| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is glgP [H]
Identifier: 197120181
GI number: 197120181
Start: 4360029
End: 4362581
Strand: Direct
Name: glgP [H]
Synonym: Gbem_3820
Alternate gene names: 197120181
Gene position: 4360029-4362581 (Clockwise)
Preceding gene: 197120180
Following gene: 197120224
Centisome position: 94.47
GC content: 64.98
Gene sequence:
>2553_bases ATGAACCTGAGCTCAACGCTGCACAGATTTACCGTCGTCCCCTCGCTTCCCAAGGAGCTTGCCGGGCTGCAGCGCATCGC CTACAACCTCTGGTGGAGCTGGGAACCCGAAGCCATCGGCCTTTTCAAACGACTGGACCCCGAACTCTGGCGCCTGACGC GCCACAACCCCCTCGAGGTGCTGGGAAGCCTGCAGCAGGCGACCTTCGAGAGCCTCATGGCGGACGAGGGGTTCATGTCC CACCTCTCGCAGGTAGAGGAACGCCTTACCGAATACCTCTCCTCCCACACCTGGTATGAGCGGCACGGCAACTCCGGCGC CCGCATCGCCTACTTCTCCATGGAATTCGGCCTGCACGAGTCGCTCCCCATCTACTCCGGGGGGCTCGGCATCCTCGCGG GCGACCACCTCAAATCCGCCAGCGATTTAGGGCTCCCTCTGGTCGGTGTCGGGCTTTTGTACCGCCAGGGGTACTTCCGC CAGTACCTGAACCTGGAAGGGTGGCAGCAGGAAATCTACCCCGAAAACGACTTCTACAACCTCCCGCTGCACCAGGAGAA GGACAGGGATGGAAAGCCCGTGGCGTTCTCCCTGGAGTACCCGGGGAGAAACGTGCGGGTGCAGGTCTGGCGGGTGCAGG TAGGCCGCGTCAACCTCTACCTTCTTGACACGAACCTCGAGGAGAATGCCCCCGCCGACCGTGAAATTACCACCAGGCTC TACGGCGGCGACCAGGAGTTGCGGATCAGGCAGGAAATCCTGCTCGGCATCGGCGGCATCCGGGCGCTGAGGCTTTTGGG GGCCGAGCCCAACGTCTGCCACATGAACGAGGGGCACGCCGCCTTCCTGGCGCTGGAGCGGATCCGCTCCCTGATGGAGC AGCGCCAGCTCACCTTCCGGGAGGCGATGGAGGCGGTGAGAGGCGGCAACGTCTTCACCACCCACACGCCGGTTGAGGCC GGGATCGACCATTTCCCCCCCGATCTACTCGACCAGTACATGGGGCATTACTACAGAAACCTGGGGCTTTCCCGCGAGCA GTTCATGGCCCTGGGGATGCAGAACCACGGCAGGAGCAACGAAAGCTTCTGCATGGCGGTGCTCGCCATGAAGCTCTCGC TCCACTCAAACGGGGTAAGCGAACTGCACGGGGAGGTGTCGCGCAGGATGTGGGCGGACGTCTGGCCGGACCTCCCCGAG GAACAGCTGCCGCTTACCTACGTCACCAACGGGGTGCACCAGAAGAGCTGGCTCTCGGAGGAGATGACCGGCCTGTTGAT CCGGTTCCTCGGCACCAGGTGGTTGGAACAAAGCGCCGATCAGCTCTGGCGCAGGGTCTCGCGCATCCCGGACGCGGAGC TTTGGCGCACGCACCGGCGCGGCACCGAGCAGCTGGTCGACTACGCCCGCCGCAGCTTGAGGGCGCAGCTGGAGAAGCTC GACGCCTCCGCCAAGGAGATCGACGCGGCAGGCGACGTCCTGGACCCGGAGATACTCACCATCGGCTTCGCGCGCCGCTT CGCCACCTACAAGCGCGGGACGCTCCTGTTGCACGACAAGGAGCGGCTCTTCAGGATACTGAACCACCCCGAGCGGCCGG TGCAGATCGTATTCGCCGGGAAGGCACACCCCGCCGACCACCAGGGAAAGGAGCTGATCCGCCAGATCGTGCAGCTGTCG CAGCAGCCCGAGTTCCGGCGCCGCATCGTCTTTTTGGAGGATTACGACATCTCGGTGGCCCGGCGCCTGGTGCAGGGGGT GGACATCTGGCTCAACACGCCGCTCAGGCCCCTGGAGGCCAGCGGCACCAGCGGGATGAAGGTCGCCTTCAACGGCGGCC TCAACCTGAGCATCCTGGACGGCTGGTGGTGCGAGGGGTACCGCGGGAACAACGGCTGGGCCATAGGGCGCGGCGAGGTG TACGACGACCTGGCCTACCAGAACCAGGTGGAGAGCCGCGCCATCTACGACCTTCTGGAGAAGGAGATCGTGCCCCTTTT CTACAACCGGGGGAACGACGGCATCCCGCGCGGCTGGACCACCTTCATGAAGAGCTCCATGCAGACGCTCTGCCCGGTGT TCAGCACGGACCGGATGGTGCAGGAGTACGCAAGGCGCTGCTACCTTCCCGCCTTCGAACACTGGGAGCGGCTGAACCGC GACGACCTGCGGCTTGCGGTGGAGCTGGCGCGCTGGAAGGAGCGGCTGCACGGCATGTGGGGGGAGCTTTCCATCGTGGC GGTCCACGCCGAGATCCAGAAGGAGGTGATGGTGGGGGAGATGCTACCCATCTCGGTGCAGATCACGCCGGGGCGGATCC CGCTTTCCGAGATCGCGGTGGAGGTCTATTTCGGGGTGCTCGATTCCCGCGGCGCCATCATCGGGGGGGAGATCGTGCCG CTTACGCCGGTGGCAGACCCGGAAAAGGCGGGGCACTTCGGCGGCGAACTGGAGTGCCGCTTCTGCGGGCGGCACGGCTT CATGCTGCGGGTAATGCCCAGGCACCCGGAGCTTGGGACCGTGTACGATCCGGGGCTGATACTCTGGGGTTAG
Upstream 100 bases:
>100_bases CGGCACCACTACTCGGTATGAGCTACAAGACGCTGCAATACCGGTTGGAAAAATTCGGCATCGGCAAACCGGAGTAGCCT CAAGTAGCCAGGAGCGCGGT
Downstream 100 bases:
>100_bases GCGGGAAGGGTCAAGGAGAGGCGAAACGAAAAAGGTGGGGCGCGAGCCTCACCTTTTTTTGAGGCTGTAGACGTAGGCGA GGATCTCGGCGACGGCGGCG
Product: alpha-glucan phosphorylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 850; Mature: 850
Protein sequence:
>850_residues MNLSSTLHRFTVVPSLPKELAGLQRIAYNLWWSWEPEAIGLFKRLDPELWRLTRHNPLEVLGSLQQATFESLMADEGFMS HLSQVEERLTEYLSSHTWYERHGNSGARIAYFSMEFGLHESLPIYSGGLGILAGDHLKSASDLGLPLVGVGLLYRQGYFR QYLNLEGWQQEIYPENDFYNLPLHQEKDRDGKPVAFSLEYPGRNVRVQVWRVQVGRVNLYLLDTNLEENAPADREITTRL YGGDQELRIRQEILLGIGGIRALRLLGAEPNVCHMNEGHAAFLALERIRSLMEQRQLTFREAMEAVRGGNVFTTHTPVEA GIDHFPPDLLDQYMGHYYRNLGLSREQFMALGMQNHGRSNESFCMAVLAMKLSLHSNGVSELHGEVSRRMWADVWPDLPE EQLPLTYVTNGVHQKSWLSEEMTGLLIRFLGTRWLEQSADQLWRRVSRIPDAELWRTHRRGTEQLVDYARRSLRAQLEKL DASAKEIDAAGDVLDPEILTIGFARRFATYKRGTLLLHDKERLFRILNHPERPVQIVFAGKAHPADHQGKELIRQIVQLS QQPEFRRRIVFLEDYDISVARRLVQGVDIWLNTPLRPLEASGTSGMKVAFNGGLNLSILDGWWCEGYRGNNGWAIGRGEV YDDLAYQNQVESRAIYDLLEKEIVPLFYNRGNDGIPRGWTTFMKSSMQTLCPVFSTDRMVQEYARRCYLPAFEHWERLNR DDLRLAVELARWKERLHGMWGELSIVAVHAEIQKEVMVGEMLPISVQITPGRIPLSEIAVEVYFGVLDSRGAIIGGEIVP LTPVADPEKAGHFGGELECRFCGRHGFMLRVMPRHPELGTVYDPGLILWG
Sequences:
>Translated_850_residues MNLSSTLHRFTVVPSLPKELAGLQRIAYNLWWSWEPEAIGLFKRLDPELWRLTRHNPLEVLGSLQQATFESLMADEGFMS HLSQVEERLTEYLSSHTWYERHGNSGARIAYFSMEFGLHESLPIYSGGLGILAGDHLKSASDLGLPLVGVGLLYRQGYFR QYLNLEGWQQEIYPENDFYNLPLHQEKDRDGKPVAFSLEYPGRNVRVQVWRVQVGRVNLYLLDTNLEENAPADREITTRL YGGDQELRIRQEILLGIGGIRALRLLGAEPNVCHMNEGHAAFLALERIRSLMEQRQLTFREAMEAVRGGNVFTTHTPVEA GIDHFPPDLLDQYMGHYYRNLGLSREQFMALGMQNHGRSNESFCMAVLAMKLSLHSNGVSELHGEVSRRMWADVWPDLPE EQLPLTYVTNGVHQKSWLSEEMTGLLIRFLGTRWLEQSADQLWRRVSRIPDAELWRTHRRGTEQLVDYARRSLRAQLEKL DASAKEIDAAGDVLDPEILTIGFARRFATYKRGTLLLHDKERLFRILNHPERPVQIVFAGKAHPADHQGKELIRQIVQLS QQPEFRRRIVFLEDYDISVARRLVQGVDIWLNTPLRPLEASGTSGMKVAFNGGLNLSILDGWWCEGYRGNNGWAIGRGEV YDDLAYQNQVESRAIYDLLEKEIVPLFYNRGNDGIPRGWTTFMKSSMQTLCPVFSTDRMVQEYARRCYLPAFEHWERLNR DDLRLAVELARWKERLHGMWGELSIVAVHAEIQKEVMVGEMLPISVQITPGRIPLSEIAVEVYFGVLDSRGAIIGGEIVP LTPVADPEKAGHFGGELECRFCGRHGFMLRVMPRHPELGTVYDPGLILWG >Mature_850_residues MNLSSTLHRFTVVPSLPKELAGLQRIAYNLWWSWEPEAIGLFKRLDPELWRLTRHNPLEVLGSLQQATFESLMADEGFMS HLSQVEERLTEYLSSHTWYERHGNSGARIAYFSMEFGLHESLPIYSGGLGILAGDHLKSASDLGLPLVGVGLLYRQGYFR QYLNLEGWQQEIYPENDFYNLPLHQEKDRDGKPVAFSLEYPGRNVRVQVWRVQVGRVNLYLLDTNLEENAPADREITTRL YGGDQELRIRQEILLGIGGIRALRLLGAEPNVCHMNEGHAAFLALERIRSLMEQRQLTFREAMEAVRGGNVFTTHTPVEA GIDHFPPDLLDQYMGHYYRNLGLSREQFMALGMQNHGRSNESFCMAVLAMKLSLHSNGVSELHGEVSRRMWADVWPDLPE EQLPLTYVTNGVHQKSWLSEEMTGLLIRFLGTRWLEQSADQLWRRVSRIPDAELWRTHRRGTEQLVDYARRSLRAQLEKL DASAKEIDAAGDVLDPEILTIGFARRFATYKRGTLLLHDKERLFRILNHPERPVQIVFAGKAHPADHQGKELIRQIVQLS QQPEFRRRIVFLEDYDISVARRLVQGVDIWLNTPLRPLEASGTSGMKVAFNGGLNLSILDGWWCEGYRGNNGWAIGRGEV YDDLAYQNQVESRAIYDLLEKEIVPLFYNRGNDGIPRGWTTFMKSSMQTLCPVFSTDRMVQEYARRCYLPAFEHWERLNR DDLRLAVELARWKERLHGMWGELSIVAVHAEIQKEVMVGEMLPISVQITPGRIPLSEIAVEVYFGVLDSRGAIIGGEIVP LTPVADPEKAGHFGGELECRFCGRHGFMLRVMPRHPELGTVYDPGLILWG
Specific function: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties [
COG id: COG0058
COG function: function code G; Glucan phosphorylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycogen phosphorylase family [H]
Homologues:
Organism=Homo sapiens, GI21361370, Length=582, Percent_Identity=24.0549828178694, Blast_Score=89, Evalue=2e-17, Organism=Homo sapiens, GI5032009, Length=583, Percent_Identity=23.4991423670669, Blast_Score=87, Evalue=6e-17, Organism=Homo sapiens, GI257900462, Length=453, Percent_Identity=22.9580573951435, Blast_Score=82, Evalue=2e-15, Organism=Escherichia coli, GI2367228, Length=567, Percent_Identity=25.7495590828924, Blast_Score=108, Evalue=2e-24, Organism=Escherichia coli, GI48994936, Length=569, Percent_Identity=23.1985940246046, Blast_Score=83, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17564550, Length=592, Percent_Identity=23.4797297297297, Blast_Score=101, Evalue=1e-21, Organism=Caenorhabditis elegans, GI32566204, Length=592, Percent_Identity=23.4797297297297, Blast_Score=101, Evalue=2e-21, Organism=Saccharomyces cerevisiae, GI6325418, Length=474, Percent_Identity=22.3628691983122, Blast_Score=78, Evalue=8e-15, Organism=Drosophila melanogaster, GI78706832, Length=483, Percent_Identity=22.9813664596273, Blast_Score=81, Evalue=3e-15, Organism=Drosophila melanogaster, GI24581010, Length=483, Percent_Identity=22.9813664596273, Blast_Score=81, Evalue=3e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011834 - InterPro: IPR000811 [H]
Pfam domain/function: PF00343 Phosphorylase [H]
EC number: =2.4.1.1 [H]
Molecular weight: Translated: 97316; Mature: 97316
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLSSTLHRFTVVPSLPKELAGLQRIAYNLWWSWEPEAIGLFKRLDPELWRLTRHNPLEV CCCHHHHHHEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHCCCCHHHH LGSLQQATFESLMADEGFMSHLSQVEERLTEYLSSHTWYERHGNSGARIAYFSMEFGLHE HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEEEEECCCCC SLPIYSGGLGILAGDHLKSASDLGLPLVGVGLLYRQGYFRQYLNLEGWQQEIYPENDFYN CCCCCCCCCCEEECCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEE LPLHQEKDRDGKPVAFSLEYPGRNVRVQVWRVQVGRVNLYLLDTNLEENAPADREITTRL CCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEEECEEEEEEEECCCCCCCCCCCHHHHEE YGGDQELRIRQEILLGIGGIRALRLLGAEPNVCHMNEGHAAFLALERIRSLMEQRQLTFR ECCCHHHHHHHHHHHHCCHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHH EAMEAVRGGNVFTTHTPVEAGIDHFPPDLLDQYMGHYYRNLGLSREQFMALGMQNHGRSN HHHHHHHCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC ESFCMAVLAMKLSLHSNGVSELHGEVSRRMWADVWPDLPEEQLPLTYVTNGVHQKSWLSE HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHHHH EMTGLLIRFLGTRWLEQSADQLWRRVSRIPDAELWRTHRRGTEQLVDYARRSLRAQLEKL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH DASAKEIDAAGDVLDPEILTIGFARRFATYKRGTLLLHDKERLFRILNHPERPVQIVFAG CCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCEEEEEEC KAHPADHQGKELIRQIVQLSQQPEFRRRIVFLEDYDISVARRLVQGVDIWLNTPLRPLEA CCCCCCCHHHHHHHHHHHHCCCCCHHHEEEEEECCCHHHHHHHHHHHHHEECCCCCCCCC SGTSGMKVAFNGGLNLSILDGWWCEGYRGNNGWAIGRGEVYDDLAYQNQVESRAIYDLLE CCCCCEEEEEECCEEEEEECCEECCCEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHH KEIVPLFYNRGNDGIPRGWTTFMKSSMQTLCPVFSTDRMVQEYARRCYLPAFEHWERLNR HCCHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCH DDLRLAVELARWKERLHGMWGELSIVAVHAEIQKEVMVGEMLPISVQITPGRIPLSEIAV HHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHCCCCEEEEEEECCCCCHHHHHH EVYFGVLDSRGAIIGGEIVPLTPVADPEKAGHFGGELECRFCGRHGFMLRVMPRHPELGT HHHHHHHCCCCCEECCCEEEECCCCCCHHCCCCCCCEEEEEECCCCEEEEEECCCCCCCC VYDPGLILWG EECCCEEEEC >Mature Secondary Structure MNLSSTLHRFTVVPSLPKELAGLQRIAYNLWWSWEPEAIGLFKRLDPELWRLTRHNPLEV CCCHHHHHHEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHCCCCHHHH LGSLQQATFESLMADEGFMSHLSQVEERLTEYLSSHTWYERHGNSGARIAYFSMEFGLHE HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEEEEECCCCC SLPIYSGGLGILAGDHLKSASDLGLPLVGVGLLYRQGYFRQYLNLEGWQQEIYPENDFYN CCCCCCCCCCEEECCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCEEE LPLHQEKDRDGKPVAFSLEYPGRNVRVQVWRVQVGRVNLYLLDTNLEENAPADREITTRL CCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEEECEEEEEEEECCCCCCCCCCCHHHHEE YGGDQELRIRQEILLGIGGIRALRLLGAEPNVCHMNEGHAAFLALERIRSLMEQRQLTFR ECCCHHHHHHHHHHHHCCHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHH EAMEAVRGGNVFTTHTPVEAGIDHFPPDLLDQYMGHYYRNLGLSREQFMALGMQNHGRSN HHHHHHHCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC ESFCMAVLAMKLSLHSNGVSELHGEVSRRMWADVWPDLPEEQLPLTYVTNGVHQKSWLSE HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCHHHHHHHH EMTGLLIRFLGTRWLEQSADQLWRRVSRIPDAELWRTHRRGTEQLVDYARRSLRAQLEKL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH DASAKEIDAAGDVLDPEILTIGFARRFATYKRGTLLLHDKERLFRILNHPERPVQIVFAG CCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCEEEEEEC KAHPADHQGKELIRQIVQLSQQPEFRRRIVFLEDYDISVARRLVQGVDIWLNTPLRPLEA CCCCCCCHHHHHHHHHHHHCCCCCHHHEEEEEECCCHHHHHHHHHHHHHEECCCCCCCCC SGTSGMKVAFNGGLNLSILDGWWCEGYRGNNGWAIGRGEVYDDLAYQNQVESRAIYDLLE CCCCCEEEEEECCEEEEEECCEECCCEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHH KEIVPLFYNRGNDGIPRGWTTFMKSSMQTLCPVFSTDRMVQEYARRCYLPAFEHWERLNR HCCHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCH DDLRLAVELARWKERLHGMWGELSIVAVHAEIQKEVMVGEMLPISVQITPGRIPLSEIAV HHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHCCCCEEEEEEECCCCCHHHHHH EVYFGVLDSRGAIIGGEIVPLTPVADPEKAGHFGGELECRFCGRHGFMLRVMPRHPELGT HHHHHHHCCCCCEECCCEEEECCCCCCHHCCCCCCCEEEEEECCCCEEEEEECCCCCCCC VYDPGLILWG EECCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]