| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228713
Identifier: 21228713
GI number: 21228713
Start: 3108670
End: 3110133
Strand: Reverse
Name: 21228713
Synonym: MM_2611
Alternate gene names: NA
Gene position: 3110133-3108670 (Counterclockwise)
Preceding gene: 21228714
Following gene: 21228712
Centisome position: 75.92
GC content: 49.04
Gene sequence:
>1464_bases TTGCCCATGAGTAACGAAGGTCGGGCTGTTGAGAAAGAAAAGATAAAATCTGCATATGATGTCGTGATTATAGGAGCAGG ACCTGCAGGGATGTTTGCGGCTTACGAACTTGCAGCCGGAAAGATGGAAATTCTTGTTATTGATATGGGCAGGGACATTG ATAAGCGCTCCTGCCCTATGAAAGCCCTTAGCTACTGCAAGCACTGTGCCCCGTGCGAGATAATGTGCGGGGTTGGAGGC TGCGGGACATTTTCTGACGGGACACTTAACCTTCGGCCTGACATAGGAGGTGACCTGGCAGCCCTTACCGGAGACCAGAC TGAAGCCTGGGAGCTGGTTGACAGGGTCGATAAGGTTTTCCTTAAATTCGGTGCACCCCAGACTGCCCTTCTTACAGAAG GCCCGGAAGTAGAGGAATTAAAACGCAGGGCTGCTTCTGTCGGAGCCCGGTTTATAGAGATCAAACAGAGGCATATAGGC TCGGACAATGCACCTGCACTCATCGGGCGCTTCAAACAGGATCTTGTTGATAAAGGAGTGGATTTCCTGATTGAAACCGA AGTCCATGACCTTTTGATAGAAGGAAAGGAATGCAAAGGAGTTATACTCTCAGGCGGGAGGGTTATCCGCGCAAACTATG TGCTCCTGTCTCCAGGAAGAAGGGGCTGCAACTGGGTTTCGGAAATGATAGAAAAACATGACCTGAAAGCCCGTTACGGC GGAATTGACATAGGGGTCAGAGTCGAAGTCCCTGCTATTATTATGGACCCTGTTACTAAAATCAACCGTGACCCTAAATT CCATATCCAGAGCCGCCGATATGACGACTTTGTAAGGACATTCTGCACCAACAGGCGCGGTTTTGTCGTGAAAGAAGAAT ACGAGGACTTTATTGCAACAAACGGGCATTCCATGGCAAATAAGGAGTCAGAAAATACCAACTTTGCATTCCTTGTCCGT ATAGAACTTACAGAACCCATGGAAAACACTACAAAATACGCCCGCTCAATTGCGAAACTCGCGACAACGATCGGAGGAGG AAAACCAGTCCTGCAGCGCATGGGAGACCTGAGGCGCGGACGGCGGTCAACAAAAGAGCGCCTTGCCAGAAACCTGGTCA TAAATACATTAAAAGACGTGACACCTGGCGATATCTCAATGGCTCTTCCTCACAGGATAGTCATGGACATAATTGAAGGC CTTGAGACCTTAAACGAGATTATCCCCGGCGTTGCTTCGGACTCGACCCTGCTTTACGCTCCTGAAGTCAAGTTCTATGC CATGCACCTGGACGTGGACCGCCATATGGAAACCAGCATCAAAAACCTCTTTGCAGCAGGAGACGGTGCAGGCCTCTCAA GGGATATAGTAAATGCCGCTGCAACCGGAATTATGGCTGCAGAAGGGATTATGAAAAAAGCCGGAAAGGGTCAGGATATC CAGGAAGAAGAAAACAGATTTTGA
Upstream 100 bases:
>100_bases AAATAATGTGAAGTTCGCTGCATTTTATGAAAAAGTTTTTATTGATAAGATTAAGGAAATTAATAAGTTTTTCTGATGTT TAATCAAAAACTAGGGGGAG
Downstream 100 bases:
>100_bases AGCTCTGAGAATAGAAAAATTATGCTGCTGTTTTATTTAATTTTGTTAAAAAAGTTATTTAGCTTTGTTAGAAAAGGTTG CGTTCCCATCTGAAATACCT
Product: hypothetical protein
Products: NA
Alternate protein names: ORF1 [H]
Number of amino acids: Translated: 487; Mature: 486
Protein sequence:
>487_residues MPMSNEGRAVEKEKIKSAYDVVIIGAGPAGMFAAYELAAGKMEILVIDMGRDIDKRSCPMKALSYCKHCAPCEIMCGVGG CGTFSDGTLNLRPDIGGDLAALTGDQTEAWELVDRVDKVFLKFGAPQTALLTEGPEVEELKRRAASVGARFIEIKQRHIG SDNAPALIGRFKQDLVDKGVDFLIETEVHDLLIEGKECKGVILSGGRVIRANYVLLSPGRRGCNWVSEMIEKHDLKARYG GIDIGVRVEVPAIIMDPVTKINRDPKFHIQSRRYDDFVRTFCTNRRGFVVKEEYEDFIATNGHSMANKESENTNFAFLVR IELTEPMENTTKYARSIAKLATTIGGGKPVLQRMGDLRRGRRSTKERLARNLVINTLKDVTPGDISMALPHRIVMDIIEG LETLNEIIPGVASDSTLLYAPEVKFYAMHLDVDRHMETSIKNLFAAGDGAGLSRDIVNAAATGIMAAEGIMKKAGKGQDI QEEENRF
Sequences:
>Translated_487_residues MPMSNEGRAVEKEKIKSAYDVVIIGAGPAGMFAAYELAAGKMEILVIDMGRDIDKRSCPMKALSYCKHCAPCEIMCGVGG CGTFSDGTLNLRPDIGGDLAALTGDQTEAWELVDRVDKVFLKFGAPQTALLTEGPEVEELKRRAASVGARFIEIKQRHIG SDNAPALIGRFKQDLVDKGVDFLIETEVHDLLIEGKECKGVILSGGRVIRANYVLLSPGRRGCNWVSEMIEKHDLKARYG GIDIGVRVEVPAIIMDPVTKINRDPKFHIQSRRYDDFVRTFCTNRRGFVVKEEYEDFIATNGHSMANKESENTNFAFLVR IELTEPMENTTKYARSIAKLATTIGGGKPVLQRMGDLRRGRRSTKERLARNLVINTLKDVTPGDISMALPHRIVMDIIEG LETLNEIIPGVASDSTLLYAPEVKFYAMHLDVDRHMETSIKNLFAAGDGAGLSRDIVNAAATGIMAAEGIMKKAGKGQDI QEEENRF >Mature_486_residues PMSNEGRAVEKEKIKSAYDVVIIGAGPAGMFAAYELAAGKMEILVIDMGRDIDKRSCPMKALSYCKHCAPCEIMCGVGGC GTFSDGTLNLRPDIGGDLAALTGDQTEAWELVDRVDKVFLKFGAPQTALLTEGPEVEELKRRAASVGARFIEIKQRHIGS DNAPALIGRFKQDLVDKGVDFLIETEVHDLLIEGKECKGVILSGGRVIRANYVLLSPGRRGCNWVSEMIEKHDLKARYGG IDIGVRVEVPAIIMDPVTKINRDPKFHIQSRRYDDFVRTFCTNRRGFVVKEEYEDFIATNGHSMANKESENTNFAFLVRI ELTEPMENTTKYARSIAKLATTIGGGKPVLQRMGDLRRGRRSTKERLARNLVINTLKDVTPGDISMALPHRIVMDIIEGL ETLNEIIPGVASDSTLLYAPEVKFYAMHLDVDRHMETSIKNLFAAGDGAGLSRDIVNAAATGIMAAEGIMKKAGKGQDIQ EEENRF
Specific function: Unknown
COG id: COG2509
COG function: function code R; Uncharacterized FAD-dependent dehydrogenases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004792 [H]
Pfam domain/function: PF03486 HI0933_like [H]
EC number: NA
Molecular weight: Translated: 53626; Mature: 53494
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPMSNEGRAVEKEKIKSAYDVVIIGAGPAGMFAAYELAAGKMEILVIDMGRDIDKRSCPM CCCCCCCCCHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCH KALSYCKHCAPCEIMCGVGGCGTFSDGTLNLRPDIGGDLAALTGDQTEAWELVDRVDKVF HHHHHHHCCCCCEEEECCCCCCCCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHH LKFGAPQTALLTEGPEVEELKRRAASVGARFIEIKQRHIGSDNAPALIGRFKQDLVDKGV HHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC DFLIETEVHDLLIEGKECKGVILSGGRVIRANYVLLSPGRRGCNWVSEMIEKHDLKARYG CEEEECCHHHHHCCCCCCCEEEEECCEEEEEEEEEECCCCCCHHHHHHHHHHHCCHHHCC GIDIGVRVEVPAIIMDPVTKINRDPKFHIQSRRYDDFVRTFCTNRRGFVVKEEYEDFIAT CEEEEEEEECCCEEECCHHHCCCCCCEEECCCCHHHHHHHHHCCCCCEEEHHHHHHHHHC NGHSMANKESENTNFAFLVRIELTEPMENTTKYARSIAKLATTIGGGKPVLQRMGDLRRG CCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH RRSTKERLARNLVINTLKDVTPGDISMALPHRIVMDIIEGLETLNEIIPGVASDSTLLYA HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE PEVKFYAMHLDVDRHMETSIKNLFAAGDGAGLSRDIVNAAATGIMAAEGIMKKAGKGQDI CCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC QEEENRF CHHHCCC >Mature Secondary Structure PMSNEGRAVEKEKIKSAYDVVIIGAGPAGMFAAYELAAGKMEILVIDMGRDIDKRSCPM CCCCCCCCHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCH KALSYCKHCAPCEIMCGVGGCGTFSDGTLNLRPDIGGDLAALTGDQTEAWELVDRVDKVF HHHHHHHCCCCCEEEECCCCCCCCCCCEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHH LKFGAPQTALLTEGPEVEELKRRAASVGARFIEIKQRHIGSDNAPALIGRFKQDLVDKGV HHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC DFLIETEVHDLLIEGKECKGVILSGGRVIRANYVLLSPGRRGCNWVSEMIEKHDLKARYG CEEEECCHHHHHCCCCCCCEEEEECCEEEEEEEEEECCCCCCHHHHHHHHHHHCCHHHCC GIDIGVRVEVPAIIMDPVTKINRDPKFHIQSRRYDDFVRTFCTNRRGFVVKEEYEDFIAT CEEEEEEEECCCEEECCHHHCCCCCCEEECCCCHHHHHHHHHCCCCCEEEHHHHHHHHHC NGHSMANKESENTNFAFLVRIELTEPMENTTKYARSIAKLATTIGGGKPVLQRMGDLRRG CCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH RRSTKERLARNLVINTLKDVTPGDISMALPHRIVMDIIEGLETLNEIIPGVASDSTLLYA HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE PEVKFYAMHLDVDRHMETSIKNLFAAGDGAGLSRDIVNAAATGIMAAEGIMKKAGKGQDI CCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC QEEENRF CHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8396545 [H]