Definition Thermococcus onnurineus NA1, complete genome.
Accession NC_011529
Length 1,847,607

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The map label for this gene is 212223318

Identifier: 212223318

GI number: 212223318

Start: 148982

End: 151303

Strand: Reverse

Name: 212223318

Synonym: TON_0172

Alternate gene names: NA

Gene position: 151303-148982 (Counterclockwise)

Preceding gene: 212223319

Following gene: 212223315

Centisome position: 8.19

GC content: 48.02

Gene sequence:

>2322_bases
ATGGCCGTGGAGGATAAAAAGCCTAAAAAGAAAGCGGAAGAAGTCGAGGGGGTTGTGCTCGAAAAGATCCGGGTACTGCC
TCCTTCGCTCGAACGCCTCGTAACCATAGCAGCGATTCTTATAGGCATCTACGAAATACTGTTTATATTCAACTTCAATT
ACACACTATACGACATGTTTTCCCGTATGGGTATCGAAATAAGTTTTCTGAAGACGACGTTCCAAACAAAACAGGGAGAA
GCATTTGTTTTGGCCATGATACTCTTTATTACGTTTATGCTCTACCCAATTCGTAAGAAAGAGAAATACCTGAAAAAGGT
ACCAATTTATGACTATGTACTGGCAGCTCTCGGAGTTATCTCATCACTATACCTGTTTGCAGTTTACCAACGCTACGCTG
AGTTCGCCGAAGTAACACAGACCGATGTCATATTTGGCATTATGGCAATAATTCTCGTCCTTGAAGCGACACGTAGAGTC
CTCGGATGGGTTCTGCCACTCGTTGTCACAGTATTTCTGCTATACGGAATCAACAACATAGGCTTCAACTGGATACGATT
TACCCAGCAACTCTACTTTGATGAAGGAATCTTTGGAATTCCGTTCTTCGTCATGACAATATACGTATTTGCTTTCGTGT
TCTTTGGAGCATTCCTTCTCAGGATAGGCATCAGCGACTACATTACCGAATTCATGATAGCGCTTTTCGGTTCCCGTCCG
GGTGGACCTGCAAAGGCCGCCGTTGTTTCAAGTGGCCTCATGGGAACCGTCAGCGGATCTAGTGTTGCAAACGTCCTCAC
AACTGGAACTTTCACGATACCCCTCATGAAAAAAGCTGGATATCCCCCCGAGATAGCCGGTGCCGTTGAGCCGGTTGCAT
CAACAGGCGGACAGCTGATGCCTCCAATAATGGGTGCAGCAGCATTCATAATGGCCGAGTTCCTTGGAATACCATACAAC
AAGTTGATAATAGCTGCCGTCATCCCCGCTCTCGTGTATTATTCCGGCGTCTACATCTTCATAGACCTCGAGACTAAAAG
GCTTGGACTCAAGAGCATGGCAGTTGAAGAGTCAAAGAAGCTCGGGTATTTCCTCAGAAAGCTCTATATCCTCTTGCCCG
TAGCAGTCATTACAGTCGCTCTCGTCTGGGGAATCCCACCCCACATATCTGCCATCTCATCCCTTGGAATTGCCATTTGG
GTAGCCTGGATCGCTAGGGACGAGATAAATGGTCACGAAGGGTTCTATGTCGGCATTGTCCTCCTAACGACTCTCATGAT
GTTTACAGGAAAGTCAATGACAGGACTTGTTGCGGGTCTTTTAGTGGTTCTCTCGCTTGTACTGGTGGGCCTAGCGTTTA
TGACGGACCTAGTAGACTTCAACGAAAAACTCTATATCAGCCTGATGTTCATACTTTTCATAGCCCTCACCAAGCATCTC
GGAATGACCAAGGAGCAGATACTGCTGATGAGCGGTGTCATGGGAATTGCCTTCTCTCTCATCGTGGGATACATATCCAA
TAGTGAAGAGGGCAGGCGGATGTACTCGGCGACTTATGAGTCAGTCATTGACGCAGGCAAAACCAGTACCAGCGTCATGC
TAGCAGCAGCTTCTGCAGGCTTGATTCAGGGAGTTCTAACAATGACCGGCCTCGTTACCCGCATTGGATATCGCCTCGTT
GATTTGACTGCCGGGAACCTATTACTGCTGCTGATCCTTACTATGGTATTCAGCCTCATCCTAGGAATGGGAGTTCCTAC
GACCGCCAACTACATTATCACCTCTCTAGTTGCGGCACCTGCTATTTTCAATGCGGTTCAAAGTGTTGCCCCGTACGACC
AGCCAGTTCCAGGCTTCGCCACTGCGATAGCTCTTCTCGCGGCGCACTTCTTCGTCTTCTACTTTGGTATACTAGCAGAC
GTCACTCCACCGGTTGCCCTAGCAAGCTACGCAGGTTCAGCTTTAGCTGGTGGAGACTTTTGGAAGACTGCCATGAACGC
GGTCAAGTACGCCTTAGCTGGCTACATAGGACCCTACATCTATTTCACTCACCCGGAGATGTTCCTGATAACGGTTCCAG
AATGGAACATTGCAACGGCAATCAGGGTGCTCTATTACCTCCTGGCGACTCTGTTCATAATGTACCTGCTGGCGATAGCA
CTGACTGGATTCTATAAGACACACCTGAAGAAGTGGGTTAGAATAATACTAGTGGTCATTGGGCTAGCAGGAGTGACACT
GAACCCAATAATCATTGGGACAGGAGTCGCTGCTTGGCTTGGCCTGAAGTTCTACGGAGTCAGAGTTTCTGCGGGGGCAT
AG

Upstream 100 bases:

>100_bases
GTAAATGGGAAGTTAGTTTTTTCACCCAGACGAGAAACCCTTGTTGAATTTGAGGTTAAGGAATGCAGTCTGTTCGAGAT
AGCGATTGGGAGGTGTTAAA

Downstream 100 bases:

>100_bases
CCCCCTCAATCCTCTATCATTTCGTTCATTGTTTTTATTATTTCCTCGGAGGTTCTCGTAATCTGAGTGGCGGCATCGCT
GGCCGTTCTTTGGGCTATCC

Product: TRAP-type transporter

Products: NA

Alternate protein names: Trap Transporter 4tm/12tm Fusion Protein; TRAP Transporter; TRAP-Type Transport System Fused Permease Component; TRAP-Type Transport System Permease Protein; TRAP-Type Transport System Permease Component; TRAP-Type Transporter 4TM/12TM Fusion Protein; TRAP-Type Transporter Fused Permease Components; TRAP-T Family Transporter With Fused DctQ/DctM Subunits; Inner Membrane Protein; TRAP-Type Transporter Permease Component; Permease; TRAP-Type Transport System Permease; TRAP Transporter Large Permease; TRAP Transporter 4TM/12TM Fusion Family; TRAP-Type Transporter Fused Permeases; C4-Dicarboxylate Transporter; TRAP Type Transporter Protein; TRAP-T Family Transporter Fused Inner Membrane Subunits; TRAP Transporter Transmembrane Protein; Integral Membrane Protein; Transcriptional Regulator DeoR Family; Trap Family Transporter; N-Carbamoyl-L-Amino Acid Hydrolase; TRAP-Type Transporter; TRAP-Type Transport System Fused Permease Components; 4TM/12TM TRAP Transporter; TRAP-Type Transport System; TRAP Transporter Membrane-Spanning Component

Number of amino acids: Translated: 773; Mature: 772

Protein sequence:

>773_residues
MAVEDKKPKKKAEEVEGVVLEKIRVLPPSLERLVTIAAILIGIYEILFIFNFNYTLYDMFSRMGIEISFLKTTFQTKQGE
AFVLAMILFITFMLYPIRKKEKYLKKVPIYDYVLAALGVISSLYLFAVYQRYAEFAEVTQTDVIFGIMAIILVLEATRRV
LGWVLPLVVTVFLLYGINNIGFNWIRFTQQLYFDEGIFGIPFFVMTIYVFAFVFFGAFLLRIGISDYITEFMIALFGSRP
GGPAKAAVVSSGLMGTVSGSSVANVLTTGTFTIPLMKKAGYPPEIAGAVEPVASTGGQLMPPIMGAAAFIMAEFLGIPYN
KLIIAAVIPALVYYSGVYIFIDLETKRLGLKSMAVEESKKLGYFLRKLYILLPVAVITVALVWGIPPHISAISSLGIAIW
VAWIARDEINGHEGFYVGIVLLTTLMMFTGKSMTGLVAGLLVVLSLVLVGLAFMTDLVDFNEKLYISLMFILFIALTKHL
GMTKEQILLMSGVMGIAFSLIVGYISNSEEGRRMYSATYESVIDAGKTSTSVMLAAASAGLIQGVLTMTGLVTRIGYRLV
DLTAGNLLLLLILTMVFSLILGMGVPTTANYIITSLVAAPAIFNAVQSVAPYDQPVPGFATAIALLAAHFFVFYFGILAD
VTPPVALASYAGSALAGGDFWKTAMNAVKYALAGYIGPYIYFTHPEMFLITVPEWNIATAIRVLYYLLATLFIMYLLAIA
LTGFYKTHLKKWVRIILVVIGLAGVTLNPIIIGTGVAAWLGLKFYGVRVSAGA

Sequences:

>Translated_773_residues
MAVEDKKPKKKAEEVEGVVLEKIRVLPPSLERLVTIAAILIGIYEILFIFNFNYTLYDMFSRMGIEISFLKTTFQTKQGE
AFVLAMILFITFMLYPIRKKEKYLKKVPIYDYVLAALGVISSLYLFAVYQRYAEFAEVTQTDVIFGIMAIILVLEATRRV
LGWVLPLVVTVFLLYGINNIGFNWIRFTQQLYFDEGIFGIPFFVMTIYVFAFVFFGAFLLRIGISDYITEFMIALFGSRP
GGPAKAAVVSSGLMGTVSGSSVANVLTTGTFTIPLMKKAGYPPEIAGAVEPVASTGGQLMPPIMGAAAFIMAEFLGIPYN
KLIIAAVIPALVYYSGVYIFIDLETKRLGLKSMAVEESKKLGYFLRKLYILLPVAVITVALVWGIPPHISAISSLGIAIW
VAWIARDEINGHEGFYVGIVLLTTLMMFTGKSMTGLVAGLLVVLSLVLVGLAFMTDLVDFNEKLYISLMFILFIALTKHL
GMTKEQILLMSGVMGIAFSLIVGYISNSEEGRRMYSATYESVIDAGKTSTSVMLAAASAGLIQGVLTMTGLVTRIGYRLV
DLTAGNLLLLLILTMVFSLILGMGVPTTANYIITSLVAAPAIFNAVQSVAPYDQPVPGFATAIALLAAHFFVFYFGILAD
VTPPVALASYAGSALAGGDFWKTAMNAVKYALAGYIGPYIYFTHPEMFLITVPEWNIATAIRVLYYLLATLFIMYLLAIA
LTGFYKTHLKKWVRIILVVIGLAGVTLNPIIIGTGVAAWLGLKFYGVRVSAGA
>Mature_772_residues
AVEDKKPKKKAEEVEGVVLEKIRVLPPSLERLVTIAAILIGIYEILFIFNFNYTLYDMFSRMGIEISFLKTTFQTKQGEA
FVLAMILFITFMLYPIRKKEKYLKKVPIYDYVLAALGVISSLYLFAVYQRYAEFAEVTQTDVIFGIMAIILVLEATRRVL
GWVLPLVVTVFLLYGINNIGFNWIRFTQQLYFDEGIFGIPFFVMTIYVFAFVFFGAFLLRIGISDYITEFMIALFGSRPG
GPAKAAVVSSGLMGTVSGSSVANVLTTGTFTIPLMKKAGYPPEIAGAVEPVASTGGQLMPPIMGAAAFIMAEFLGIPYNK
LIIAAVIPALVYYSGVYIFIDLETKRLGLKSMAVEESKKLGYFLRKLYILLPVAVITVALVWGIPPHISAISSLGIAIWV
AWIARDEINGHEGFYVGIVLLTTLMMFTGKSMTGLVAGLLVVLSLVLVGLAFMTDLVDFNEKLYISLMFILFIALTKHLG
MTKEQILLMSGVMGIAFSLIVGYISNSEEGRRMYSATYESVIDAGKTSTSVMLAAASAGLIQGVLTMTGLVTRIGYRLVD
LTAGNLLLLLILTMVFSLILGMGVPTTANYIITSLVAAPAIFNAVQSVAPYDQPVPGFATAIALLAAHFFVFYFGILADV
TPPVALASYAGSALAGGDFWKTAMNAVKYALAGYIGPYIYFTHPEMFLITVPEWNIATAIRVLYYLLATLFIMYLLAIAL
TGFYKTHLKKWVRIILVVIGLAGVTLNPIIIGTGVAAWLGLKFYGVRVSAGA

Specific function: Unknown

COG id: COG4666

COG function: function code R; TRAP-type uncharacterized transport system, fused permease components

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 84468; Mature: 84337

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVEDKKPKKKAEEVEGVVLEKIRVLPPSLERLVTIAAILIGIYEILFIFNFNYTLYDMF
CCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
SRMGIEISFLKTTFQTKQGEAFVLAMILFITFMLYPIRKKEKYLKKVPIYDYVLAALGVI
HHHCCEEEEHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
SSLYLFAVYQRYAEFAEVTQTDVIFGIMAIILVLEATRRVLGWVLPLVVTVFLLYGINNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GFNWIRFTQQLYFDEGIFGIPFFVMTIYVFAFVFFGAFLLRIGISDYITEFMIALFGSRP
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GGPAKAAVVSSGLMGTVSGSSVANVLTTGTFTIPLMKKAGYPPEIAGAVEPVASTGGQLM
CCCHHHHHHHCCCCCCCCCCHHHHHHHCCCEEEEHHHHCCCCCCHHHHHHHHHHCCCCCC
PPIMGAAAFIMAEFLGIPYNKLIIAAVIPALVYYSGVYIFIDLETKRLGLKSMAVEESKK
CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEEEECHHHHCHHHHHHHHHHH
LGYFLRKLYILLPVAVITVALVWGIPPHISAISSLGIAIWVAWIARDEINGHEGFYVGIV
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
LLTTLMMFTGKSMTGLVAGLLVVLSLVLVGLAFMTDLVDFNEKLYISLMFILFIALTKHL
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
GMTKEQILLMSGVMGIAFSLIVGYISNSEEGRRMYSATYESVIDAGKTSTSVMLAAASAG
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
LIQGVLTMTGLVTRIGYRLVDLTAGNLLLLLILTMVFSLILGMGVPTTANYIITSLVAAP
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
AIFNAVQSVAPYDQPVPGFATAIALLAAHFFVFYFGILADVTPPVALASYAGSALAGGDF
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHH
WKTAMNAVKYALAGYIGPYIYFTHPEMFLITVPEWNIATAIRVLYYLLATLFIMYLLAIA
HHHHHHHHHHHHHHHHCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LTGFYKTHLKKWVRIILVVIGLAGVTLNPIIIGTGVAAWLGLKFYGVRVSAGA
HHHHHHHHHHHHHHHHHHHHHHHCCEECCEEEHHHHHHHHHHHHEEEEEECCC
>Mature Secondary Structure 
AVEDKKPKKKAEEVEGVVLEKIRVLPPSLERLVTIAAILIGIYEILFIFNFNYTLYDMF
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
SRMGIEISFLKTTFQTKQGEAFVLAMILFITFMLYPIRKKEKYLKKVPIYDYVLAALGVI
HHHCCEEEEHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
SSLYLFAVYQRYAEFAEVTQTDVIFGIMAIILVLEATRRVLGWVLPLVVTVFLLYGINNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GFNWIRFTQQLYFDEGIFGIPFFVMTIYVFAFVFFGAFLLRIGISDYITEFMIALFGSRP
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GGPAKAAVVSSGLMGTVSGSSVANVLTTGTFTIPLMKKAGYPPEIAGAVEPVASTGGQLM
CCCHHHHHHHCCCCCCCCCCHHHHHHHCCCEEEEHHHHCCCCCCHHHHHHHHHHCCCCCC
PPIMGAAAFIMAEFLGIPYNKLIIAAVIPALVYYSGVYIFIDLETKRLGLKSMAVEESKK
CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEEEECHHHHCHHHHHHHHHHH
LGYFLRKLYILLPVAVITVALVWGIPPHISAISSLGIAIWVAWIARDEINGHEGFYVGIV
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
LLTTLMMFTGKSMTGLVAGLLVVLSLVLVGLAFMTDLVDFNEKLYISLMFILFIALTKHL
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
GMTKEQILLMSGVMGIAFSLIVGYISNSEEGRRMYSATYESVIDAGKTSTSVMLAAASAG
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
LIQGVLTMTGLVTRIGYRLVDLTAGNLLLLLILTMVFSLILGMGVPTTANYIITSLVAAP
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
AIFNAVQSVAPYDQPVPGFATAIALLAAHFFVFYFGILADVTPPVALASYAGSALAGGDF
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHH
WKTAMNAVKYALAGYIGPYIYFTHPEMFLITVPEWNIATAIRVLYYLLATLFIMYLLAIA
HHHHHHHHHHHHHHHHCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LTGFYKTHLKKWVRIILVVIGLAGVTLNPIIIGTGVAAWLGLKFYGVRVSAGA
HHHHHHHHHHHHHHHHHHHHHHHCCEECCEEEHHHHHHHHHHHHEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA