| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is yhjE [H]
Identifier: 213691276
GI number: 213691276
Start: 417749
End: 419113
Strand: Direct
Name: yhjE [H]
Synonym: Blon_0360
Alternate gene names: 213691276
Gene position: 417749-419113 (Clockwise)
Preceding gene: 213691275
Following gene: 213691277
Centisome position: 14.75
GC content: 63.59
Gene sequence:
>1365_bases ATGCGCACGCCGCACCGGGGTTTATCCGCAAGAGGAGAAAGAAGAAGGACAATGTCTGCAAGCGCATCCGCGACTGTGGC CAAACCGGTGAAGAAGGATTCCGTTCCCGAGATCATCGCCGCCTCGATGGTGGGCACCGCCATCGAATTCTACGACAACT ACTGCTATTCCATCGCAGCCGCCAGCTATTTCGGCGCGATTTTCTTCACGGACGTCGCCAAGTCCAACCAGGCCCTGGCC ACGCTGATGGCTTTCGTGACCTTCGCCGTATCGTTCCTCGCCCGCCCGTTCGGTTCCATGTTGTTCGGCCACTTCGGCGA CAAGCTCGGCCGCAAGAAGACGCTGGTCATCGCCCTGATGACCATGGGCATCGCCACCTTCCTGGTCGGATGCCTGCCCG GCTATGAGCAGATCGGCGCATGGTCCATCGTGATCCTGTGCATCTGCCGCGCCTGCCAGGGCGTGGGGCTCGCCGGTGAA TGGTCCGGCGCGGCCTTGGTCGCCACCGAGAACGCCCCGGCCGACAAGCGCGCCCTGTATGGCTCCTTCCCGAACCTGGG CGCCCCGATCGGCTTCTTCTGCGCCTATGGTCTGAACCTGGTGCTTGAGGCCAACCTGAGCCAGGAGCAGATGCTCGCCT TCGGCTGGCGCATCCCCTTCCTGTGCTCCGCCGTGCTGGTGGCCATCGGCCTGTACGTGCGTGCCCGCATGTCCGAGACC CCGGTGTTCAAGAAGGCCTCCGAGGAGAAGCGCACCTCCAAGCACCCGCTGCGTGACCTGCTGCCGTACTGGAAGGAGGT CCTGCTCGGCACCGTGGCCATGGGCATCACCTACACCCTGTTCTACGTGCTCGGCACCTGGTCGTTGGCCTACGGCGTCA AGGGCCTGAAGTTCACCCAAAGCGAGTACCTGCTTATGCAGATGTGCTCCGTGGTGTTCTTCGCCATCTTCATCGTGGTC TCGTGCGTGTATGCCGACAAGGTGGGTCGCAAGAAGGTCATGATCACCGTGACCGCCGCCGCCTTGGTGTTCAGCTTCTT CGTGCCGATACTGCTGGTGCACTCCGTCTCCCACATCATGATCTTCCTGTGCGTCGGCTTCGTGATCATGGGCGGCCTGT TCGGCCCCTGCGGCGCGTACCTGCCCGAGCTGTTCCCGGTGCACGTGCGCTACTCCGGCGCCGGCCTGAGCTACAACCTC GCCGCCATCTTCGGCGGCGCGTTCGCCCCGACCATCGCCCAGGCGCTGGTCTCCTCCGAGTTCGGCGTGGCCGGCGTGGG CTGGTACATGGCCATCATGGCCGCGCTCGCCCTGCTCGCCCTGTTCCTGATCAAGGAAAGCAAGGACAAGGACTACGAGC TCTGA
Upstream 100 bases:
>100_bases GGCGATGTGCGGGAGCTCATCGCTGGGGCCACAAGCCGTGCCAGTCCTTCTCCCGTATCCCGGTCGCTGTGCTTGATTCG TCCGTCATCGCGAACACGTG
Downstream 100 bases:
>100_bases TCCCCGCCCGTCCGCGGCGGTCCGCGACAGGGGGCATCGCCCGGCAAGGGCGGTGCCCCTTTCGTATGCCGGCCGATAAG ATGAACAGTAGGCGAACTTA
Product: major facilitator superfamily MFS_1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 454; Mature: 454
Protein sequence:
>454_residues MRTPHRGLSARGERRRTMSASASATVAKPVKKDSVPEIIAASMVGTAIEFYDNYCYSIAAASYFGAIFFTDVAKSNQALA TLMAFVTFAVSFLARPFGSMLFGHFGDKLGRKKTLVIALMTMGIATFLVGCLPGYEQIGAWSIVILCICRACQGVGLAGE WSGAALVATENAPADKRALYGSFPNLGAPIGFFCAYGLNLVLEANLSQEQMLAFGWRIPFLCSAVLVAIGLYVRARMSET PVFKKASEEKRTSKHPLRDLLPYWKEVLLGTVAMGITYTLFYVLGTWSLAYGVKGLKFTQSEYLLMQMCSVVFFAIFIVV SCVYADKVGRKKVMITVTAAALVFSFFVPILLVHSVSHIMIFLCVGFVIMGGLFGPCGAYLPELFPVHVRYSGAGLSYNL AAIFGGAFAPTIAQALVSSEFGVAGVGWYMAIMAALALLALFLIKESKDKDYEL
Sequences:
>Translated_454_residues MRTPHRGLSARGERRRTMSASASATVAKPVKKDSVPEIIAASMVGTAIEFYDNYCYSIAAASYFGAIFFTDVAKSNQALA TLMAFVTFAVSFLARPFGSMLFGHFGDKLGRKKTLVIALMTMGIATFLVGCLPGYEQIGAWSIVILCICRACQGVGLAGE WSGAALVATENAPADKRALYGSFPNLGAPIGFFCAYGLNLVLEANLSQEQMLAFGWRIPFLCSAVLVAIGLYVRARMSET PVFKKASEEKRTSKHPLRDLLPYWKEVLLGTVAMGITYTLFYVLGTWSLAYGVKGLKFTQSEYLLMQMCSVVFFAIFIVV SCVYADKVGRKKVMITVTAAALVFSFFVPILLVHSVSHIMIFLCVGFVIMGGLFGPCGAYLPELFPVHVRYSGAGLSYNL AAIFGGAFAPTIAQALVSSEFGVAGVGWYMAIMAALALLALFLIKESKDKDYEL >Mature_454_residues MRTPHRGLSARGERRRTMSASASATVAKPVKKDSVPEIIAASMVGTAIEFYDNYCYSIAAASYFGAIFFTDVAKSNQALA TLMAFVTFAVSFLARPFGSMLFGHFGDKLGRKKTLVIALMTMGIATFLVGCLPGYEQIGAWSIVILCICRACQGVGLAGE WSGAALVATENAPADKRALYGSFPNLGAPIGFFCAYGLNLVLEANLSQEQMLAFGWRIPFLCSAVLVAIGLYVRARMSET PVFKKASEEKRTSKHPLRDLLPYWKEVLLGTVAMGITYTLFYVLGTWSLAYGVKGLKFTQSEYLLMQMCSVVFFAIFIVV SCVYADKVGRKKVMITVTAAALVFSFFVPILLVHSVSHIMIFLCVGFVIMGGLFGPCGAYLPELFPVHVRYSGAGLSYNL AAIFGGAFAPTIAQALVSSEFGVAGVGWYMAIMAALALLALFLIKESKDKDYEL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Escherichia coli, GI1789941, Length=426, Percent_Identity=47.4178403755869, Blast_Score=333, Evalue=1e-92, Organism=Escherichia coli, GI1788292, Length=394, Percent_Identity=34.2639593908629, Blast_Score=212, Evalue=3e-56, Organism=Escherichia coli, GI1790550, Length=428, Percent_Identity=30.3738317757009, Blast_Score=201, Evalue=8e-53, Organism=Escherichia coli, GI1788942, Length=443, Percent_Identity=30.2483069977427, Blast_Score=145, Evalue=4e-36, Organism=Escherichia coli, GI87082404, Length=396, Percent_Identity=24.7474747474747, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI87082231, Length=196, Percent_Identity=24.4897959183673, Blast_Score=65, Evalue=8e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004736 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR005828 - InterPro: IPR005829 [H]
Pfam domain/function: PF07690 MFS_1; PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 49126; Mature: 49126
Theoretical pI: Translated: 9.14; Mature: 9.14
Prosite motif: PS00359 RIBOSOMAL_L11 ; PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTPHRGLSARGERRRTMSASASATVAKPVKKDSVPEIIAASMVGTAIEFYDNYCYSIAA CCCCCCCCCCCCHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH ASYFGAIFFTDVAKSNQALATLMAFVTFAVSFLARPFGSMLFGHFGDKLGRKKTLVIALM HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH TMGIATFLVGCLPGYEQIGAWSIVILCICRACQGVGLAGEWSGAALVATENAPADKRALY HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHC GSFPNLGAPIGFFCAYGLNLVLEANLSQEQMLAFGWRIPFLCSAVLVAIGLYVRARMSET CCCCCCCCCHHHHHHHCCCEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC PVFKKASEEKRTSKHPLRDLLPYWKEVLLGTVAMGITYTLFYVLGTWSLAYGVKGLKFTQ CCHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECH SEYLLMQMCSVVFFAIFIVVSCVYADKVGRKKVMITVTAAALVFSFFVPILLVHSVSHIM HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHH IFLCVGFVIMGGLFGPCGAYLPELFPVHVRYSGAGLSYNLAAIFGGAFAPTIAQALVSSE HHHHHHHHHHCCCCCHHHHHHHHHCEEEEEEECCCCCEEHHHHHCCHHHHHHHHHHHHCC FGVAGVGWYMAIMAALALLALFLIKESKDKDYEL CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MRTPHRGLSARGERRRTMSASASATVAKPVKKDSVPEIIAASMVGTAIEFYDNYCYSIAA CCCCCCCCCCCCHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH ASYFGAIFFTDVAKSNQALATLMAFVTFAVSFLARPFGSMLFGHFGDKLGRKKTLVIALM HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH TMGIATFLVGCLPGYEQIGAWSIVILCICRACQGVGLAGEWSGAALVATENAPADKRALY HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHC GSFPNLGAPIGFFCAYGLNLVLEANLSQEQMLAFGWRIPFLCSAVLVAIGLYVRARMSET CCCCCCCCCHHHHHHHCCCEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC PVFKKASEEKRTSKHPLRDLLPYWKEVLLGTVAMGITYTLFYVLGTWSLAYGVKGLKFTQ CCHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECH SEYLLMQMCSVVFFAIFIVVSCVYADKVGRKKVMITVTAAALVFSFFVPILLVHSVSHIM HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHH IFLCVGFVIMGGLFGPCGAYLPELFPVHVRYSGAGLSYNLAAIFGGAFAPTIAQALVSSE HHHHHHHHHHCCCCCHHHHHHHHHCEEEEEEECCCCCEEHHHHHCCHHHHHHHHHHHHCC FGVAGVGWYMAIMAALALLALFLIKESKDKDYEL CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]