Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

Click here to switch to the map view.

The map label for this gene is 209695324

Identifier: 209695324

GI number: 209695324

Start: 1993015

End: 1993521

Strand: Reverse

Name: 209695324

Synonym: VSAL_I1857

Alternate gene names: NA

Gene position: 1993521-1993015 (Counterclockwise)

Preceding gene: 209695325

Following gene: 209695323

Centisome position: 59.95

GC content: 41.42

Gene sequence:

>507_bases
ATGAAAGTACATACTTTAGATAAAGCAGAACTAATCAGTGAAATCCAATACGGCTCAAACCTAAACCATGCAATGGAAGC
GGGTCGTCGTGCAGATTTTGCCTTAATGATGTCTTTATTATCTAATGACTTACGTGAAAACACACCCGTAGAAAAAATTG
ATGAGAAAAAACTAACCGAAGAACTACTACGTCAGCGCTTTCAATTGGCTGATGCCCAAATACTTCGCAGCAACGAAGAA
AGCTACTCTCGTTCAGCCTCTCAAGCTCATCAGTTTCATAATGGCGGATTAGCAAGTGCTAAGCTGCAACATGGCCTAGC
ACCCGATGCAATGGCTTACATGCCCCAAGATACCTGTAACTTACCAGAAGACGTATACCACAACCTATCTGGTCACCAAC
GACGTCAGTTAGAAAGTGGAAATGAAATATTTAACGCGATCCCTCAAGATCTATACAACGAATTAGTCACAGCAAAGCGT
CATTCAGAGATGAACTTATACGTATAG

Upstream 100 bases:

>100_bases
TCAATAAAATAATTTTAAAAAACGGCAATTAATTTCCTAAAAAAGCTAAAGATTTTCAATTCTTTTCCGATAAGTATTTA
TCATCAAGAGGAATTGATTC

Downstream 100 bases:

>100_bases
CTTAACGATTCAAGCTATTGAACATCGACCTTAACTACTTATTTGTTCATTCACTTACCCTTACTTTCCTTTCTCTTCTA
GATTTATTCTCTTCTCATCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MKVHTLDKAELISEIQYGSNLNHAMEAGRRADFALMMSLLSNDLRENTPVEKIDEKKLTEELLRQRFQLADAQILRSNEE
SYSRSASQAHQFHNGGLASAKLQHGLAPDAMAYMPQDTCNLPEDVYHNLSGHQRRQLESGNEIFNAIPQDLYNELVTAKR
HSEMNLYV

Sequences:

>Translated_168_residues
MKVHTLDKAELISEIQYGSNLNHAMEAGRRADFALMMSLLSNDLRENTPVEKIDEKKLTEELLRQRFQLADAQILRSNEE
SYSRSASQAHQFHNGGLASAKLQHGLAPDAMAYMPQDTCNLPEDVYHNLSGHQRRQLESGNEIFNAIPQDLYNELVTAKR
HSEMNLYV
>Mature_168_residues
MKVHTLDKAELISEIQYGSNLNHAMEAGRRADFALMMSLLSNDLRENTPVEKIDEKKLTEELLRQRFQLADAQILRSNEE
SYSRSASQAHQFHNGGLASAKLQHGLAPDAMAYMPQDTCNLPEDVYHNLSGHQRRQLESGNEIFNAIPQDLYNELVTAKR
HSEMNLYV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19126; Mature: 19126

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVHTLDKAELISEIQYGSNLNHAMEAGRRADFALMMSLLSNDLRENTPVEKIDEKKLTE
CCCCCCHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
ELLRQRFQLADAQILRSNEESYSRSASQAHQFHNGGLASAKLQHGLAPDAMAYMPQDTCN
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHCCCCCCC
LPEDVYHNLSGHQRRQLESGNEIFNAIPQDLYNELVTAKRHSEMNLYV
CCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKVHTLDKAELISEIQYGSNLNHAMEAGRRADFALMMSLLSNDLRENTPVEKIDEKKLTE
CCCCCCHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
ELLRQRFQLADAQILRSNEESYSRSASQAHQFHNGGLASAKLQHGLAPDAMAYMPQDTCN
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHCCCCCCC
LPEDVYHNLSGHQRRQLESGNEIFNAIPQDLYNELVTAKRHSEMNLYV
CCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA