| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227891
Identifier: 21227891
GI number: 21227891
Start: 2136998
End: 2137915
Strand: Reverse
Name: 21227891
Synonym: MM_1789
Alternate gene names: NA
Gene position: 2137915-2136998 (Counterclockwise)
Preceding gene: 21227894
Following gene: 21227885
Centisome position: 52.19
GC content: 44.12
Gene sequence:
>918_bases GTGAACAGCACAGCAGTTGTGTTTACTACTTCGGATAACGAAGGCAATTTCAGGAAAACATATGAAAAGCCATTCAATGA AACTGCTTTCAGAGACCTTATCAATCTTTTCGAAGAAAAGCGTTTCCTCCAGATGGAAGAACGCTATGTCCCTCAGGAAG GCCAGCCTTTAGTTACGGATGTCGGGACTCTGGAAATTAGCCTGGAAGATGAAGTACATACAAAAACCGTAACTGTAGAC CCTTATTATTCCGAATACATGCCAGAAGGCCTTCAGGAAATAGATTCCGCACTTGTTGAACTGAGAGCTTACGCCCTTTC CACCTCTCGGGACGAAGCTGAAGAGATAGCCGAAGCCTGGATAGAGAACGCACCCACATACGGTTATGACGGTTTTGACC TGAAACTGGAAGACCATGAAGTTCTTGAGACGTACCCTGAACAGCACTTTCTGAACTATGCATTTACCAGCAGGCACGGA GGGTATGGAAACAGGACAGACCAGATCGTAACCGAAGCTCTCACCCCTCACAGTATGGAAATTACTGTTTCTGAAAGAGA AGTAAGGTCTGCCGTAATAGATGGAGAATGGGATGAAATTGCCCAGAAGCCCCTTGAAAAAGAACCGCACAATGATGACA GCACTGAAGTAGTTTCAGGAGCTGAAGAGGACCTTCTGGAGATGAAATATCCTGTATCCGAAGAAAAGACTCCATGGGAT CAATGGTATGAAGAAGGGAACATCCAGTTTATTAAAGCCCCCAATGAGCCGGAATTGATAACAGCATATTACGGGACTGT GTACGGAATAGAGGTCTTCGATATAATAAATGATGAGTCCTTTTACACAGGTAAAGTAAAAGAAAGCGACTCTGAACAGA TGAGAGACCTTGGATGGACAGATTTGGAAGAAGAATAA
Upstream 100 bases:
>100_bases TAACCCGGAGAATCAAACGGACGTATCAGAGAATGCTACCATAACCCACAAAACATACGGAGCCTTCACGCTCCCGGAAA TGCAGCTGCAGGAGTTAACA
Downstream 100 bases:
>100_bases ACCCTGAAAAAATATTAGAATAGAAGAGGCAAAAATTAAAAAAGATAAAAAAAGCACCTTTTTTATTAAGGTGCTTTACG TTTATTTTTTTAAGGTGCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 305; Mature: 305
Protein sequence:
>305_residues MNSTAVVFTTSDNEGNFRKTYEKPFNETAFRDLINLFEEKRFLQMEERYVPQEGQPLVTDVGTLEISLEDEVHTKTVTVD PYYSEYMPEGLQEIDSALVELRAYALSTSRDEAEEIAEAWIENAPTYGYDGFDLKLEDHEVLETYPEQHFLNYAFTSRHG GYGNRTDQIVTEALTPHSMEITVSEREVRSAVIDGEWDEIAQKPLEKEPHNDDSTEVVSGAEEDLLEMKYPVSEEKTPWD QWYEEGNIQFIKAPNEPELITAYYGTVYGIEVFDIINDESFYTGKVKESDSEQMRDLGWTDLEEE
Sequences:
>Translated_305_residues MNSTAVVFTTSDNEGNFRKTYEKPFNETAFRDLINLFEEKRFLQMEERYVPQEGQPLVTDVGTLEISLEDEVHTKTVTVD PYYSEYMPEGLQEIDSALVELRAYALSTSRDEAEEIAEAWIENAPTYGYDGFDLKLEDHEVLETYPEQHFLNYAFTSRHG GYGNRTDQIVTEALTPHSMEITVSEREVRSAVIDGEWDEIAQKPLEKEPHNDDSTEVVSGAEEDLLEMKYPVSEEKTPWD QWYEEGNIQFIKAPNEPELITAYYGTVYGIEVFDIINDESFYTGKVKESDSEQMRDLGWTDLEEE >Mature_305_residues MNSTAVVFTTSDNEGNFRKTYEKPFNETAFRDLINLFEEKRFLQMEERYVPQEGQPLVTDVGTLEISLEDEVHTKTVTVD PYYSEYMPEGLQEIDSALVELRAYALSTSRDEAEEIAEAWIENAPTYGYDGFDLKLEDHEVLETYPEQHFLNYAFTSRHG GYGNRTDQIVTEALTPHSMEITVSEREVRSAVIDGEWDEIAQKPLEKEPHNDDSTEVVSGAEEDLLEMKYPVSEEKTPWD QWYEEGNIQFIKAPNEPELITAYYGTVYGIEVFDIINDESFYTGKVKESDSEQMRDLGWTDLEEE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35238; Mature: 35238
Theoretical pI: Translated: 3.88; Mature: 3.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSTAVVFTTSDNEGNFRKTYEKPFNETAFRDLINLFEEKRFLQMEERYVPQEGQPLVTD CCCCEEEEEECCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE VGTLEISLEDEVHTKTVTVDPYYSEYMPEGLQEIDSALVELRAYALSTSRDEAEEIAEAW CEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH IENAPTYGYDGFDLKLEDHEVLETYPEQHFLNYAFTSRHGGYGNRTDQIVTEALTPHSME HHCCCCCCCCCEEEEECCHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCEE ITVSEREVRSAVIDGEWDEIAQKPLEKEPHNDDSTEVVSGAEEDLLEMKYPVSEEKTPWD EEECHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCHHHHCCCHHHHHHHCCCCCCCCCCHH QWYEEGNIQFIKAPNEPELITAYYGTVYGIEVFDIINDESFYTGKVKESDSEQMRDLGWT HHHHCCCEEEEECCCCCCEEEEECCCEEEEEEEEEECCCCEEECCCCCCCHHHHHHCCCC DLEEE CCCCC >Mature Secondary Structure MNSTAVVFTTSDNEGNFRKTYEKPFNETAFRDLINLFEEKRFLQMEERYVPQEGQPLVTD CCCCEEEEEECCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE VGTLEISLEDEVHTKTVTVDPYYSEYMPEGLQEIDSALVELRAYALSTSRDEAEEIAEAW CEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH IENAPTYGYDGFDLKLEDHEVLETYPEQHFLNYAFTSRHGGYGNRTDQIVTEALTPHSME HHCCCCCCCCCEEEEECCHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCEE ITVSEREVRSAVIDGEWDEIAQKPLEKEPHNDDSTEVVSGAEEDLLEMKYPVSEEKTPWD EEECHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCHHHHCCCHHHHHHHCCCCCCCCCCHH QWYEEGNIQFIKAPNEPELITAYYGTVYGIEVFDIINDESFYTGKVKESDSEQMRDLGWT HHHHCCCEEEEECCCCCCEEEEECCCEEEEEEEEEECCCCEEECCCCCCCHHHHHHCCCC DLEEE CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA