQGEMIRFKLGLPDVAVNSFNLYASAILEANLLPPPEPKQEWRDLMEVLSEV HHCCCEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH SCEAYRNVVRGEEKFVPYFRQATPELELGKLPLGSRPAKRNPNGGVESLRAIPWIFSWSQ HHHHHHHHHCCCHHHCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHEECCC NRLVLPAWLGAGEAIQYSVDQGHQALLEEMCREWPFFSTRLGMLEMVYSKCNMEIAKYYD CCEEEEEECCCCCCEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHH QRLVDEELLPLGELLREQLQKDIKAVLNVENNENLMQSDPWGLESIRLRNIYVEPLNMLQ HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHEEEHHEEHHHHHHHH AELLYRTRKCETPPAELEEALMVTIAGIAAGMRNTG HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA