Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209694663

Identifier: 209694663

GI number: 209694663

Start: 1206727

End: 1207227

Strand: Reverse

Name: 209694663

Synonym: VSAL_I1109

Alternate gene names: NA

Gene position: 1207227-1206727 (Counterclockwise)

Preceding gene: 209694665

Following gene: 209694655

Centisome position: 36.31

GC content: 34.53

Gene sequence:

>501_bases
ATGAAAAAGAAAGGCTTCACTTTGATAGAACTTATCATTGTAATTGTAGTTTTAAGTATCTTAGCAATTACTGCAGCATC
AAAATTTATAAACCTTCAACGTGATTCTCGAATTTCAGCGCTACAAGGGCTAAAAGGAGAAATGACTGGAGCAATGAACC
AACTACATCCAAAAACAATTCTTACAGGAGTTGACACTCAAGCAAGCGGGTCTATAACAATACTTGGTGATAATATTCAC
ATTGTATATGGTTACCCAAAAGCCGATGCAGCCAAATCTTGGAATAAACTAATGAATCAAGTTTTTGTTGATTCTCAATA
CAATGACAATATTCCATCTGAATGGTATTTTCATAATGACACTAGTAAACCCTATATTACTTTCATGCACAGAAGTAAAA
AATACAGTACTGATAAGTGTAATATTAAATACAGTGAAGCGGTAAATAGACTGCACTCCTTTAGGTACATGGAGTGGTGC
CACTGTTTACAATGGTGGTGA

Upstream 100 bases:

>100_bases
CAAATAAAACCAACATTGTTCTAACTTCATCAAATCAATACTTTGCTGTTTATCTATATTGTTTAGACTATAGTCTTCTA
AATAATCAGGATTGCATACG

Downstream 100 bases:

>100_bases
CCAAGTAAAACAAGGAAATAATGCTTATAAAGCAAAGTATTGGACTCAGAATAATGATCCTGCAACGGCTGGTGAATGGG
GAGCATGGCAAGACTTAGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MKKKGFTLIELIIVIVVLSILAITAASKFINLQRDSRISALQGLKGEMTGAMNQLHPKTILTGVDTQASGSITILGDNIH
IVYGYPKADAAKSWNKLMNQVFVDSQYNDNIPSEWYFHNDTSKPYITFMHRSKKYSTDKCNIKYSEAVNRLHSFRYMEWC
HCLQWW

Sequences:

>Translated_166_residues
MKKKGFTLIELIIVIVVLSILAITAASKFINLQRDSRISALQGLKGEMTGAMNQLHPKTILTGVDTQASGSITILGDNIH
IVYGYPKADAAKSWNKLMNQVFVDSQYNDNIPSEWYFHNDTSKPYITFMHRSKKYSTDKCNIKYSEAVNRLHSFRYMEWC
HCLQWW
>Mature_166_residues
MKKKGFTLIELIIVIVVLSILAITAASKFINLQRDSRISALQGLKGEMTGAMNQLHPKTILTGVDTQASGSITILGDNIH
IVYGYPKADAAKSWNKLMNQVFVDSQYNDNIPSEWYFHNDTSKPYITFMHRSKKYSTDKCNIKYSEAVNRLHSFRYMEWC
HCLQWW

Specific function: Unknown

COG id: COG2165

COG function: function code NU; Type II secretory pathway, pseudopilin PulG

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19097; Mature: 19097

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKGFTLIELIIVIVVLSILAITAASKFINLQRDSRISALQGLKGEMTGAMNQLHPKTI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHCCCHHH
LTGVDTQASGSITILGDNIHIVYGYPKADAAKSWNKLMNQVFVDSQYNDNIPSEWYFHND
EECCCCCCCCCEEEEECCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECC
TSKPYITFMHRSKKYSTDKCNIKYSEAVNRLHSFRYMEWCHCLQWW
CCCCEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKKGFTLIELIIVIVVLSILAITAASKFINLQRDSRISALQGLKGEMTGAMNQLHPKTI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHCCCHHH
LTGVDTQASGSITILGDNIHIVYGYPKADAAKSWNKLMNQVFVDSQYNDNIPSEWYFHND
EECCCCCCCCCEEEEECCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECC
TSKPYITFMHRSKKYSTDKCNIKYSEAVNRLHSFRYMEWCHCLQWW
CCCCEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA