| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228480
Identifier: 21228480
GI number: 21228480
Start: 2835346
End: 2836482
Strand: Direct
Name: 21228480
Synonym: MM_2378
Alternate gene names: NA
Gene position: 2835346-2836482 (Clockwise)
Preceding gene: 21228477
Following gene: 21228481
Centisome position: 69.22
GC content: 46.61
Gene sequence:
>1137_bases ATGCAGACTCTGGTTATATGCATAGACAGGGATAATGATCTCGGCGAAAAAGCAAAAATGGTAACTCCTATTGTAGGGAG GGAGGCAAATATCCAGGCAGCTGTTGCACTCGGAATTGCCGATCCCGAGGATTCGGATACAAATACTATTTTCGGAGGGA TCCGTATCCTTGATGAGCTTCGGGCAAAAGGAGTTGATGCTGAGATCGTCTCTTTTGCAGGGGACAAGAATGTTGGAGTA ATCTCTGACCAGAAAATTGCCGAACAGCTCGAGCTCTATCTCCAGATGAACGAGGTGCAGAGAGCGGTCTTTGTTTCTGA CGGGGCTGAGGACGAGACTCTTGTACCTATAGTTCAGTCCAGAATGAAAATCGATTCCGTGAAGCGGATTGTCGTTATGC AGAGTGCAAACCTGGAAAGCACTTATTATATCCTCAAACACGCTTTCAGTGACCCAAAAATCTCCCAGACTTTCTTTGTG CCCCTTGGGCTTGCTTTTCTTATATACGCCATCTTCCTGCTTGCCCGCTATCCCGAAGGGGCAATTGTGGGAATTCTCGC GGCTGTAGGGCTGTACATGCTTTACAGGGGCTTCGGGCTTGATGATATTGTTGCCCTTGAAAAAGAAAAGCTCTGGGATG CTTTCCTTGAGCAGAGGATGGTTTTCATCAGCTACACTGCTGCCCTGCTTGTCAGTCTTGTAGCAACAGTATATGGAGCT ATGGAAGTCTGGAAGTTATATTCTGCAGAAGGGGTCTGGTACCACGGTACCCTTACTCTTATCTCAGTTTTCGTCAATGT CTCCATCTGGTGGTATGCAGTAGCTCTGCTGCTCGCTAACATGGGAAAGATCTTCGATCTTAAAACAGATGGCAGGCCCA TTTATAGAAATATTTCAATTTCTCTCTTCGTGATTGCAACAGGTCTGCTCTTCTGGGGAGCCAGCACATATATCCTGGCA GCGGCTTCCATATCTGATGGAGTGTTAGGCGATCCTACCCTTGCACTGCAGTACTTCGTTTATTCGATCGCTGTTTCCAT TCTCATTGCCCTTGCAGGGATAAAATATTCCCTTTCAAACCAGACCCCGGAAAACGAGAAGAGTGTGAGAGGAAGAAAAA GTAAAAAGATCGCATGA
Upstream 100 bases:
>100_bases TCGAAAGCTCAGACAGGAATATAATAAAAACGAAGCGGTATAATTCATAATAAAGATCAGCTCCCCGGGCAGGATGCTTT CATAAAATGATTGAGGAAAC
Downstream 100 bases:
>100_bases ACCTGTGTCCCATCAGCCGGAAATTATGAATTTTCATTAAAAACGCAGGAACGGAGACCCAAAAATGGATAAGATAGATG AGATTGCAGAAATTGCAGTT
Product: transmembrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 378; Mature: 378
Protein sequence:
>378_residues MQTLVICIDRDNDLGEKAKMVTPIVGREANIQAAVALGIADPEDSDTNTIFGGIRILDELRAKGVDAEIVSFAGDKNVGV ISDQKIAEQLELYLQMNEVQRAVFVSDGAEDETLVPIVQSRMKIDSVKRIVVMQSANLESTYYILKHAFSDPKISQTFFV PLGLAFLIYAIFLLARYPEGAIVGILAAVGLYMLYRGFGLDDIVALEKEKLWDAFLEQRMVFISYTAALLVSLVATVYGA MEVWKLYSAEGVWYHGTLTLISVFVNVSIWWYAVALLLANMGKIFDLKTDGRPIYRNISISLFVIATGLLFWGASTYILA AASISDGVLGDPTLALQYFVYSIAVSILIALAGIKYSLSNQTPENEKSVRGRKSKKIA
Sequences:
>Translated_378_residues MQTLVICIDRDNDLGEKAKMVTPIVGREANIQAAVALGIADPEDSDTNTIFGGIRILDELRAKGVDAEIVSFAGDKNVGV ISDQKIAEQLELYLQMNEVQRAVFVSDGAEDETLVPIVQSRMKIDSVKRIVVMQSANLESTYYILKHAFSDPKISQTFFV PLGLAFLIYAIFLLARYPEGAIVGILAAVGLYMLYRGFGLDDIVALEKEKLWDAFLEQRMVFISYTAALLVSLVATVYGA MEVWKLYSAEGVWYHGTLTLISVFVNVSIWWYAVALLLANMGKIFDLKTDGRPIYRNISISLFVIATGLLFWGASTYILA AASISDGVLGDPTLALQYFVYSIAVSILIALAGIKYSLSNQTPENEKSVRGRKSKKIA >Mature_378_residues MQTLVICIDRDNDLGEKAKMVTPIVGREANIQAAVALGIADPEDSDTNTIFGGIRILDELRAKGVDAEIVSFAGDKNVGV ISDQKIAEQLELYLQMNEVQRAVFVSDGAEDETLVPIVQSRMKIDSVKRIVVMQSANLESTYYILKHAFSDPKISQTFFV PLGLAFLIYAIFLLARYPEGAIVGILAAVGLYMLYRGFGLDDIVALEKEKLWDAFLEQRMVFISYTAALLVSLVATVYGA MEVWKLYSAEGVWYHGTLTLISVFVNVSIWWYAVALLLANMGKIFDLKTDGRPIYRNISISLFVIATGLLFWGASTYILA AASISDGVLGDPTLALQYFVYSIAVSILIALAGIKYSLSNQTPENEKSVRGRKSKKIA
Specific function: Unknown
COG id: COG2237
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.jannaschii MJ1032 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007254 [H]
Pfam domain/function: PF04123 DUF373 [H]
EC number: NA
Molecular weight: Translated: 41599; Mature: 41599
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQTLVICIDRDNDLGEKAKMVTPIVGREANIQAAVALGIADPEDSDTNTIFGGIRILDEL CCEEEEEEECCCCCCCHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH RAKGVDAEIVSFAGDKNVGVISDQKIAEQLELYLQMNEVQRAVFVSDGAEDETLVPIVQS HHCCCCHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHH RMKIDSVKRIVVMQSANLESTYYILKHAFSDPKISQTFFVPLGLAFLIYAIFLLARYPEG HHHHHHHHEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCC AIVGILAAVGLYMLYRGFGLDDIVALEKEKLWDAFLEQRMVFISYTAALLVSLVATVYGA HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MEVWKLYSAEGVWYHGTLTLISVFVNVSIWWYAVALLLANMGKIFDLKTDGRPIYRNISI HHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEECCE SLFVIATGLLFWGASTYILAAASISDGVLGDPTLALQYFVYSIAVSILIALAGIKYSLSN EHHHHHHHHHHHCCHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCC QTPENEKSVRGRKSKKIA CCCCCHHHHCCCCCCCCC >Mature Secondary Structure MQTLVICIDRDNDLGEKAKMVTPIVGREANIQAAVALGIADPEDSDTNTIFGGIRILDEL CCEEEEEEECCCCCCCHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH RAKGVDAEIVSFAGDKNVGVISDQKIAEQLELYLQMNEVQRAVFVSDGAEDETLVPIVQS HHCCCCHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHH RMKIDSVKRIVVMQSANLESTYYILKHAFSDPKISQTFFVPLGLAFLIYAIFLLARYPEG HHHHHHHHEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCC AIVGILAAVGLYMLYRGFGLDDIVALEKEKLWDAFLEQRMVFISYTAALLVSLVATVYGA HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MEVWKLYSAEGVWYHGTLTLISVFVNVSIWWYAVALLLANMGKIFDLKTDGRPIYRNISI HHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEECCE SLFVIATGLLFWGASTYILAAASISDGVLGDPTLALQYFVYSIAVSILIALAGIKYSLSN EHHHHHHHHHHHCCHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEECCC QTPENEKSVRGRKSKKIA CCCCCHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9389475 [H]