| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is 209694601
Identifier: 209694601
GI number: 209694601
Start: 1132788
End: 1134902
Strand: Direct
Name: 209694601
Synonym: VSAL_I1041
Alternate gene names: NA
Gene position: 1132788-1134902 (Clockwise)
Preceding gene: 209694600
Following gene: 209694602
Centisome position: 34.07
GC content: 45.06
Gene sequence:
>2115_bases ATGAGTGCCCACCTAGACAAATTGATGATGCAAGTTGCATTGATTGATAGTGTCACCAAACCGCTAAAAGGGATCCAGAA TACGGTGACCGAAACAGCGGATGTTGGCCGTTCAGGTTGGGAAAAAATGGCAGGTGGTACGGCTGGCGTGATTGCAGCAG GTTTTGCTGTTCAACAGGCGTTAATGCCAGCCATTGAAATGGATAGGGTGCTTGGTGAAGTTAAATCGCTTGGTGTGGTT GATGAAGATTTACAGCAACTTCAAAAAACCGCATTAGCCTTTTCGGTTGAGTATGGAAAGTCAGCACAAGAAGTGGTTGG TGCGGCCTATGACATCAAATCGGCTTTCGGGGATATTACTGGACCAGAGTTATCTGATATTACCAAAAGCTCTGCCGTTC TTGCTGCAGCAACTAAAGCGGATACAGCAACCATAACTGATTATATGGGCACCATGTATGGGGTGTTTAAGAATCAGGCC AATGACATGGGTGTGGGCATTTGGTCAAAGAACGTAGCAGGCATGACGGCTCAATCTGTGGAGATGTTTAAAACAACGGG TAAAGGCATGAGTGATGCGTTTACCAGTGTTGGAGCAAACGCAACCGCTGCAGGTATCAAGATGAATGAGCAGATGGCTA TTCTTGGTACGTTGCAATCCACGATGTCAGGCAGTGAAGCCGGTACTAAATATAAATCGTTCTTGACTGGTGTTGGTGGC GCACAAGACAAACTGAACATGAAGTTTGTTGATAGCCAGGGCGCAATGCTGCCAATGGTGGATATTCTCAATAAATTAAA AGGTCAGTTTGGCGACACGCTTGATGTGGCAGAAAGTGACGCATTAAAGAAAGCATTTGGCTCAGATGAGGCCGTCAGCA TGATCAAGTTATTGATGGCTGATACTAACGGATTAGCAAGTAGCATTAACTCTCTTGGTAATGTGAAAGGCATGAGCAAA GCCGAGAATATGGCTGGTGCTATGACTGACCAATGGCAACGACTTGAAGCCGCATGGTTTGCGATCCGTGCCGGAGCGTT TGGGTTAATTCTTCCATCTATTAATGCTATTGCTGGTTCAATGGCCGATGGTTTTAATGTGCTGCTTGGTTGGACTCAAG AGCTTCCTGTATTAACGCAATACCTTGGTTATTTCGCCTTAACAATAGTGGCTGGTGCTGGGTTAATTGCGGCATGGAAT ATGGTTGTCGGTTTGGCATCTTTGATGAGTGCCGGATGGTCTAGCGCCACGTTATTACTCACAACAGTCATGAAAGGCTT TAATTTAGTGATGAGAATGGCACGTTTTGCAGCTCTTGGATTTGCGATGGCTGCAGCAGTGGCACAAGTTCCATTACTGC CCTTAATTCTTGGTATTGGTGCCGTGGTTGCGGCAGTCGGTGCGGTGATTTATTTCTGGGATGATTTAAAAGCGGCGTGG AGCGATTTTTCATTCATTGAATCTCTAGGCTCAATGGTGGATTGGTTAATTGAGAAAATTAACTTAATACCAGGCATAAA TATTGGCGGTGAAAGTTCGGGCATTCCTCAAATGGATACGCTTGAATTAAGCACAGCAACACCAACGCATTACGCCTCAA AAGCAGCAGTGCCGGATTACAGTTATGGGTATCAAGCGCCAGTGACTCAAGAGGTCGCAGTTACTCCAAATGTTACAGAG CCTGTGATCCCGAAAGTGTCTGAACAAAGTGTTAACTATGGCTCTCAATATTCAGGGTTGAATACCGTACCAAGCTATCA AGGTAATGTGTATTACCAGAATCAAATACCAGTACAACCAGAGTCATCTGATCTGATTATAGGCTCGGTGGTTGCTCAGC CAGAGGTTCCAGAAGTGAATGGTATTGTTACTTATGACGGAGCTATTCCACCATTAACTGATACGGATAAGAGTAAAGAG ATGTCGGCACCAATTTCAGCTTACATCGGTGGAAATGCAGAAGGTAAAGCTAATGTGTCTCAGCAATTAAAACAGATGTC TGCAGGCAGTACCGATAATAGCCGAACGCAGCATGTTGGCGATGTGTATATCACTCAAGAGCAAGCCTTTACGCCAGAAG ATTTATCAGCATGGAATGAGATGAGTACCCCATGA
Upstream 100 bases:
>100_bases AGAATTTAGCCAGAGCACTTTGGCTTGATAAACATAACGCTGAAATCGTCGCAAACGGGATAGCCCTCGCATTTAGCAAC GAATAAGGAATTGCCATTAG
Downstream 100 bases:
>100_bases GCCAACAATATATTGATTATTTAGTAACGGATGGCGGTTTAGATTTTGATGCAGGCCAACAGCCTATTGAAACCAGTGAT CGCAATAGTATTGCCCAAGA
Product: tail length determinator
Products: NA
Alternate protein names: Phage Tail Tape Measure Protein Core Region; Tail Tape Measure Protein; Tail Length Determinator; Phage Tail Length Determinator; Tail Tape Measure Protein Bacteriophage Origin; Phage-Related Tail Protein; Phage Tail Tape Measure Core Region; Prophage; Phage-Like Protein; Phage Gene; Phage Tail Tape Measure Family Protein; Phage Tail Tape Measure Protein Family; Phage Tail Protein; Phage Tail Tape Measure Protein Core Region
Number of amino acids: Translated: 704; Mature: 703
Protein sequence:
>704_residues MSAHLDKLMMQVALIDSVTKPLKGIQNTVTETADVGRSGWEKMAGGTAGVIAAGFAVQQALMPAIEMDRVLGEVKSLGVV DEDLQQLQKTALAFSVEYGKSAQEVVGAAYDIKSAFGDITGPELSDITKSSAVLAAATKADTATITDYMGTMYGVFKNQA NDMGVGIWSKNVAGMTAQSVEMFKTTGKGMSDAFTSVGANATAAGIKMNEQMAILGTLQSTMSGSEAGTKYKSFLTGVGG AQDKLNMKFVDSQGAMLPMVDILNKLKGQFGDTLDVAESDALKKAFGSDEAVSMIKLLMADTNGLASSINSLGNVKGMSK AENMAGAMTDQWQRLEAAWFAIRAGAFGLILPSINAIAGSMADGFNVLLGWTQELPVLTQYLGYFALTIVAGAGLIAAWN MVVGLASLMSAGWSSATLLLTTVMKGFNLVMRMARFAALGFAMAAAVAQVPLLPLILGIGAVVAAVGAVIYFWDDLKAAW SDFSFIESLGSMVDWLIEKINLIPGINIGGESSGIPQMDTLELSTATPTHYASKAAVPDYSYGYQAPVTQEVAVTPNVTE PVIPKVSEQSVNYGSQYSGLNTVPSYQGNVYYQNQIPVQPESSDLIIGSVVAQPEVPEVNGIVTYDGAIPPLTDTDKSKE MSAPISAYIGGNAEGKANVSQQLKQMSAGSTDNSRTQHVGDVYITQEQAFTPEDLSAWNEMSTP
Sequences:
>Translated_704_residues MSAHLDKLMMQVALIDSVTKPLKGIQNTVTETADVGRSGWEKMAGGTAGVIAAGFAVQQALMPAIEMDRVLGEVKSLGVV DEDLQQLQKTALAFSVEYGKSAQEVVGAAYDIKSAFGDITGPELSDITKSSAVLAAATKADTATITDYMGTMYGVFKNQA NDMGVGIWSKNVAGMTAQSVEMFKTTGKGMSDAFTSVGANATAAGIKMNEQMAILGTLQSTMSGSEAGTKYKSFLTGVGG AQDKLNMKFVDSQGAMLPMVDILNKLKGQFGDTLDVAESDALKKAFGSDEAVSMIKLLMADTNGLASSINSLGNVKGMSK AENMAGAMTDQWQRLEAAWFAIRAGAFGLILPSINAIAGSMADGFNVLLGWTQELPVLTQYLGYFALTIVAGAGLIAAWN MVVGLASLMSAGWSSATLLLTTVMKGFNLVMRMARFAALGFAMAAAVAQVPLLPLILGIGAVVAAVGAVIYFWDDLKAAW SDFSFIESLGSMVDWLIEKINLIPGINIGGESSGIPQMDTLELSTATPTHYASKAAVPDYSYGYQAPVTQEVAVTPNVTE PVIPKVSEQSVNYGSQYSGLNTVPSYQGNVYYQNQIPVQPESSDLIIGSVVAQPEVPEVNGIVTYDGAIPPLTDTDKSKE MSAPISAYIGGNAEGKANVSQQLKQMSAGSTDNSRTQHVGDVYITQEQAFTPEDLSAWNEMSTP >Mature_703_residues SAHLDKLMMQVALIDSVTKPLKGIQNTVTETADVGRSGWEKMAGGTAGVIAAGFAVQQALMPAIEMDRVLGEVKSLGVVD EDLQQLQKTALAFSVEYGKSAQEVVGAAYDIKSAFGDITGPELSDITKSSAVLAAATKADTATITDYMGTMYGVFKNQAN DMGVGIWSKNVAGMTAQSVEMFKTTGKGMSDAFTSVGANATAAGIKMNEQMAILGTLQSTMSGSEAGTKYKSFLTGVGGA QDKLNMKFVDSQGAMLPMVDILNKLKGQFGDTLDVAESDALKKAFGSDEAVSMIKLLMADTNGLASSINSLGNVKGMSKA ENMAGAMTDQWQRLEAAWFAIRAGAFGLILPSINAIAGSMADGFNVLLGWTQELPVLTQYLGYFALTIVAGAGLIAAWNM VVGLASLMSAGWSSATLLLTTVMKGFNLVMRMARFAALGFAMAAAVAQVPLLPLILGIGAVVAAVGAVIYFWDDLKAAWS DFSFIESLGSMVDWLIEKINLIPGINIGGESSGIPQMDTLELSTATPTHYASKAAVPDYSYGYQAPVTQEVAVTPNVTEP VIPKVSEQSVNYGSQYSGLNTVPSYQGNVYYQNQIPVQPESSDLIIGSVVAQPEVPEVNGIVTYDGAIPPLTDTDKSKEM SAPISAYIGGNAEGKANVSQQLKQMSAGSTDNSRTQHVGDVYITQEQAFTPEDLSAWNEMSTP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 74032; Mature: 73901
Theoretical pI: Translated: 4.31; Mature: 4.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAHLDKLMMQVALIDSVTKPLKGIQNTVTETADVGRSGWEKMAGGTAGVIAAGFAVQQA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHH LMPAIEMDRVLGEVKSLGVVDEDLQQLQKTALAFSVEYGKSAQEVVGAAYDIKSAFGDIT HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC GPELSDITKSSAVLAAATKADTATITDYMGTMYGVFKNQANDMGVGIWSKNVAGMTAQSV CCCHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHH EMFKTTGKGMSDAFTSVGANATAAGIKMNEQMAILGTLQSTMSGSEAGTKYKSFLTGVGG HHHHHCCCCHHHHHHHCCCCCEECCEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCC AQDKLNMKFVDSQGAMLPMVDILNKLKGQFGDTLDVAESDALKKAFGSDEAVSMIKLLMA CCCCCCEEEECCCCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH DTNGLASSINSLGNVKGMSKAENMAGAMTDQWQRLEAAWFAIRAGAFGLILPSINAIAGS CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH MADGFNVLLGWTQELPVLTQYLGYFALTIVAGAGLIAAWNMVVGLASLMSAGWSSATLLL HCCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHH TTVMKGFNLVMRMARFAALGFAMAAAVAQVPLLPLILGIGAVVAAVGAVIYFWDDLKAAW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SDFSFIESLGSMVDWLIEKINLIPGINIGGESSGIPQMDTLELSTATPTHYASKAAVPDY HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCHHHCCCCCCCC SYGYQAPVTQEVAVTPNVTEPVIPKVSEQSVNYGSQYSGLNTVPSYQGNVYYQNQIPVQP CCCCCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCC ESSDLIIGSVVAQPEVPEVNGIVTYDGAIPPLTDTDKSKEMSAPISAYIGGNAEGKANVS CCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCHHHCCCCCEEECCCCCCCCHHH QQLKQMSAGSTDNSRTQHVGDVYITQEQAFTPEDLSAWNEMSTP HHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCC >Mature Secondary Structure SAHLDKLMMQVALIDSVTKPLKGIQNTVTETADVGRSGWEKMAGGTAGVIAAGFAVQQA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHH LMPAIEMDRVLGEVKSLGVVDEDLQQLQKTALAFSVEYGKSAQEVVGAAYDIKSAFGDIT HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC GPELSDITKSSAVLAAATKADTATITDYMGTMYGVFKNQANDMGVGIWSKNVAGMTAQSV CCCHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHH EMFKTTGKGMSDAFTSVGANATAAGIKMNEQMAILGTLQSTMSGSEAGTKYKSFLTGVGG HHHHHCCCCHHHHHHHCCCCCEECCEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCC AQDKLNMKFVDSQGAMLPMVDILNKLKGQFGDTLDVAESDALKKAFGSDEAVSMIKLLMA CCCCCCEEEECCCCCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH DTNGLASSINSLGNVKGMSKAENMAGAMTDQWQRLEAAWFAIRAGAFGLILPSINAIAGS CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH MADGFNVLLGWTQELPVLTQYLGYFALTIVAGAGLIAAWNMVVGLASLMSAGWSSATLLL HCCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHH TTVMKGFNLVMRMARFAALGFAMAAAVAQVPLLPLILGIGAVVAAVGAVIYFWDDLKAAW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SDFSFIESLGSMVDWLIEKINLIPGINIGGESSGIPQMDTLELSTATPTHYASKAAVPDY HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCHHHCCCCCCCC SYGYQAPVTQEVAVTPNVTEPVIPKVSEQSVNYGSQYSGLNTVPSYQGNVYYQNQIPVQP CCCCCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCC ESSDLIIGSVVAQPEVPEVNGIVTYDGAIPPLTDTDKSKEMSAPISAYIGGNAEGKANVS CCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCHHHCCCCCEEECCCCCCCCHHH QQLKQMSAGSTDNSRTQHVGDVYITQEQAFTPEDLSAWNEMSTP HHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA