Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is bcsP31 [H]

Identifier: 209694773

GI number: 209694773

Start: 1338909

End: 1339841

Strand: Direct

Name: bcsP31 [H]

Synonym: VSAL_I1229

Alternate gene names: 209694773

Gene position: 1338909-1339841 (Clockwise)

Preceding gene: 209694772

Following gene: 209694774

Centisome position: 40.27

GC content: 41.26

Gene sequence:

>933_bases
ATGATTGTGTTTAAACGTAACTTACTATTGGCTTTATTATTTATATTGCCATCAGCAGTGAACGCTGAGAACTATTCAAT
TGGTACGGGTGGGCAGAGTGGGATCTATTATCCGTTTGGTGGTGCGTTAGCAAAAGTGTGGTCAGAACATGTACCCGATG
TGAATGCGAAAGCTGAAGTGACAGCCGCTTCAGTAGAGAACACAATCAAAGTGGTACGTGGCGATATGATCGCAGGTATC
GCAATGGGGAATGTCGTGCTTGATGCCTACAATGGCAAAGGTAAATTTCCGAAAAAAATGCCAGTAAACACCCTTTTTGC
ACTGTACCCAAACCTAGTGCATACACTAACTCTTGAAAAATCAGGCATTACGTCATTATCACAATTAAAAGGCAAGCGAG
TGTCTTTAGGGGCTCCTGCCAGTGGTACGGCTGTGACGTCTGCTGCTTTGCTTGAATCTTTAGGTATTGATGTGAAAAAA
GACATTGATGCCGTGTATTTAAATTATTCTGAAACGACTAATGCGCTTGCGAATGGTCAAATTGATGCTGGCTTTATTGT
GGGTGGTCAAGGCGTAGGGGCGGTAACTCAAATCGCGTTAACGCATAAAATTAAAGTGCTTTCAATTACACCAGAAGAAA
GTGCAATGTTCATGAAAAAATACCCTGCATACAGCACGTACGATATGCCTGCTGGTGTATACAACAATGTAGGTGAAGTA
TCGACATTAAGTGTATGGAACGTATTGGTTGTAAACGCAAAAATGAGTGATGACATGGCATACAACTTAACCAAAGCCGC
TTTTGAAAATATCGGCGATGTTCGTAAAGTGGTTAAAATGGCAGAGATGACAACACCTGAAAATGCAGATCGCTTACAAG
GTGTCCCTCTTCATCCTGGTGCTCAAAAATATCTTGATTCAATCATAAAATAA

Upstream 100 bases:

>100_bases
TTTCATTTTACCGCGGGTAATGTGAGCTTGCTGATAAACTAATCTATTATAAACATTTTATGTAGAGTCTTTGTCTGAAT
AAATATTAATAATCAAGGAG

Downstream 100 bases:

>100_bases
TAAGCGCCAAATACACGCAAAACGAAAGGGTAAGTGTCTCGCTTGCCTTTTCTTCTTTTCTGACTTTATCCAAAGGCATT
AATATGGATATTATGACCGA

Product: immunogenic protein precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MIVFKRNLLLALLFILPSAVNAENYSIGTGGQSGIYYPFGGALAKVWSEHVPDVNAKAEVTAASVENTIKVVRGDMIAGI
AMGNVVLDAYNGKGKFPKKMPVNTLFALYPNLVHTLTLEKSGITSLSQLKGKRVSLGAPASGTAVTSAALLESLGIDVKK
DIDAVYLNYSETTNALANGQIDAGFIVGGQGVGAVTQIALTHKIKVLSITPEESAMFMKKYPAYSTYDMPAGVYNNVGEV
STLSVWNVLVVNAKMSDDMAYNLTKAAFENIGDVRKVVKMAEMTTPENADRLQGVPLHPGAQKYLDSIIK

Sequences:

>Translated_310_residues
MIVFKRNLLLALLFILPSAVNAENYSIGTGGQSGIYYPFGGALAKVWSEHVPDVNAKAEVTAASVENTIKVVRGDMIAGI
AMGNVVLDAYNGKGKFPKKMPVNTLFALYPNLVHTLTLEKSGITSLSQLKGKRVSLGAPASGTAVTSAALLESLGIDVKK
DIDAVYLNYSETTNALANGQIDAGFIVGGQGVGAVTQIALTHKIKVLSITPEESAMFMKKYPAYSTYDMPAGVYNNVGEV
STLSVWNVLVVNAKMSDDMAYNLTKAAFENIGDVRKVVKMAEMTTPENADRLQGVPLHPGAQKYLDSIIK
>Mature_310_residues
MIVFKRNLLLALLFILPSAVNAENYSIGTGGQSGIYYPFGGALAKVWSEHVPDVNAKAEVTAASVENTIKVVRGDMIAGI
AMGNVVLDAYNGKGKFPKKMPVNTLFALYPNLVHTLTLEKSGITSLSQLKGKRVSLGAPASGTAVTSAALLESLGIDVKK
DIDAVYLNYSETTNALANGQIDAGFIVGGQGVGAVTQIALTHKIKVLSITPEESAMFMKKYPAYSTYDMPAGVYNNVGEV
STLSVWNVLVVNAKMSDDMAYNLTKAAFENIGDVRKVVKMAEMTTPENADRLQGVPLHPGAQKYLDSIIK

Specific function: Unknown

COG id: COG2358

COG function: function code R; TRAP-type uncharacterized transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015168
- InterPro:   IPR011852 [H]

Pfam domain/function: PF09084 NMT1 [H]

EC number: NA

Molecular weight: Translated: 33023; Mature: 33023

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVFKRNLLLALLFILPSAVNAENYSIGTGGQSGIYYPFGGALAKVWSEHVPDVNAKAEV
CEEEEHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEECCCHHHHHHHHHHCCCCCCCCEE
TAASVENTIKVVRGDMIAGIAMGNVVLDAYNGKGKFPKKMPVNTLFALYPNLVHTLTLEK
EHHHHHHHHHHHHHHHHHHEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHEEEECC
SGITSLSQLKGKRVSLGAPASGTAVTSAALLESLGIDVKKDIDAVYLNYSETTNALANGQ
CCCCHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHCCC
IDAGFIVGGQGVGAVTQIALTHKIKVLSITPEESAMFMKKYPAYSTYDMPAGVYNNVGEV
CCCEEEECCCCCCHHHHHEEHEEEEEEEECCCHHHHHHHHCCCCCCCCCCCCHHCCCCCC
STLSVWNVLVVNAKMSDDMAYNLTKAAFENIGDVRKVVKMAEMTTPENADRLQGVPLHPG
CCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCC
AQKYLDSIIK
HHHHHHHHCC
>Mature Secondary Structure
MIVFKRNLLLALLFILPSAVNAENYSIGTGGQSGIYYPFGGALAKVWSEHVPDVNAKAEV
CEEEEHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEECCCHHHHHHHHHHCCCCCCCCEE
TAASVENTIKVVRGDMIAGIAMGNVVLDAYNGKGKFPKKMPVNTLFALYPNLVHTLTLEK
EHHHHHHHHHHHHHHHHHHEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHEEEECC
SGITSLSQLKGKRVSLGAPASGTAVTSAALLESLGIDVKKDIDAVYLNYSETTNALANGQ
CCCCHHHHHCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHCCC
IDAGFIVGGQGVGAVTQIALTHKIKVLSITPEESAMFMKKYPAYSTYDMPAGVYNNVGEV
CCCEEEECCCCCCHHHHHEEHEEEEEEEECCCHHHHHHHHCCCCCCCCCCCCHHCCCCCC
STLSVWNVLVVNAKMSDDMAYNLTKAAFENIGDVRKVVKMAEMTTPENADRLQGVPLHPG
CCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCC
AQKYLDSIIK
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3133283 [H]