| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
Click here to switch to the map view.
The map label for this gene is pssA [H]
Identifier: 197119116
GI number: 197119116
Start: 3172298
End: 3173050
Strand: Reverse
Name: pssA [H]
Synonym: Gbem_2743
Alternate gene names: 197119116
Gene position: 3173050-3172298 (Counterclockwise)
Preceding gene: 197119117
Following gene: 197119115
Centisome position: 68.75
GC content: 62.15
Gene sequence:
>753_bases ATGCGCAAGGGGATCTATATCCTCCCCAACCTATTCACCGCCGGAAGCCTTTTCGCCGGATTTTACTGCATGGTTTCCAC CGTCAACGGCGATTTCCGCACCGCCGCGCTCTGGATCCTTGCTTCCTCCATCTTCGACGGCCTGGACGGCAAGGTGGCCC GCCTGACCGGGACTTCCAGCAAGTTTGGCGTCGAGTTCGACTCTCTAGCCGACGTGGTCTCCTTCGGGGCAGCGCCGGGG CTGCTCATGTACTGCTGGGCCCTGCGCCCCTTCGGTCGCCTCGGTTGGCTCGCCGGGTTCCTGTTCCTGGCCTGCGCCGC GCTTAGGCTCGCCCGGTTCAACGTGCAGGTGGACACGGTTGAGAGCAAGCGCTTCGTAGGCCTTCCGACTCCGGCCGCCG CCAGCATGGTCTCCGCGACGGTGCTCTTCTTCTACCACATGGGTTGGCCCGCCTCTTACAACAAGCTTCTGATCCTGGTC CTGATCTACTTCCTGGCGCTCCTCATGGTCTCCAACGTCCGCTATAACTCCTTCAAGGACCCGAGCCTCATCAAGCGTCA GCCGTTCGCCTTTCTGGTCTTGGCGGTGCTCCTTTTGATCGTCATCGCGGCCGAACCGGTGACCATGCTGTTCACCATCT TCACCTGCTACATCCTTTCGGGGCCGGTCGGATTCGTGCTCACCTACCCGCGCAGACGCAGACTGGAGCGGGCGATGCAC CGGGCGCACGAGGGGATGAAAAGGCAGCAGTAG
Upstream 100 bases:
>100_bases CCAGCATAGACGTGGTCATGGGACAGAAAACGGTTGCAGGGGAGACCGTACTGGGGATACTGCCGTGAGTGAAGAAACAC CTAGAGTCGAAAGGGAAGGG
Downstream 100 bases:
>100_bases CGCCGCCGCAGGACCGATTTCGGGCACGCTCCTGAGGATGCGCCGCCTGCCGCCAACATCGTTTTAATGATTCAAACGGA AAAACCGCTTGACAGCAGTC
Product: CDP-diacylglycerol--serine O-phosphatidyltransferase
Products: NA
Alternate protein names: Phosphatidylserine synthase [H]
Number of amino acids: Translated: 250; Mature: 250
Protein sequence:
>250_residues MRKGIYILPNLFTAGSLFAGFYCMVSTVNGDFRTAALWILASSIFDGLDGKVARLTGTSSKFGVEFDSLADVVSFGAAPG LLMYCWALRPFGRLGWLAGFLFLACAALRLARFNVQVDTVESKRFVGLPTPAAASMVSATVLFFYHMGWPASYNKLLILV LIYFLALLMVSNVRYNSFKDPSLIKRQPFAFLVLAVLLLIVIAAEPVTMLFTIFTCYILSGPVGFVLTYPRRRRLERAMH RAHEGMKRQQ
Sequences:
>Translated_250_residues MRKGIYILPNLFTAGSLFAGFYCMVSTVNGDFRTAALWILASSIFDGLDGKVARLTGTSSKFGVEFDSLADVVSFGAAPG LLMYCWALRPFGRLGWLAGFLFLACAALRLARFNVQVDTVESKRFVGLPTPAAASMVSATVLFFYHMGWPASYNKLLILV LIYFLALLMVSNVRYNSFKDPSLIKRQPFAFLVLAVLLLIVIAAEPVTMLFTIFTCYILSGPVGFVLTYPRRRRLERAMH RAHEGMKRQQ >Mature_250_residues MRKGIYILPNLFTAGSLFAGFYCMVSTVNGDFRTAALWILASSIFDGLDGKVARLTGTSSKFGVEFDSLADVVSFGAAPG LLMYCWALRPFGRLGWLAGFLFLACAALRLARFNVQVDTVESKRFVGLPTPAAASMVSATVLFFYHMGWPASYNKLLILV LIYFLALLMVSNVRYNSFKDPSLIKRQPFAFLVLAVLLLIVIAAEPVTMLFTIFTCYILSGPVGFVLTYPRRRRLERAMH RAHEGMKRQQ
Specific function: Unknown
COG id: COG1183
COG function: function code I; Phosphatidylserine synthase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CDP-alcohol phosphatidyltransferase class-I family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6320864, Length=134, Percent_Identity=41.044776119403, Blast_Score=77, Evalue=3e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004533 - InterPro: IPR000462 [H]
Pfam domain/function: PF01066 CDP-OH_P_transf [H]
EC number: =2.7.8.8 [H]
Molecular weight: Translated: 27824; Mature: 27824
Theoretical pI: Translated: 10.36; Mature: 10.36
Prosite motif: PS00379 CDP_ALCOHOL_P_TRANSF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKGIYILPNLFTAGSLFAGFYCMVSTVNGDFRTAALWILASSIFDGLDGKVARLTGTSS CCCCEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCC KFGVEFDSLADVVSFGAAPGLLMYCWALRPFGRLGWLAGFLFLACAALRLARFNVQVDTV CCCCCHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE ESKRFVGLPTPAAASMVSATVLFFYHMGWPASYNKLLILVLIYFLALLMVSNVRYNSFKD CCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC PSLIKRQPFAFLVLAVLLLIVIAAEPVTMLFTIFTCYILSGPVGFVLTYPRRRRLERAMH CHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHEEEECHHHHHHHHHHH RAHEGMKRQQ HHHHHHCCCC >Mature Secondary Structure MRKGIYILPNLFTAGSLFAGFYCMVSTVNGDFRTAALWILASSIFDGLDGKVARLTGTSS CCCCEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCC KFGVEFDSLADVVSFGAAPGLLMYCWALRPFGRLGWLAGFLFLACAALRLARFNVQVDTV CCCCCHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE ESKRFVGLPTPAAASMVSATVLFFYHMGWPASYNKLLILVLIYFLALLMVSNVRYNSFKD CCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC PSLIKRQPFAFLVLAVLLLIVIAAEPVTMLFTIFTCYILSGPVGFVLTYPRRRRLERAMH CHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHEEEECHHHHHHHHHHH RAHEGMKRQQ HHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]