| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is yprA [H]
Identifier: 21228714
GI number: 21228714
Start: 3110849
End: 3113587
Strand: Reverse
Name: yprA [H]
Synonym: MM_2612
Alternate gene names: 21228714
Gene position: 3113587-3110849 (Counterclockwise)
Preceding gene: 21228715
Following gene: 21228713
Centisome position: 76.01
GC content: 48.81
Gene sequence:
>2739_bases ATGGAAATTTCCTGCCTGCTGAATGAAATAAAAGCTTCCATCCGCTATGAAAACCAGATAGTCCATATTGAAGAAACACC AGCAAGGGATGCATGTTATGCGCCTCTTGAACTGGAAGTACGGATAAAAGCTGCACTTTCAGGCACAGGAATTGAAGCCC TTTATTCCCATCAGGCTGAAGCTATAGAAAAGGTAAGGGAAGGAAAAGACCTGGTGCTCTGTACAAGCACGGCAAGCGGA AAATCCCTTACTTACATGATACCTGTTTTTGAAGCTGTCCTGAAGGACCCTGAGGCTACTTCCCTTTATATTTCTCCCCT GAACGCCCTTGTAAATGACCAGCTAAAAGCTTTCCTCGAATTTGAAGGTGCATTAAATTCCGGTGCAGGCATAGCCCGCT ATACAGGTGCTCTGAGCGCGGACCAGAAGAGAAAAATCAGGGATGGAAAGACGAATATTGTGTTTACGAACCCTGAGATG GTGCACATGAGTTTTCTTGCCTGGCACCACCTGTGGAGGCGCTTTTTTTCAAACCTCAGGTTTATTGTTGTTGATGAGAG CCATTACTACAGGGGAGTTATAGGGAGCAATATGGCAAACGTGCTGAGAAGGCTCCTCAGGGTTGCGGAATATTACGGGG CTTCCCCGCAGTTTATCTGCTGCTCGGCGACTATAGGGAACCCTGAAGACCACACTGAAACCCTTCTGGGAAGGGAAGCC GTGGTGGTTGAAAATAACGGGTCTTTACAGGGGCCCCAGAAGTTTGTGTTCTGGAACCCGCCTCTTTACATGAACGGGAG AGGATGCACAGTAAGGAGAAGCAGCTTTTCCGAAGCCTCTGCCCTTTTCACGCGAGCAGTCCAGGCAGGACTCCAGACAC TGGCTTTTACCCGGTCAAGGCAGGGTGTGGAGAGGATGTACAGGACCTGCATGGAACTTTTAAGGGACCGGGAGCTTCCC TCTGCAATCTGCCCTTACAGGAGCGGATATTTTGACCGGGAAAGAGAAGAAATCGAAAGGAAAATGAATTCGGGAGAGCT CAGAGGCGTTATTTCCACAAATGCCCTCGAACTCGGGATAGATATAGGGGGGCTTGATGTCTGCATCCTTGACGGCTATC CGGGAACGGTAATGAGTGCAAGGCAGCAGGCAGGAAGGGCGGGCCGGAGCGGGAATGAAAGCCTTGTCCTGATGGTAGCC GGGACAAATGCCCTCGACCAGTACTATATGCGAAACCCGGCTGACTTTTTTGCAAGAAGCAGTGAAAACGCCGTTCTTAA CCCCAAAAATCCCTACATCCTTGCAGGGCACCTGCTCTGCGCAGCAAAAGAAATACCTCTCAGGGAATCGGATGAAAAGT ATTTTGGCGGCGGATACTCAAGAGTTGTTGAACTCCTGGAAGCGGAAGGGCTGCTTGCTGGTAGTGACATGAAATATTCT ACCGATCCTTTCCCTTATAAACAGGTCTCCCTGAGGGGAATAGATAATAATACTTACTCTCTGCTCGCCTTTGAGGGGGA AAGGAGCTTTCCGATAGAAAAAGACATTGAAGAGACCCTGGCTTTCCGGGAGTGCCATCCGGGTGCAGTCTACATTCACA GGGGAGAATCCTTTTACATAAACAGGATAGACCATGAGAAAAGGGAAATTCACGCTATAAAGACGCACGACAGCTATTAT ACAAAACCGATGATAGACTCGTCAGTCGTGGTCCAGGAGACTTATGCAGCAAAACCTCTTCTGCACGCCCCTGAGGTGGA GGTAGGGCTTGGGGAAGTTGAGGTAACGGACAGGATAGCAGGTTACAGGAAAATAAGGACCCACAGCGACGAGACGATGA GCGCTCATGAAATTGAAATGCCTCCCATTACCCTCCAGACTGTCGCGCTCTGGCTCAAACTGCCCGACAGGCTGCAGGAA ATGATAGGAGACCATAAACTTGATTTTGCAGGAGGGATCCATGCTGTTGAACATGCAATAATTTCCATGTACCCCCTGCA CCTGCTTGTGGACAGGAGCGATGTAGGAGGGGTTTCAACTCCTTCTCATCCTGACCTTGGGAGTAAAAGCGGGATCTTCA TATATGACGGACACAGGGGAGGAGTCGGGTATGCCGAAAAAGGTTATGACCTGATTGAAGAGGTACTGGAAGGCACCTTA AAAGCCATTGAAAGCTGCCCCTGTGAAAGTGGCTGCCCTGGCTGTATACAGTCCCCCAAATGTGGGAACAATAATGAACC TCTAGATAAACACGCGGCAATAATGCTCCTGCACGAGCTCCTTGGAAAAGCCCCCTATATCCCACCCGAGAAAAAAGAAA AGCACCTTTCTGAAGCCAGAGCCCGGAAAACAATCCCGCAGGAAAGAAAAAGTTCAGGAGATGCCCTTGACAGGGTAAGA AGGCAGCTCAGGAGGGAGAATATAAATCAGGAGCCTCAGGCAGGGAAGGAAAAAAAGGAAAAGACTTTCATTGCCACGGA TGAAAATGGGGGAATGATCGGAGTTGTTTCAGCCCCTACCCCGGAAAAAGCCGCAGCAAAAACATTTCATAAGAAACTCG CAGGGCAACAGGGAGCCACAAAAGAAAAGCCTTTAGAGATAAGGATCAGAGACCTTGGAGCAGGCAGTGATTATCATTTC AGGGCATGGACCGAGCTTTTTGAAGCCGCAGAAAACGGGGATCCTGAAAGTAAAGAGAAAAAAGCAGTCAAAAAATTGTT TATTCGAAAAATGAGCTGA
Upstream 100 bases:
>100_bases AGTGAAATGAAAGTGAAATGAAAGTGAAACAAAAGTGAAATGAAAGTGAAACAAAAGTGAAATGAAAGTGAAACAAAAGT AGAAAACGTGGAGTAGAAAA
Downstream 100 bases:
>100_bases AGAAGATTTTTCCAAAGTATTTTCGTTTTTCTGAGTTTTTTCAACTTTTCTTTTCGAACTTTTCTTTTCGAACTTTTCTT TTCTGGCAAGGATATAACTT
Product: putative ATP-dependent helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 912; Mature: 912
Protein sequence:
>912_residues MEISCLLNEIKASIRYENQIVHIEETPARDACYAPLELEVRIKAALSGTGIEALYSHQAEAIEKVREGKDLVLCTSTASG KSLTYMIPVFEAVLKDPEATSLYISPLNALVNDQLKAFLEFEGALNSGAGIARYTGALSADQKRKIRDGKTNIVFTNPEM VHMSFLAWHHLWRRFFSNLRFIVVDESHYYRGVIGSNMANVLRRLLRVAEYYGASPQFICCSATIGNPEDHTETLLGREA VVVENNGSLQGPQKFVFWNPPLYMNGRGCTVRRSSFSEASALFTRAVQAGLQTLAFTRSRQGVERMYRTCMELLRDRELP SAICPYRSGYFDREREEIERKMNSGELRGVISTNALELGIDIGGLDVCILDGYPGTVMSARQQAGRAGRSGNESLVLMVA GTNALDQYYMRNPADFFARSSENAVLNPKNPYILAGHLLCAAKEIPLRESDEKYFGGGYSRVVELLEAEGLLAGSDMKYS TDPFPYKQVSLRGIDNNTYSLLAFEGERSFPIEKDIEETLAFRECHPGAVYIHRGESFYINRIDHEKREIHAIKTHDSYY TKPMIDSSVVVQETYAAKPLLHAPEVEVGLGEVEVTDRIAGYRKIRTHSDETMSAHEIEMPPITLQTVALWLKLPDRLQE MIGDHKLDFAGGIHAVEHAIISMYPLHLLVDRSDVGGVSTPSHPDLGSKSGIFIYDGHRGGVGYAEKGYDLIEEVLEGTL KAIESCPCESGCPGCIQSPKCGNNNEPLDKHAAIMLLHELLGKAPYIPPEKKEKHLSEARARKTIPQERKSSGDALDRVR RQLRRENINQEPQAGKEKKEKTFIATDENGGMIGVVSAPTPEKAAAKTFHKKLAGQQGATKEKPLEIRIRDLGAGSDYHF RAWTELFEAAENGDPESKEKKAVKKLFIRKMS
Sequences:
>Translated_912_residues MEISCLLNEIKASIRYENQIVHIEETPARDACYAPLELEVRIKAALSGTGIEALYSHQAEAIEKVREGKDLVLCTSTASG KSLTYMIPVFEAVLKDPEATSLYISPLNALVNDQLKAFLEFEGALNSGAGIARYTGALSADQKRKIRDGKTNIVFTNPEM VHMSFLAWHHLWRRFFSNLRFIVVDESHYYRGVIGSNMANVLRRLLRVAEYYGASPQFICCSATIGNPEDHTETLLGREA VVVENNGSLQGPQKFVFWNPPLYMNGRGCTVRRSSFSEASALFTRAVQAGLQTLAFTRSRQGVERMYRTCMELLRDRELP SAICPYRSGYFDREREEIERKMNSGELRGVISTNALELGIDIGGLDVCILDGYPGTVMSARQQAGRAGRSGNESLVLMVA GTNALDQYYMRNPADFFARSSENAVLNPKNPYILAGHLLCAAKEIPLRESDEKYFGGGYSRVVELLEAEGLLAGSDMKYS TDPFPYKQVSLRGIDNNTYSLLAFEGERSFPIEKDIEETLAFRECHPGAVYIHRGESFYINRIDHEKREIHAIKTHDSYY TKPMIDSSVVVQETYAAKPLLHAPEVEVGLGEVEVTDRIAGYRKIRTHSDETMSAHEIEMPPITLQTVALWLKLPDRLQE MIGDHKLDFAGGIHAVEHAIISMYPLHLLVDRSDVGGVSTPSHPDLGSKSGIFIYDGHRGGVGYAEKGYDLIEEVLEGTL KAIESCPCESGCPGCIQSPKCGNNNEPLDKHAAIMLLHELLGKAPYIPPEKKEKHLSEARARKTIPQERKSSGDALDRVR RQLRRENINQEPQAGKEKKEKTFIATDENGGMIGVVSAPTPEKAAAKTFHKKLAGQQGATKEKPLEIRIRDLGAGSDYHF RAWTELFEAAENGDPESKEKKAVKKLFIRKMS >Mature_912_residues MEISCLLNEIKASIRYENQIVHIEETPARDACYAPLELEVRIKAALSGTGIEALYSHQAEAIEKVREGKDLVLCTSTASG KSLTYMIPVFEAVLKDPEATSLYISPLNALVNDQLKAFLEFEGALNSGAGIARYTGALSADQKRKIRDGKTNIVFTNPEM VHMSFLAWHHLWRRFFSNLRFIVVDESHYYRGVIGSNMANVLRRLLRVAEYYGASPQFICCSATIGNPEDHTETLLGREA VVVENNGSLQGPQKFVFWNPPLYMNGRGCTVRRSSFSEASALFTRAVQAGLQTLAFTRSRQGVERMYRTCMELLRDRELP SAICPYRSGYFDREREEIERKMNSGELRGVISTNALELGIDIGGLDVCILDGYPGTVMSARQQAGRAGRSGNESLVLMVA GTNALDQYYMRNPADFFARSSENAVLNPKNPYILAGHLLCAAKEIPLRESDEKYFGGGYSRVVELLEAEGLLAGSDMKYS TDPFPYKQVSLRGIDNNTYSLLAFEGERSFPIEKDIEETLAFRECHPGAVYIHRGESFYINRIDHEKREIHAIKTHDSYY TKPMIDSSVVVQETYAAKPLLHAPEVEVGLGEVEVTDRIAGYRKIRTHSDETMSAHEIEMPPITLQTVALWLKLPDRLQE MIGDHKLDFAGGIHAVEHAIISMYPLHLLVDRSDVGGVSTPSHPDLGSKSGIFIYDGHRGGVGYAEKGYDLIEEVLEGTL KAIESCPCESGCPGCIQSPKCGNNNEPLDKHAAIMLLHELLGKAPYIPPEKKEKHLSEARARKTIPQERKSSGDALDRVR RQLRRENINQEPQAGKEKKEKTFIATDENGGMIGVVSAPTPEKAAAKTFHKKLAGQQGATKEKPLEIRIRDLGAGSDYHF RAWTELFEAAENGDPESKEKKAVKKLFIRKMS
Specific function: Unknown
COG id: COG1205
COG function: function code R; Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6320497, Length=788, Percent_Identity=31.8527918781726, Blast_Score=417, Evalue=1e-117,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR018973 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR014021 [H]
Pfam domain/function: PF00270 DEAD; PF09369 DUF1998; PF00271 Helicase_C [H]
EC number: 3.6.1.- [C]
Molecular weight: Translated: 101606; Mature: 101606
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEISCLLNEIKASIRYENQIVHIEETPARDACYAPLELEVRIKAALSGTGIEALYSHQAE CCHHHHHHHHHHHHEECCEEEEEECCCCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHH AIEKVREGKDLVLCTSTASGKSLTYMIPVFEAVLKDPEATSLYISPLNALVNDQLKAFLE HHHHHHCCCCEEEEECCCCCCEEEEHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHH FEGALNSGAGIARYTGALSADQKRKIRDGKTNIVFTNPEMVHMSFLAWHHLWRRFFSNLR HHCCCCCCCCHHHHHCCCCCCHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCE FIVVDESHYYRGVIGSNMANVLRRLLRVAEYYGASPQFICCSATIGNPEDHTETLLGREA EEEEECCCCCCCHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCCEE VVVENNGSLQGPQKFVFWNPPLYMNGRGCTVRRSSFSEASALFTRAVQAGLQTLAFTRSR EEEECCCCCCCCCEEEEECCCEEECCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH QGVERMYRTCMELLRDRELPSAICPYRSGYFDREREEIERKMNSGELRGVISTNALELGI HHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCEEEEEE DIGGLDVCILDGYPGTVMSARQQAGRAGRSGNESLVLMVAGTNALDQYYMRNPADFFARS EECCEEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHHCCCHHHHHCC SENAVLNPKNPYILAGHLLCAAKEIPLRESDEKYFGGGYSRVVELLEAEGLLAGSDMKYS CCCCEECCCCCEEEECHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCC TDPFPYKQVSLRGIDNNTYSLLAFEGERSFPIEKDIEETLAFRECHPGAVYIHRGESFYI CCCCCCCEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCEEEE NRIDHEKREIHAIKTHDSYYTKPMIDSSVVVQETYAAKPLLHAPEVEVGLGEVEVTDRIA ECCCCCCHHEEEEEECCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCCCEEHHHHHH GYRKIRTHSDETMSAHEIEMPPITLQTVALWLKLPDRLQEMIGDHKLDFAGGIHAVEHAI HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHH ISMYPLHLLVDRSDVGGVSTPSHPDLGSKSGIFIYDGHRGGVGYAEKGYDLIEEVLEGTL HHHEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH KAIESCPCESGCPGCIQSPKCGNNNEPLDKHAAIMLLHELLGKAPYIPPEKKEKHLSEAR HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH ARKTIPQERKSSGDALDRVRRQLRRENINQEPQAGKEKKEKTFIATDENGGMIGVVSAPT HHHCCCHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHCCEEEEECCCCCEEEEEECCC PEKAAAKTFHKKLAGQQGATKEKPLEIRIRDLGAGSDYHFRAWTELFEAAENGDPESKEK CHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHH KAVKKLFIRKMS HHHHHHHHHCCC >Mature Secondary Structure MEISCLLNEIKASIRYENQIVHIEETPARDACYAPLELEVRIKAALSGTGIEALYSHQAE CCHHHHHHHHHHHHEECCEEEEEECCCCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHH AIEKVREGKDLVLCTSTASGKSLTYMIPVFEAVLKDPEATSLYISPLNALVNDQLKAFLE HHHHHHCCCCEEEEECCCCCCEEEEHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHH FEGALNSGAGIARYTGALSADQKRKIRDGKTNIVFTNPEMVHMSFLAWHHLWRRFFSNLR HHCCCCCCCCHHHHHCCCCCCHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCE FIVVDESHYYRGVIGSNMANVLRRLLRVAEYYGASPQFICCSATIGNPEDHTETLLGREA EEEEECCCCCCCHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCCEE VVVENNGSLQGPQKFVFWNPPLYMNGRGCTVRRSSFSEASALFTRAVQAGLQTLAFTRSR EEEECCCCCCCCCEEEEECCCEEECCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH QGVERMYRTCMELLRDRELPSAICPYRSGYFDREREEIERKMNSGELRGVISTNALELGI HHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCEEEEEE DIGGLDVCILDGYPGTVMSARQQAGRAGRSGNESLVLMVAGTNALDQYYMRNPADFFARS EECCEEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHHCCCHHHHHCC SENAVLNPKNPYILAGHLLCAAKEIPLRESDEKYFGGGYSRVVELLEAEGLLAGSDMKYS CCCCEECCCCCEEEECHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCC TDPFPYKQVSLRGIDNNTYSLLAFEGERSFPIEKDIEETLAFRECHPGAVYIHRGESFYI CCCCCCCEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCEEEE NRIDHEKREIHAIKTHDSYYTKPMIDSSVVVQETYAAKPLLHAPEVEVGLGEVEVTDRIA ECCCCCCHHEEEEEECCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCCCEEHHHHHH GYRKIRTHSDETMSAHEIEMPPITLQTVALWLKLPDRLQEMIGDHKLDFAGGIHAVEHAI HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHH ISMYPLHLLVDRSDVGGVSTPSHPDLGSKSGIFIYDGHRGGVGYAEKGYDLIEEVLEGTL HHHEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH KAIESCPCESGCPGCIQSPKCGNNNEPLDKHAAIMLLHELLGKAPYIPPEKKEKHLSEAR HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH ARKTIPQERKSSGDALDRVRRQLRRENINQEPQAGKEKKEKTFIATDENGGMIGVVSAPT HHHCCCHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHCCEEEEECCCCCEEEEEECCC PEKAAAKTFHKKLAGQQGATKEKPLEIRIRDLGAGSDYHFRAWTELFEAAENGDPESKEK CHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHH KAVKKLFIRKMS HHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on acid anhydrides [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8760912; 9384377 [H]