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The map label for this gene is yoaA [H]

Identifier: 209694482

GI number: 209694482

Start: 1010327

End: 1012282

Strand: Reverse

Name: yoaA [H]

Synonym: VSAL_I0911

Alternate gene names: 209694482

Gene position: 1012282-1010327 (Counterclockwise)

Preceding gene: 209694484

Following gene: 209694481

Centisome position: 30.44

GC content: 42.02

Gene sequence:

>1956_bases
ATGATTGCTAAGATTTTTTCGTCATCAGGCGCGTTAGGAAAAGCGATTCCGGGTTTCCAACCTCGTCAACCTCAATTAGA
TATGGCTCATGCGGTTCATGCTGCTATCAAAGATGGTACACAATTAGTGGTAGAAGCGGGTACGGGTACAGGAAAGACGT
TTGCTTATCTTGTTCCTGCTCTGATTAGTGGCAAAAAGACCATTATCAGTACGGGTTCTAAAAACTTACAAGAACAGCTT
TTTCATCGTGATTTACCTTTAATGACATCTTCACTGGGTTTTTATGGTCAAGTGGCTTTATTAAAAGGACGCTCAAACTA
CCTTTGTCCAGAGCGTTTAAACCAGCAATTAGTCGAAAGTCATACTCCTCAAGCTGATCCTGAGTTATTAACGCAACTTG
TTAAGGTGCGTGCTTGGTCATCAGAAACAAAAACAGGGGATCTTGGTGATTGCACCGCGATTGCCGAAGACAGCCCGATA
ATTCCTTCAATTACTTCCACCAACGACAACTGTTTAGGTAAAGATTGCCCGAGCTTTGATGAGTGTTTTGTGGTTAAAGC
GCGAAAGAAAGCAATGGATGCTGATGTCGTGGTGGTGAACCATCATCTATTTCTTGCTGATTTAGCGATCAAAGAAACAG
GTTTTGGTGAACTGATTCCAGAAGCCGATATTTTTATTTTTGATGAAGCCCATCAATTACCGGATATTGCGAGTCAATAT
TTTGGGCAAAACCTATCTAGCCGCCAGTTGACCGAATTAGCAAAAGACATCGAAATTGGCTATCGCACCGAAGCAAGAGA
CATGCGCCAATTGCAAAAAGTAGCAGAGCGTCTAGCGGGTGCAGCAATGGACTTACGTATTGTATTAGGTGAACCCGGAT
TTCGAGGTAATTGGCGAGAGGCCATTAAGTCGGCGGCGGTTCAACGTGAAATTGTACGTATAAATGATGCGTTTGAGCTG
GCTCATGATGTTTTGAAATTAGCATTAGGGCGTAGCCAGCTATTGGATGCCGCTTTTGATCGTTGTGCCTTATTAAAGAA
TCGTCTAGAGCGTGTATGTGATACCACGATTGGTGGTTATTCCTATTGGTTTGAATGTACTCCTCGTCATTTTAGTTTGA
ATATTACACCATTGTCTGTCGCTGATAAGTTTAAAGAACAAGTGGCAGATAAAGAAGGGGCTTGGATATTTACGTCGGCA
ACACTGGGCGTAAATGATGATTTTTCTCATTTTACCGAGCGCTTGGGGTTGGAACCAACAAAACAGTTTTCATTACCGAG
TCCGTTTGATTATCAAACTCAAGCGTTGTTGTGTGTTCCGCGTTTTCTTCCTGAACCGAACAGTCATGGTATTGCGAATA
AACTTGTGGAATTACTGCTACCAGTGATTAAACAAAATAATGGTCGGTGTTTCTTTTTGTGCACGTCACATCAAATGATG
CGGGATTTGGCAGGACAGTTCAGAGAGATGTTAGATCTGCCGGTATTAATGCAAGGTGAGACGACCAAGCAAAAATTGTT
GGCGGAGTTTATGGAACTTGGCAACGCGTTATTGGTTGCTACAGGGGCTTTCTGGGAAGGTATTGACGTTAGAGGTGATG
CGCTAAGCTGTGTTATCATCGACAAACTTCCCTTTACTGCCCCTGATGATCCGCTCTTGAAAGCGCGCATTGAAGATTGT
CAGCTAAGTGGTGGTGACGCATTTTCACAAGTACAAATACCTGATGCTGTTATAACCTTAAAGCAAGGGGTAGGACGATT
AATTCGCGATACCAAAGACAAAGGGGTATTGATTATTTGTGACAATCGTTTAGTTACTAGGCCTTATGGGGCTACGTTTC
TACAAAGTTTACCGCCGATACCAAGAACTCGAGATTTAAAAAATGTGTCTGAATTTTTAGCGAAAGCAGATCAACATAAA
AAATTAGAGAAACAAGAAGTTATTTTAGAAAATTGA

Upstream 100 bases:

>100_bases
CCAACTCGTTATCTGAATAAGTAAACTTAACGTTTAGTTTCTCTGTAAATCTTGGCATAATCTTAACCCTATTTTAAAAT
CACGATGAGTATGGGTTGAT

Downstream 100 bases:

>100_bases
GGCACTAATGAGCGTAAAAATTTTAGCGGTAGATACCGCCACTGAAAACTGTTCTGTCGCATTAATCATTGACGGAAAAG
TCCATTCTCGAAGTGCAGTG

Product: ATP-dependent helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 651; Mature: 651

Protein sequence:

>651_residues
MIAKIFSSSGALGKAIPGFQPRQPQLDMAHAVHAAIKDGTQLVVEAGTGTGKTFAYLVPALISGKKTIISTGSKNLQEQL
FHRDLPLMTSSLGFYGQVALLKGRSNYLCPERLNQQLVESHTPQADPELLTQLVKVRAWSSETKTGDLGDCTAIAEDSPI
IPSITSTNDNCLGKDCPSFDECFVVKARKKAMDADVVVVNHHLFLADLAIKETGFGELIPEADIFIFDEAHQLPDIASQY
FGQNLSSRQLTELAKDIEIGYRTEARDMRQLQKVAERLAGAAMDLRIVLGEPGFRGNWREAIKSAAVQREIVRINDAFEL
AHDVLKLALGRSQLLDAAFDRCALLKNRLERVCDTTIGGYSYWFECTPRHFSLNITPLSVADKFKEQVADKEGAWIFTSA
TLGVNDDFSHFTERLGLEPTKQFSLPSPFDYQTQALLCVPRFLPEPNSHGIANKLVELLLPVIKQNNGRCFFLCTSHQMM
RDLAGQFREMLDLPVLMQGETTKQKLLAEFMELGNALLVATGAFWEGIDVRGDALSCVIIDKLPFTAPDDPLLKARIEDC
QLSGGDAFSQVQIPDAVITLKQGVGRLIRDTKDKGVLIICDNRLVTRPYGATFLQSLPPIPRTRDLKNVSEFLAKADQHK
KLEKQEVILEN

Sequences:

>Translated_651_residues
MIAKIFSSSGALGKAIPGFQPRQPQLDMAHAVHAAIKDGTQLVVEAGTGTGKTFAYLVPALISGKKTIISTGSKNLQEQL
FHRDLPLMTSSLGFYGQVALLKGRSNYLCPERLNQQLVESHTPQADPELLTQLVKVRAWSSETKTGDLGDCTAIAEDSPI
IPSITSTNDNCLGKDCPSFDECFVVKARKKAMDADVVVVNHHLFLADLAIKETGFGELIPEADIFIFDEAHQLPDIASQY
FGQNLSSRQLTELAKDIEIGYRTEARDMRQLQKVAERLAGAAMDLRIVLGEPGFRGNWREAIKSAAVQREIVRINDAFEL
AHDVLKLALGRSQLLDAAFDRCALLKNRLERVCDTTIGGYSYWFECTPRHFSLNITPLSVADKFKEQVADKEGAWIFTSA
TLGVNDDFSHFTERLGLEPTKQFSLPSPFDYQTQALLCVPRFLPEPNSHGIANKLVELLLPVIKQNNGRCFFLCTSHQMM
RDLAGQFREMLDLPVLMQGETTKQKLLAEFMELGNALLVATGAFWEGIDVRGDALSCVIIDKLPFTAPDDPLLKARIEDC
QLSGGDAFSQVQIPDAVITLKQGVGRLIRDTKDKGVLIICDNRLVTRPYGATFLQSLPPIPRTRDLKNVSEFLAKADQHK
KLEKQEVILEN
>Mature_651_residues
MIAKIFSSSGALGKAIPGFQPRQPQLDMAHAVHAAIKDGTQLVVEAGTGTGKTFAYLVPALISGKKTIISTGSKNLQEQL
FHRDLPLMTSSLGFYGQVALLKGRSNYLCPERLNQQLVESHTPQADPELLTQLVKVRAWSSETKTGDLGDCTAIAEDSPI
IPSITSTNDNCLGKDCPSFDECFVVKARKKAMDADVVVVNHHLFLADLAIKETGFGELIPEADIFIFDEAHQLPDIASQY
FGQNLSSRQLTELAKDIEIGYRTEARDMRQLQKVAERLAGAAMDLRIVLGEPGFRGNWREAIKSAAVQREIVRINDAFEL
AHDVLKLALGRSQLLDAAFDRCALLKNRLERVCDTTIGGYSYWFECTPRHFSLNITPLSVADKFKEQVADKEGAWIFTSA
TLGVNDDFSHFTERLGLEPTKQFSLPSPFDYQTQALLCVPRFLPEPNSHGIANKLVELLLPVIKQNNGRCFFLCTSHQMM
RDLAGQFREMLDLPVLMQGETTKQKLLAEFMELGNALLVATGAFWEGIDVRGDALSCVIIDKLPFTAPDDPLLKARIEDC
QLSGGDAFSQVQIPDAVITLKQGVGRLIRDTKDKGVLIICDNRLVTRPYGATFLQSLPPIPRTRDLKNVSEFLAKADQHK
KLEKQEVILEN

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase ATP-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788110, Length=630, Percent_Identity=65.7142857142857, Blast_Score=864, Evalue=0.0,
Organism=Escherichia coli, GI1787018, Length=698, Percent_Identity=27.2206303724928, Blast_Score=172, Evalue=9e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR010614
- InterPro:   IPR014013
- InterPro:   IPR006555
- InterPro:   IPR006935 [H]

Pfam domain/function: PF06733 DEAD_2; PF04851 ResIII [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 72071; Mature: 72071

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAKIFSSSGALGKAIPGFQPRQPQLDMAHAVHAAIKDGTQLVVEAGTGTGKTFAYLVPA
CCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH
LISGKKTIISTGSKNLQEQLFHRDLPLMTSSLGFYGQVALLKGRSNYLCPERLNQQLVES
HHCCCEEEEECCCHHHHHHHHHCCCCHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHH
HTPQADPELLTQLVKVRAWSSETKTGDLGDCTAIAEDSPIIPSITSTNDNCLGKDCPSFD
CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHH
ECFVVKARKKAMDADVVVVNHHLFLADLAIKETGFGELIPEADIFIFDEAHQLPDIASQY
HHEEEHHHHHCCCCCEEEEECEEEEHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHH
FGQNLSSRQLTELAKDIEIGYRTEARDMRQLQKVAERLAGAAMDLRIVLGEPGFRGNWRE
HCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHH
AIKSAAVQREIVRINDAFELAHDVLKLALGRSQLLDAAFDRCALLKNRLERVCDTTIGGY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SYWFECTPRHFSLNITPLSVADKFKEQVADKEGAWIFTSATLGVNDDFSHFTERLGLEPT
EEEEEECCCEEEEEEEEHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCC
KQFSLPSPFDYQTQALLCVPRFLPEPNSHGIANKLVELLLPVIKQNNGRCFFLCTSHQMM
CCCCCCCCCCCCCHHHEEEHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
RDLAGQFREMLDLPVLMQGETTKQKLLAEFMELGNALLVATGAFWEGIDVRGDALSCVII
HHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCEEEEEEE
DKLPFTAPDDPLLKARIEDCQLSGGDAFSQVQIPDAVITLKQGVGRLIRDTKDKGVLIIC
ECCCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCEEEEE
DNRLVTRPYGATFLQSLPPIPRTRDLKNVSEFLAKADQHKKLEKQEVILEN
CCEEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIAKIFSSSGALGKAIPGFQPRQPQLDMAHAVHAAIKDGTQLVVEAGTGTGKTFAYLVPA
CCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH
LISGKKTIISTGSKNLQEQLFHRDLPLMTSSLGFYGQVALLKGRSNYLCPERLNQQLVES
HHCCCEEEEECCCHHHHHHHHHCCCCHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHH
HTPQADPELLTQLVKVRAWSSETKTGDLGDCTAIAEDSPIIPSITSTNDNCLGKDCPSFD
CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHH
ECFVVKARKKAMDADVVVVNHHLFLADLAIKETGFGELIPEADIFIFDEAHQLPDIASQY
HHEEEHHHHHCCCCCEEEEECEEEEHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHH
FGQNLSSRQLTELAKDIEIGYRTEARDMRQLQKVAERLAGAAMDLRIVLGEPGFRGNWRE
HCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHH
AIKSAAVQREIVRINDAFELAHDVLKLALGRSQLLDAAFDRCALLKNRLERVCDTTIGGY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SYWFECTPRHFSLNITPLSVADKFKEQVADKEGAWIFTSATLGVNDDFSHFTERLGLEPT
EEEEEECCCEEEEEEEEHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCC
KQFSLPSPFDYQTQALLCVPRFLPEPNSHGIANKLVELLLPVIKQNNGRCFFLCTSHQMM
CCCCCCCCCCCCCHHHEEEHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
RDLAGQFREMLDLPVLMQGETTKQKLLAEFMELGNALLVATGAFWEGIDVRGDALSCVII
HHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCEEEEEEE
DKLPFTAPDDPLLKARIEDCQLSGGDAFSQVQIPDAVITLKQGVGRLIRDTKDKGVLIIC
ECCCCCCCCCHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCEEEEE
DNRLVTRPYGATFLQSLPPIPRTRDLKNVSEFLAKADQHKKLEKQEVILEN
CCEEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]