| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is ybfF [C]
Identifier: 209694484
GI number: 209694484
Start: 1013608
End: 1014405
Strand: Reverse
Name: ybfF [C]
Synonym: VSAL_I0913
Alternate gene names: 209694484
Gene position: 1014405-1013608 (Counterclockwise)
Preceding gene: 209694485
Following gene: 209694482
Centisome position: 30.51
GC content: 36.09
Gene sequence:
>798_bases ATGTCTAATTCTTTGTTATTCCATAAAACCTATGAACATGAATCAAGCTCAAAGTGGGTTGTATTTGTTCATGGAGCAGG TGGAAGTTCCACTACATGGTTCAAACAAATCGCTGCTTTTAGAAAGAATTTTAATATTTTGCTTATTGATTTACGTGGCC ACGGTCGCTCAAGTCACTTCTCACAATTAAAAGAATTCATTAATAAACAGTATTCTTTTAAGGTCGTAAGCCAAGATATT ATCGATGTCCTTGATCACCTTAATATTAAATCAGCACATTTTGTTGGTATGTCTCTTGGCACCATCATTATTCGTAACCT AGCGGAACTGGCACAAGACAGAGTCAGTTCGATGGTATTAGCCGGTGCAATTACGCGTTTTAATTTCCGCTCTCAGTTTT TGATTAAAATGGGCGATATTACTAAAAATATCATGCCTTATATGTGGCTGTATAAATTGTTTGCTTATGTTGTCATGCCA CAAAAAAGCCAAAAAGAATCGCGTCATATTTTCACCAGAGAAGCTAAGAAATTATGCCAGAAAGAGTTTAAACGTTGGTT TAAATTAGCTGCGGATGTGAATCCATTAATGCGCTGTTTTAAAGATAAAGAATTACCAATCCCCACGTTGTATGTCATGG GTGAAAATGACTACATGTTCATGAAACCAGTACAAGAAATGGTTGCGGTACATGAACACAGTCATTTATTGCAAATTCCA GAATGTGGTCACGTATGTAATATCGACAGGCCGAGAGAATTTAATAAACACGCGATAGAGTTTATTACTGCACAATAA
Upstream 100 bases:
>100_bases ATGTCAGATTTCTATCAGTCTACTTCCTTGTGAGTATTCATCGTTGATATAGGATGGTATAGTCTGACTCCATATCTTTC TCATATTAAAAGTAGAGTGA
Downstream 100 bases:
>100_bases TTGAATTCAAATTAAGAACAAATAAAAACGGAGATCATGATGATCTCCGTTTTTTTGTATTTACGACATTATTTAAAGAA TAACGGTCTTATTACCATAA
Product: hypothetical protein
Products: NA
Alternate protein names: Alpha/Beta Hydrolase Fold; Beta-Ketoadipate Enol-Lactone Hydrolase; Alpha/Beta Fold Family Hydrolase; Alpha/Beta Hydrolase; 3-Oxoadipate Enol-Lactonase; Hydrolase; Arylesterase; 2-Hydroxy-6-Ketonona-2 4-Dienedoic Acid Hydrolase; Alpha/Beta Fold Superfamily Hydrolase; Tetranactin Resistance Protein; Oxidoreductase; 3-Oxoadipate Enol-Lactone Hydrolase; Hydrolase Or Acyltransferase-Like Protein; Hydrolase Alpha/Beta Fold Family Protein; Alpha/Beta Family Hydrolase; 3-Oxoadipate Enol-Lactonase II
Number of amino acids: Translated: 265; Mature: 264
Protein sequence:
>265_residues MSNSLLFHKTYEHESSSKWVVFVHGAGGSSTTWFKQIAAFRKNFNILLIDLRGHGRSSHFSQLKEFINKQYSFKVVSQDI IDVLDHLNIKSAHFVGMSLGTIIIRNLAELAQDRVSSMVLAGAITRFNFRSQFLIKMGDITKNIMPYMWLYKLFAYVVMP QKSQKESRHIFTREAKKLCQKEFKRWFKLAADVNPLMRCFKDKELPIPTLYVMGENDYMFMKPVQEMVAVHEHSHLLQIP ECGHVCNIDRPREFNKHAIEFITAQ
Sequences:
>Translated_265_residues MSNSLLFHKTYEHESSSKWVVFVHGAGGSSTTWFKQIAAFRKNFNILLIDLRGHGRSSHFSQLKEFINKQYSFKVVSQDI IDVLDHLNIKSAHFVGMSLGTIIIRNLAELAQDRVSSMVLAGAITRFNFRSQFLIKMGDITKNIMPYMWLYKLFAYVVMP QKSQKESRHIFTREAKKLCQKEFKRWFKLAADVNPLMRCFKDKELPIPTLYVMGENDYMFMKPVQEMVAVHEHSHLLQIP ECGHVCNIDRPREFNKHAIEFITAQ >Mature_264_residues SNSLLFHKTYEHESSSKWVVFVHGAGGSSTTWFKQIAAFRKNFNILLIDLRGHGRSSHFSQLKEFINKQYSFKVVSQDII DVLDHLNIKSAHFVGMSLGTIIIRNLAELAQDRVSSMVLAGAITRFNFRSQFLIKMGDITKNIMPYMWLYKLFAYVVMPQ KSQKESRHIFTREAKKLCQKEFKRWFKLAADVNPLMRCFKDKELPIPTLYVMGENDYMFMKPVQEMVAVHEHSHLLQIPE CGHVCNIDRPREFNKHAIEFITAQ
Specific function: Unknown
COG id: COG0596
COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 3.1.-.- [C]
Molecular weight: Translated: 30894; Mature: 30763
Theoretical pI: Translated: 10.00; Mature: 10.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNSLLFHKTYEHESSSKWVVFVHGAGGSSTTWFKQIAAFRKNFNILLIDLRGHGRSSHF CCCCEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHH SQLKEFINKQYSFKVVSQDIIDVLDHLNIKSAHFVGMSLGTIIIRNLAELAQDRVSSMVL HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AGAITRFNFRSQFLIKMGDITKNIMPYMWLYKLFAYVVMPQKSQKESRHIFTREAKKLCQ HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH KEFKRWFKLAADVNPLMRCFKDKELPIPTLYVMGENDYMFMKPVQEMVAVHEHSHLLQIP HHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEECCCCEEHHHHHHHHHHHHHCCCEEECC ECGHVCNIDRPREFNKHAIEFITAQ CCCCCCCCCCCCHHHHHHHHEEECC >Mature Secondary Structure SNSLLFHKTYEHESSSKWVVFVHGAGGSSTTWFKQIAAFRKNFNILLIDLRGHGRSSHF CCCEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHH SQLKEFINKQYSFKVVSQDIIDVLDHLNIKSAHFVGMSLGTIIIRNLAELAQDRVSSMVL HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AGAITRFNFRSQFLIKMGDITKNIMPYMWLYKLFAYVVMPQKSQKESRHIFTREAKKLCQ HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH KEFKRWFKLAADVNPLMRCFKDKELPIPTLYVMGENDYMFMKPVQEMVAVHEHSHLLQIP HHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEECCCCEEHHHHHHHHHHHHHCCCEEECC ECGHVCNIDRPREFNKHAIEFITAQ CCCCCCCCCCCCHHHHHHHHEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA